BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645762|ref|NP_207939.1| tRNA
(guanine-N1)-methyltransferase (trmD) [Helicobacter pylori 26695]
(229 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In... 27 2.6
pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null... 26 3.4
pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-... 25 9.8
pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-... 25 9.8
pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-... 25 9.8
pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Repla... 25 9.8
>pdb|1JIL|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With
Sb284485
pdb|1JIK|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
243545
pdb|1JII|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
219383
pdb|1JIJ|A Chain A, Crystal Structure Of S. Aureus Tyrrs In Complex With Sb-
239629
Length = 420
Score = 26.6 bits (57), Expect = 2.6
Identities = 19/62 (30%), Positives = 25/62 (39%), Gaps = 14/62 (22%)
Query: 33 LEVLNLRDFSANKYQKADHTLIGGGAGQILDP------------EMVENALHSVKNPKHT 80
L L LR F + ++ LIGGG G I DP E V+ + + H
Sbjct: 52 LPFLTLRRFQEHGHRPI--VLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109
Query: 81 IF 82
IF
Sbjct: 110 IF 111
>pdb|1IRL| Mol_id: 1; Molecule: Interleukin-2; Chain: Null; Engineered:
Yes; Mutation: F42a
Length = 133
Score = 26.2 bits (56), Expect = 3.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 61 ILDPEMVENALHSVKNPKHTIFLSA 85
+LD +M+ N +++ KNPK T L+A
Sbjct: 18 LLDLQMILNGINNYKNPKLTRMLTA 42
>pdb|1M47|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M48|A Chain A, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M48|B Chain B, Crystal Structure Of Human Il-2 Complexed With
(R)-N-[2-[1-
(Aminoiminomethyl)-3-Piperidinyl]-1-Oxoethyl]-4-
(Phenylethynyl)-L-Phenylalanine Methyl Ester
pdb|1M49|A Chain A, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M49|B Chain B, Crystal Structure Of Human Interleukin-2 Complexed With
Sp- 1985
pdb|1M4C|A Chain A, Crystal Structure Of Human Interleukin-2
pdb|1M4C|B Chain B, Crystal Structure Of Human Interleukin-2
Length = 133
Score = 24.6 bits (52), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 61 ILDPEMVENALHSVKNPKHTIFLS 84
+LD +M+ N +++ KNPK T L+
Sbjct: 18 LLDLQMILNGINNYKNPKLTRMLT 41
>pdb|1M4A|A Chain A, Crystal Structure Of Human Interleukin-2 Y31c Covalently
Modified At C31 With (1h-Indol-3-Yl)-(2-Mercapto-
Ethoxyimino)-Acetic Acid
Length = 133
Score = 24.6 bits (52), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 61 ILDPEMVENALHSVKNPKHTIFLS 84
+LD +M+ N +++ KNPK T L+
Sbjct: 18 LLDLQMILNGINNCKNPKLTRMLT 41
>pdb|1M4B|A Chain A, Crystal Structure Of Human Interleukin-2 K43c Covalently
Modified At C43 With 2-[2-(2-Cyclohexyl-2-Guanidino-
Acetylamino)-Acetylamino]-N-(3-Mercapto-Propyl)-
Propionamide
Length = 133
Score = 24.6 bits (52), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 61 ILDPEMVENALHSVKNPKHTIFLS 84
+LD +M+ N +++ KNPK T L+
Sbjct: 18 LLDLQMILNGINNYKNPKLTRMLT 41
>pdb|3INK|C Chain C, Interleukin 2 Mutant With Cys 125 Replaced By Ala
(C125a)
pdb|3INK|D Chain D, Interleukin 2 Mutant With Cys 125 Replaced By Ala
(C125a)
Length = 133
Score = 24.6 bits (52), Expect = 9.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 61 ILDPEMVENALHSVKNPKHTIFLS 84
+LD +M+ N +++ KNPK T L+
Sbjct: 18 LLDLQMILNGINNYKNPKLTRMLT 41
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,302,847
Number of Sequences: 13198
Number of extensions: 52506
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 6
length of query: 229
length of database: 2,899,336
effective HSP length: 85
effective length of query: 144
effective length of database: 1,777,506
effective search space: 255960864
effective search space used: 255960864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)