BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645760|ref|NP_207937.1| hypothetical protein
[Helicobacter pylori 26695]
(169 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis... 28 0.42
pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis... 28 0.71
pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain ... 25 3.5
pdb|1JAJ|A Chain A, Solution Structure Of Dna Polymerase X ... 25 6.1
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 25 6.1
pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase... 24 7.9
pdb|1NSA| Three-Dimensional Structure Of Porcine Procarbo... 24 7.9
>pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
Length = 356
Score = 28.5 bits (62), Expect = 0.42
Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 73 LLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVNKS- 131
++ + + ++ P+EEL+ I E E P++ + +E EK ++ E + K+
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 132 ---GIIQSFNHNIAQQNQVKL-RVGRVMFKFTNESEDK 165
G++ NH I ++ + G F + E ++K
Sbjct: 75 LDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEK 112
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 27.7 bits (60), Expect = 0.71
Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 73 LLVLIRSFLEPEEELKRIYFYVSEPFTEVEPRIKGNKNEELEEYKEKNPKDYEERVNKS- 131
++ + + ++ P+EEL+ I E E P++ + +E EK ++ E + K+
Sbjct: 15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKAS 74
Query: 132 ---GIIQSFNHNI-AQQNQVKLRVGRVMFKFTNESEDK 165
G+ NH I A + + G F + E ++K
Sbjct: 75 LDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEK 112
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
pdb|1MHD|B Chain B, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
Length = 132
Score = 25.4 bits (54), Expect = 3.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 106 KGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNIAQQN 145
KG +N + E++ EK K +++ K+G + I QN
Sbjct: 20 KGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQN 59
>pdb|1JAJ|A Chain A, Solution Structure Of Dna Polymerase X From The African
Swine Fever Virus
pdb|1JQR|A Chain A, Nmr Structure Of The African Swine Fever Virus Dna
Polymerase X
Length = 174
Score = 24.6 bits (52), Expect = 6.1
Identities = 12/44 (27%), Positives = 19/44 (42%)
Query: 39 IFVDWENLLADLKAIQETDERLKEPNFNFNNPEQLLVLIRSFLE 82
+F++WE L E F+F P L+ IR+ L+
Sbjct: 88 LFIEWEKKTYQLDLFTALAEEKPYAIFHFTGPVSYLIRIRAALK 131
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 24.6 bits (52), Expect = 6.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 100 EVEPRIKGNKNEELEEYKEKNPKDYEER 127
EVE IK ++ EE + +EK K+ +E+
Sbjct: 232 EVEQLIKKHEEEEAKAEREKKEKEQKEK 259
>pdb|1IW7|C Chain C, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|M Chain M, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 1119
Score = 24.3 bits (51), Expect = 7.9
Identities = 16/62 (25%), Positives = 29/62 (45%), Gaps = 6/62 (9%)
Query: 42 DWENLLADLKAIQETDERLKEPNFNFNNPEQLLVLIRSFLEPEEELKR------IYFYVS 95
D E L +L A E + L + + PE+ L+ + + L P + KR +Y ++
Sbjct: 203 DQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPGDPPKRDKAVAYVYGLIA 262
Query: 96 EP 97
+P
Sbjct: 263 DP 264
>pdb|1NSA| Three-Dimensional Structure Of Porcine Procarboxypeptidase B: A
Structural Basis Of Its Inactivity
Length = 395
Score = 24.3 bits (51), Expect = 7.9
Identities = 18/79 (22%), Positives = 34/79 (42%), Gaps = 11/79 (13%)
Query: 88 KRIYFYVSEPFTEVEP------RIKGNKNEELEEYKEKNPKDYEERVNKSGIIQSFNHNI 141
++I F+ + T+++P R+K +E++ E+N YE +N +
Sbjct: 27 RQIDFWKPDSVTQIKPHSTVDFRVKAEDILAVEDFLEQNELQYEVLINNLRSVLE----- 81
Query: 142 AQQNQVKLRVGRVMFKFTN 160
AQ + V G K+ N
Sbjct: 82 AQFDSVSRTTGHSYEKYNN 100
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,002,432
Number of Sequences: 13198
Number of extensions: 40671
Number of successful extensions: 80
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 7
length of query: 169
length of database: 2,899,336
effective HSP length: 82
effective length of query: 87
effective length of database: 1,817,100
effective search space: 158087700
effective search space used: 158087700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)