BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645764|ref|NP_207941.1| hypothetical protein
[Helicobacter pylori 26695]
         (115 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1G5G|A  Chain A, Fragment Of Fusion Protein From Newcast...    26  0.97
pdb|1D3H|A  Chain A, Human Dihydroorotate Dehydrogenase Comp...    23  8.2

>pdb|1G5G|A Chain A, Fragment Of Fusion Protein From Newcastle Disease Virus
 pdb|1G5G|B Chain B, Fragment Of Fusion Protein From Newcastle Disease Virus
 pdb|1G5G|C Chain C, Fragment Of Fusion Protein From Newcastle Disease Virus
 pdb|1G5G|D Chain D, Fragment Of Fusion Protein From Newcastle Disease Virus
 pdb|1G5G|E Chain E, Fragment Of Fusion Protein From Newcastle Disease Virus
 pdb|1G5G|F Chain F, Fragment Of Fusion Protein From Newcastle Disease Virus
          Length = 481

 Score = 26.2 bits (56), Expect = 0.97
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 18  DYSHCVATFLEKYLKKVVSFPQA 40
           D S+C+ T L+ Y  ++V+FP +
Sbjct: 303 DTSYCIETDLDLYCTRIVTFPMS 325



>pdb|1D3H|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
           Antiproliferative Agent A771726
 pdb|1D3G|A Chain A, Human Dihydroorotate Dehydrogenase Complexed With
           Brequinar Analog
          Length = 367

 Score = 23.1 bits (48), Expect = 8.2
 Identities = 16/58 (27%), Positives = 25/58 (42%)

Query: 43  VEHTLLEDKVKQITIYTHPSDMGHVIGKEGKMVSAIKAFISGVKAKDGFSYKIVVFAS 100
           VEH L   + KQ  +      +G  +GK    V A + +  GV+     +  +VV  S
Sbjct: 128 VEHRLRARQQKQAKLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVS 185



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.317    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 686,855
Number of Sequences: 13198
Number of extensions: 23457
Number of successful extensions: 38
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 115
length of database: 2,899,336
effective HSP length: 76
effective length of query: 39
effective length of database: 1,896,288
effective search space: 73955232
effective search space used: 73955232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)