BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645759|ref|NP_207936.1| hypothetical protein
[Helicobacter pylori 26695]
(103 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 0.26
pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehy... 27 0.26
pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol D... 27 0.45
pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Co... 25 1.0
pdb|3CRD| Nmr Structure Of The Raidd Card Domain, 15 Stru... 24 2.9
pdb|2PBG| 6-Phospho-Beta-D-Galactosidase Form-B 23 3.8
pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C >gi... 23 3.8
pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) ... 23 3.8
pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3... 23 3.8
pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta 23 3.8
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta 23 3.8
pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defe... 23 3.8
pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst >... 23 3.8
pdb|1FN9|A Chain A, Crystal Structure Of The Reovirus Outer... 23 5.0
pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nuc... 23 6.5
pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl C... 23 6.5
pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase F... 22 8.5
pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydroge... 22 8.5
>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 27.3 bits (59), Expect = 0.26
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 35 KGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKK 82
K + +AN P ++ + S NVR+ +A+ + N+ K Q +P K
Sbjct: 263 KDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVK 310
>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh)
Reveals The Catalytic Residues Necessary For The
Two-Fold Oxidation
Length = 402
Score = 27.3 bits (59), Expect = 0.26
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 35 KGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKK 82
K + +AN P ++ + S NVR+ +A+ + N+ K Q +P K
Sbjct: 263 KDTKQLLANYNNIPQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVK 310
>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
pdb|1E3L|B Chain B, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase
Complex With Nadh
Length = 376
Score = 26.6 bits (57), Expect = 0.45
Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 7/52 (13%)
Query: 32 AWEKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKKK 83
AW+ G + I I+ P K+C VR + +A V + N PKKK
Sbjct: 14 AWKTGSPLCIEEIEVSP-------PKACEVRIQVIATCVCHTDINATDPKKK 58
>pdb|1E3I|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
And Inhibitor
pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
pdb|1E3I|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
And Inhibitor
pdb|1E3E|B Chain B, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh
Length = 376
Score = 25.4 bits (54), Expect = 1.0
Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 7/52 (13%)
Query: 32 AWEKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKKK 83
AW+ G + I I+ P K+C VR + +A V N PKKK
Sbjct: 14 AWKTGSPLCIEEIEVSP-------PKACEVRIQVIATCVCPTDINATDPKKK 58
>pdb|3CRD| Nmr Structure Of The Raidd Card Domain, 15 Structures
Length = 100
Score = 23.9 bits (50), Expect = 2.9
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 25 LVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEI 69
L+ +L S K F+ F+ ++QE P V LKK+ RE ++ ++
Sbjct: 57 LLDILPSRGPKAFDTFLDSLQEFP-WVREKLKKA---REEAMTDL 97
>pdb|2PBG| 6-Phospho-Beta-D-Galactosidase Form-B
Length = 468
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 34 EKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDN 72
+KG++ I + P P D + +VR + +I+ N
Sbjct: 205 DKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHN 243
>pdb|3PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-C
pdb|3PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-C
pdb|1PBG|B Chain B, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
pdb|1PBG|A Chain A, Mol_id: 1; Molecule: 6-Phospho-Beta-D-Galactosidase;
Chain: A, B; Synonym: Pgal; Ec: Ec 3.2.1.85; Engineered:
Yes; Other_details: Precipitant Polyethylene Glycol
Length = 468
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 34 EKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDN 72
+KG++ I + P P D + +VR + +I+ N
Sbjct: 205 DKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHN 243
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 73 LPKNQHTPKKKNFSTNEPFNNP 94
LP + TP NF+T E +NP
Sbjct: 335 LPNGRDTPALFNFTTQELSSNP 356
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
Length = 420
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 73 LPKNQHTPKKKNFSTNEPFNNP 94
LP + TP NF+T E +NP
Sbjct: 350 LPNGRDTPALFNFTTQELSSNP 371
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 73 LPKNQHTPKKKNFSTNEPFNNP 94
LP + TP NF+T E +NP
Sbjct: 316 LPNGRDTPALFNFTTQELSSNP 337
>pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 350
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (58%)
Query: 73 LPKNQHTPKKKNFSTNEPFNNP 94
LP + TP NF+T E +NP
Sbjct: 316 LPNGRDTPALFNFTTQELSSNP 337
>pdb|1HD8|A Chain A, Crystal Structure Of A Deacylation-Defective Mutant Of
Penicillin-Binding Protein 5 At 2.3 A Resolution
Length = 363
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 21 KDTDLVPVLESAWEKGFEVF 40
K+TDLV + AW G VF
Sbjct: 64 KETDLVTIGNDAWATGNPVF 83
>pdb|4PBG|A Chain A, 6-Phospho-Beta-Galactosidase Form-Cst
pdb|4PBG|B Chain B, 6-Phospho-Beta-Galactosidase Form-Cst
Length = 468
Score = 23.5 bits (49), Expect = 3.8
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 34 EKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIVDN 72
+KG++ I + P P D + +VR + +I+ N
Sbjct: 205 DKGYKGEIGVVHALPTKYPYDPENPADVRAAELEDIIHN 243
>pdb|1FN9|A Chain A, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
pdb|1FN9|B Chain B, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
Length = 365
Score = 23.1 bits (48), Expect = 5.0
Identities = 11/37 (29%), Positives = 18/37 (47%), Gaps = 1/37 (2%)
Query: 22 DTDLVPVLESAWEKGFEVFIANIQECPNSV-PSDLKK 57
D + + W++G F+A + E N V P DL +
Sbjct: 84 DVQFADRVTAHWKRGMLSFVAQMHEMMNDVSPDDLDR 120
>pdb|1BRW|B Chain B, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
pdb|1BRW|A Chain A, The Crystal Structure Of Pyrimidine Nucleoside
Phosphorylase In A Closed Conformation
Length = 433
Score = 22.7 bits (47), Expect = 6.5
Identities = 23/64 (35%), Positives = 28/64 (42%), Gaps = 9/64 (14%)
Query: 2 HDITKLCYTKPLGCVVLFSKDTDLVP---VLESAWEKG-----FEVFIANIQECPNSVPS 53
HD+T+LC T V L K L +LE A G F+ F+A Q SV
Sbjct: 266 HDLTELCLTLGSHMVYLAEKAPSLDEARRLLEEAIRSGAAIAAFKTFLA-AQGGDASVVD 324
Query: 54 DLKK 57
DL K
Sbjct: 325 DLDK 328
>pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein
Reductase From Brassica Napus Complexed With Nadp+
Length = 244
Score = 22.7 bits (47), Expect = 6.5
Identities = 10/51 (19%), Positives = 26/51 (50%)
Query: 20 SKDTDLVPVLESAWEKGFEVFIANIQECPNSVPSDLKKSCNVRERSVAEIV 70
++DT L+ + +S W++ ++ + + C + + K R ++A +V
Sbjct: 90 TRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV 140
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
Length = 763
Score = 22.3 bits (46), Expect = 8.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 PNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKKKN 84
PNS P+ S ++ ++V E + K KKKN
Sbjct: 503 PNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKN 539
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
Length = 1332
Score = 22.3 bits (46), Expect = 8.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 48 PNSVPSDLKKSCNVRERSVAEIVDNLPKNQHTPKKKN 84
PNS P+ S ++ ++V E + K KKKN
Sbjct: 1072 PNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKN 1108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,910
Number of Sequences: 13198
Number of extensions: 23768
Number of successful extensions: 40
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 18
length of query: 103
length of database: 2,899,336
effective HSP length: 79
effective length of query: 24
effective length of database: 1,856,694
effective search space: 44560656
effective search space used: 44560656
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)