BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645758|ref|NP_207935.1| hypothetical protein
[Helicobacter pylori 26695]
(85 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.... 25 1.9
pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substr... 25 1.9
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid >... 25 1.9
pdb|1FUO|A Chain A, Fumarase C With Bound Citrate >gi|19421... 25 1.9
pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish ... 25 1.9
pdb|1M21|A Chain A, Crystal Structure Analysis Of The Pepti... 24 2.5
pdb|1LAM| Leucine Aminopeptidase (Unligated) >gi|1127256|... 23 5.6
pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) C... 23 5.6
pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Cova... 22 9.6
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 24.6 bits (52), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
MG +A+ + AS + +V R +I++FL+ V L + E+ N K A G I+ N
Sbjct: 341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFN-KHCAVG--IEPNRER 397
Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
N LL + T Y A
Sbjct: 398 INQLLNESLMLVTALNTHIGYDKAA 422
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 24.6 bits (52), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
MG +A+ + AS + +V R +I++FL+ V L + E+ N K A G I+ N
Sbjct: 341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFN-KHCAVG--IEPNRER 397
Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
N LL + T Y A
Sbjct: 398 INQLLNESLMLVTALNTHIGYDKAA 422
>pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 24.6 bits (52), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
MG +A+ + AS + +V R +I++FL+ V L + E+ N K A G I+ N
Sbjct: 341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFN-KHCAVG--IEPNRER 397
Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
N LL + T Y A
Sbjct: 398 INQLLNESLMLVTALNTHIGYDKAA 422
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
Length = 467
Score = 24.6 bits (52), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
MG +A+ + AS + +V R +I++FL+ V L + E+ N K A G I+ N
Sbjct: 341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFN-KHCAVG--IEPNRER 397
Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
N LL + T Y A
Sbjct: 398 INQLLNESLMLVTALNTHIGYDKAA 422
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 24.6 bits (52), Expect = 1.9
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 1 MGRSLALALQKASISRFASVHRAPLINHFLEQVILQSPSDENKNIKTIAFGGVIKLNPHN 60
MG +A+ + AS + +V R +I++FL+ V L + E+ N K A G I+ N
Sbjct: 341 MGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFN-KHCAVG--IEPNRER 397
Query: 61 RNPLLKPYSAFIALSCTQFHYSACA 85
N LL + T Y A
Sbjct: 398 INQLLNESLMLVTALNTHIGYDKAA 422
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 24.3 bits (51), Expect = 2.5
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 3 RSLALALQKASISRFASVHRAPL 25
R+L L KA + R+ + HRAPL
Sbjct: 323 RTLLLYEFKAGLERYFNTHRAPL 345
>pdb|1LAM| Leucine Aminopeptidase (Unligated)
pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LCP|B Chain B, Bovine Lens Leucine Aminopeptidase Complexed With
L-Leucine Phosphonic Acid
pdb|1LAN|A Chain A, Leucine Aminopeptidase Complex With L-Leucinal
Length = 484
Score = 23.1 bits (48), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (49%)
Query: 9 LQKASISRFASVHRAPLINHFLEQVILQSPSDEN 42
L +ASI V R PL H+ QVI +D N
Sbjct: 386 LFEASIETGDRVWRMPLFEHYTRQVIDCQLADVN 419
>pdb|1BLL|E Chain E, Leucine Aminopeptidase (E.C.3.4.11.1) Complex With
Amastatin
pdb|1LAP| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPM| Leucine Aminopeptidase (E.C.3.4.11.1)
pdb|1BPN| Leucine Aminopeptidase (E.C.3.4.11.1)
Length = 488
Score = 23.1 bits (48), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (49%)
Query: 9 LQKASISRFASVHRAPLINHFLEQVILQSPSDEN 42
L +ASI V R PL H+ QVI +D N
Sbjct: 387 LFEASIETGDRVWRMPLFEHYTRQVIDCQLADVN 420
>pdb|1J4E|A Chain A, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|B Chain B, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|C Chain C, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
pdb|1J4E|D Chain D, Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The
Substrate Dihydroxyacetone Phosphate
Length = 363
Score = 22.3 bits (46), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (74%)
Query: 54 IKLNPHNRNPLLKPYS 69
I LN N+ PLLKP++
Sbjct: 281 INLNAINKAPLLKPWA 296
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.134 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,099
Number of Sequences: 13198
Number of extensions: 14318
Number of successful extensions: 40
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 9
length of query: 85
length of database: 2,899,336
effective HSP length: 61
effective length of query: 24
effective length of database: 2,094,258
effective search space: 50262192
effective search space used: 50262192
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)