BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645761|ref|NP_207938.1| ribosomal protein L19
(rpl19) [Helicobacter pylori 26695]
(118 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosoma... 105 1e-24
pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase T... 25 2.3
pdb|1IRE|B Chain B, Crystal Structure Of Co-Type Nitrile Hy... 25 2.3
pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Comple... 25 3.0
pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrog... 25 3.0
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombina... 25 3.0
pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombina... 25 3.0
pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant >g... 25 3.0
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 24 5.0
pdb|1FO8|A Chain A, Crystal Structure Of N-Acetylglucosamin... 23 8.6
pdb|1FOA|A Chain A, Crystal Structure Of N-Acetylglucosamin... 23 8.6
>pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 166
Score = 105 bits (263), Expect = 1e-24
Identities = 54/101 (53%), Positives = 72/101 (70%), Gaps = 1/101 (0%)
Query: 17 KTMPAFKAGDTLRLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEKI 76
+ +P F+ GDT+R+ ++EG +TR+Q FEGV IAI G+G K+F VRKI GVE++
Sbjct: 22 RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGE-GVERV 80
Query: 77 FPFYSESLASVEVLRVGRVRRAKLYYLRDRRGKAARIKEVR 117
FPF S + V ++ G+VRRAKLYYLR+ RGKAARIK R
Sbjct: 81 FPFASPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDR 121
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 25.0 bits (53), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 15 KDKTMPAFKAGDTLRLGITIKEGEKTRTQYFE 46
K K +P FK D L G + GE+++ + E
Sbjct: 231 KAKDLPTFKDNDFLNEGQKLHVGEESKKNFLE 262
>pdb|1IRE|B Chain B, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudonocardia Thermophila
Length = 228
Score = 25.0 bits (53), Expect = 2.3
Identities = 10/28 (35%), Positives = 13/28 (45%)
Query: 20 PAFKAGDTLRLGITIKEGEKTRTQYFEG 47
P FK GD +R +G R +Y G
Sbjct: 137 PKFKEGDVVRFSTASPKGHARRARYVRG 164
>pdb|1LTD|A Chain A, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
pdb|1LTD|B Chain B, Flavocytochrome B2 (E.C.1.1.2.3) Complexed With Sulfite
Length = 506
Score = 24.6 bits (52), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 17 KTMPAFKAGDTL-RLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEK 75
+TMP + + +L + + G + T + +C+ +G G+ + F GVEK
Sbjct: 385 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 444
Query: 76 IFPFYSESL-ASVEVLRVGRVRRAK 99
+ + S+ +L V + K
Sbjct: 445 AIEILRDEIEMSMRLLGVTSIAELK 469
>pdb|1LCO|A Chain A, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|A Chain A, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
pdb|1LCO|B Chain B, Mol_id: 1; Molecule: L-Lactate Dehydrogenase; Chain: A, B;
Synonym: Cytochrome C Oxidoreductase, Flavocytochrome
B2; Ec: 1.1.2.3; Engineered: Yes; Mutation: Tyr 143 Phe;
Heterogen: Phenyl-Pyruvate
pdb|1LDC|B Chain B, L-Lactate Dehydrogenase: Cytochrome C Oxidoreductase
(Flavocytochrome B2) (E.C.1.1.2.3) Mutant With Tyr 143
Replaced By Phe (Y143f) Complexed With Pyruvate
Length = 511
Score = 24.6 bits (52), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 17 KTMPAFKAGDTL-RLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEK 75
+TMP + + +L + + G + T + +C+ +G G+ + F GVEK
Sbjct: 390 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 449
Query: 76 IFPFYSESL-ASVEVLRVGRVRRAK 99
+ + S+ +L V + K
Sbjct: 450 AIEILRDEIEMSMRLLGVTSIAELK 474
>pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|A Chain A, Flavocytochrome b2 (E.C.1.1.2.3)
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1FCB|B Chain B, Flavocytochrome b2 (E.C.1.1.2.3)
Length = 511
Score = 24.6 bits (52), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 17 KTMPAFKAGDTL-RLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEK 75
+TMP + + +L + + G + T + +C+ +G G+ + F GVEK
Sbjct: 390 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 449
Query: 76 IFPFYSESL-ASVEVLRVGRVRRAK 99
+ + S+ +L V + K
Sbjct: 450 AIEILRDEIEMSMRLLGVTSIAELK 474
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild-Type Enzyme
Length = 412
Score = 24.6 bits (52), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 17 KTMPAFKAGDTL-RLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEK 75
+TMP + + +L + + G + T + +C+ +G G+ + F GVEK
Sbjct: 291 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 350
Query: 76 IFPFYSESL-ASVEVLRVGRVRRAK 99
+ + S+ +L V + K
Sbjct: 351 AIEILRDEIEMSMRLLGVTSIAELK 375
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 24.6 bits (52), Expect = 3.0
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 17 KTMPAFKAGDTL-RLGITIKEGEKTRTQYFEGVCIAIRGNGVDKTFCVRKIGANNIGVEK 75
+TMP + + +L + + G + T + +C+ +G G+ + F GVEK
Sbjct: 289 ETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEK 348
Query: 76 IFPFYSESL-ASVEVLRVGRVRRAK 99
+ + S+ +L V + K
Sbjct: 349 AIEILRDEIEMSMRLLGVTSIAELK 373
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 23.9 bits (50), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 53 RGNGVDKTFCVRKIGANNIGVEKIFPFYSESLASV 87
R NG+D+T C ++ +NIG Y+ SV
Sbjct: 289 RRNGIDETICTMRL-RHNIGQTSSPDIYNPQAGSV 322
>pdb|1FO8|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 343
Score = 23.1 bits (48), Expect = 8.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 58 DKTFCVRKIGANNIGVEKIFPFYSESLASVEVLRVGR 94
D+ F R GA + VEK+ + L V V GR
Sbjct: 253 DRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGR 289
>pdb|1FOA|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
pdb|1FO9|A Chain A, Crystal Structure Of N-Acetylglucosaminyltransferase I
Length = 348
Score = 23.1 bits (48), Expect = 8.6
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 58 DKTFCVRKIGANNIGVEKIFPFYSESLASVEVLRVGR 94
D+ F R GA + VEK+ + L V V GR
Sbjct: 258 DRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGR 294
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.141 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 626,119
Number of Sequences: 13198
Number of extensions: 23924
Number of successful extensions: 55
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 2,899,336
effective HSP length: 77
effective length of query: 41
effective length of database: 1,883,090
effective search space: 77206690
effective search space used: 77206690
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)