BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645763|ref|NP_207940.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(184 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Sub... 25 5.3
pdb|1BA3| Firefly Luciferase In Complex With Bromoform >g... 25 5.3
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of ... 25 7.0
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamin... 25 7.0
pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphori... 24 9.1
pdb|1CNV| Crystal Structure Of Concanavalin B At 1.65 A R... 24 9.1
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 25.0 bits (53), Expect = 5.3
Identities = 20/65 (30%), Positives = 32/65 (48%), Gaps = 1/65 (1%)
Query: 33 KKGVKVSVAPLNAFSCVSSFKEYIIHSYEHAKNLLFLETIQTPEKAKELTNLGLFMSEAE 92
KK +K + NA V S E E +++ L+ I E +ELT+ +++E +
Sbjct: 308 KKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEY-QELTSFDEYVAELD 366
Query: 93 SKKLC 97
SK LC
Sbjct: 367 SKLLC 371
>pdb|1BA3| Firefly Luciferase In Complex With Bromoform
pdb|1LCI| Firefly Luciferase
Length = 550
Score = 25.0 bits (53), Expect = 5.3
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 110 VGLSVVEENEILGK--VIEIQRISQTDYFLVETTLNLVEKGLAKIFLIPYRDFYIQEILL 167
+G++V N+I + ++ ISQ T + + +KGL KI + + IQ+I++
Sbjct: 98 IGVAVAPANDIYNERELLNSMNISQP------TVVFVSKKGLQKILNVQKKLPIIQKIII 151
Query: 168 QDKK 171
D K
Sbjct: 152 MDSK 155
>pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
Length = 456
Score = 24.6 bits (52), Expect = 7.0
Identities = 14/58 (24%), Positives = 29/58 (49%), Gaps = 8/58 (13%)
Query: 83 NLGLFMSEAESKKLCVLK------EGEFFYCDLVGLSVVEENEILGKVIEIQRISQTD 134
N G+ ++ K + K +GE++ D++ L+ E EI+ + QR+S+ +
Sbjct: 169 NTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIV--AVHPQRLSEVE 224
>pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
Length = 331
Score = 24.6 bits (52), Expect = 7.0
Identities = 14/58 (24%), Positives = 29/58 (49%), Gaps = 8/58 (13%)
Query: 83 NLGLFMSEAESKKLCVLK------EGEFFYCDLVGLSVVEENEILGKVIEIQRISQTD 134
N G+ ++ K + K +GE++ D++ L+ E EI+ + QR+S+ +
Sbjct: 169 NTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIV--AVHPQRLSEVE 224
>pdb|1HGX|A Chain A, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
pdb|1HGX|B Chain B, Hypoxanthine-Guanine-Xanthine Phosphoribosyltransferase
(Hgxprtase)
Length = 183
Score = 24.3 bits (51), Expect = 9.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 76 EKAKELTNLGLFMSEAESKKLCVLKEGEFFYCDLV 110
E A ELT F + +CVL FFY DL+
Sbjct: 26 ELAAELTE---FYEDKNPVMICVLTGAVFFYTDLL 57
>pdb|1CNV| Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 24.3 bits (51), Expect = 9.1
Identities = 23/63 (36%), Positives = 29/63 (45%), Gaps = 12/63 (19%)
Query: 6 LVGRIGKSVGLNGGLRLHLESDFPECLKKGVKVSVA---PLNAFSCVSS-----FKEYII 57
L G G SVG LES EC + GVKV +A P +S S+ EY +
Sbjct: 50 LEGVCGPSVGNPCSF---LESQIKECQRMGVKVFLALGGPKGTYSACSADYAKDLAEY-L 105
Query: 58 HSY 60
H+Y
Sbjct: 106 HTY 108
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 939,819
Number of Sequences: 13198
Number of extensions: 35000
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 6
length of query: 184
length of database: 2,899,336
effective HSP length: 83
effective length of query: 101
effective length of database: 1,803,902
effective search space: 182194102
effective search space used: 182194102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)