BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645766|ref|NP_207943.1| signal recognition particle
protein (ffh) [Helicobacter pylori 26695]
(448 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 286 4e-78
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 197 2e-51
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 193 3e-50
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 192 8e-50
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 190 3e-49
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 158 1e-39
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 156 4e-39
pdb|1FTS| Signal Recognition Particle Receptor From E. Coli 155 7e-39
pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rn... 97 5e-21
pdb|1DUL|A Chain A, Structure Of The Ribonucleoprotein Core... 64 3e-11
pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary... 64 3e-11
pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subd... 57 4e-09
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 31 0.25
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophi... 30 0.55
pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotoba... 30 0.72
pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a 30 0.72
pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structu... 30 0.72
pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v 30 0.72
pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junct... 30 0.72
pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant 30 0.72
pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant 30 0.72
pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcu... 30 0.72
pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of Th... 30 0.72
pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridi... 29 0.94
pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator ... 29 0.94
pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphospha... 29 1.2
pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 29 1.2
pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bi... 29 1.2
pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phos... 28 1.6
pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complex... 28 1.6
pdb|1ION|A Chain A, The Septum Site-Determining Protein Min... 28 1.6
pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue ... 28 1.6
pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant 28 1.6
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 28 2.1
pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli 28 2.1
pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl C... 28 2.1
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoser... 28 2.1
pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phos... 28 2.1
pdb|3HAD|A Chain A, Biochemical Characterization And Struct... 28 2.7
pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Co... 28 2.7
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidas... 28 2.7
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 28 2.7
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidas... 28 2.7
pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mu... 28 2.7
pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma >gi... 28 2.7
pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Compl... 28 2.7
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 28 2.7
pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-T... 27 3.6
pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyri... 27 3.6
pdb|1XVA|A Chain A, Methyltransferase >gi|1942408|pdb|1XVA|... 27 4.7
pdb|1NSA| Three-Dimensional Structure Of Porcine Procarbo... 27 4.7
pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glyci... 27 4.7
pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulator... 26 8.0
pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex Wit... 26 8.0
pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From ... 26 8.0
pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmurama... 26 8.0
pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex >... 26 8.0
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 286 bits (731), Expect = 4e-78
Identities = 176/437 (40%), Positives = 262/437 (59%), Gaps = 25/437 (5%)
Query: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
MFQ LS + A+ ++R + E+ L L E+++ L+ DV+ +V R+ +++V +
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEA- 59
Query: 59 LNGIGKQ--QFLDALEKSLLEILSAKGSSGFTFAQTPP----TVVLMAGLQGSGKTTTTA 112
+GKQ + L E L + A + A+ P + + GLQGSGKTTT A
Sbjct: 60 ---LGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAA 116
Query: 113 KLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-YEENKSVKEIASNALKRA 171
KLA Y K K ++ LL A D QR AA EQL++LGE+VGV V + +S + I ++A
Sbjct: 117 KLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176
Query: 172 KEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEE 231
+ D++LVD+AGRL ID+ LM EL +KE+L P EVL V DA++GQ+ + A F+E+
Sbjct: 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK 236
Query: 232 IGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291
+GV+G+VL+K D D++GG AL + G P+ F G EK L+ F PER+ GR++G GD
Sbjct: 237 VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD 296
Query: 292 IVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNM 351
+ SLAEK + EA +K+L + DFL Q++ +K+LG S ++ ++PG +
Sbjct: 297 VASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPG---V 348
Query: 352 ASALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIK 411
LK +K+++A+V SMT +E+++P ILNGSRRKRIA GSG V E+NR IK
Sbjct: 349 PQGLK----VDEKAIKRLEAIVLSMTPEERKDPRILNGSRRKRIAKGSGTSVQEVNRFIK 404
Query: 412 RFDQASKMAKRLTNKKG 428
F++ + K L KKG
Sbjct: 405 AFEEMKALMKSLEKKKG 421
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 197 bits (502), Expect = 2e-51
Identities = 122/300 (40%), Positives = 181/300 (59%), Gaps = 13/300 (4%)
Query: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
MFQ LS + A+ ++R + E+ L L E+++ L+ DV+ +VAR+ +++V +
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEA- 59
Query: 59 LNGIGKQ--QFLDALEKSLLEILSAKGSSGFTFAQTPP----TVVLMAGLQGSGKTTTTA 112
+GKQ + L E L + A + A+ P + + GLQGSGKTTT A
Sbjct: 60 ---LGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAA 116
Query: 113 KLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-YEENKSVKEIASNALKRA 171
KLA Y K K ++ LL A D QR AA EQL++LGE+VGV V + +S + I ++A
Sbjct: 117 KLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176
Query: 172 KEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEE 231
+ D++LVD+AGRL ID+ LM EL +KE+L P EVL V DA++GQ+ + A F+E+
Sbjct: 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK 236
Query: 232 IGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAGD 291
+GV+G+VL+K D D++GG AL + G P+ F G EK L+ F PER+ GR++G GD
Sbjct: 237 VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMGD 296
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 193 bits (491), Expect = 3e-50
Identities = 120/297 (40%), Positives = 179/297 (59%), Gaps = 13/297 (4%)
Query: 1 MFQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTK 58
MFQ LS + A+ ++R + E+ L L E+++ L+ DV+ +VAR+ +++V +
Sbjct: 1 MFQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVARDFVERVREEA- 59
Query: 59 LNGIGKQ--QFLDALEKSLLEILSAKGSSGFTFAQTPP----TVVLMAGLQGSGKTTTTA 112
+GKQ + L E L + A + A+ P + + GLQGSGKTTT A
Sbjct: 60 ---LGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAA 116
Query: 113 KLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-YEENKSVKEIASNALKRA 171
KLA Y K K ++ LL A D QR AA EQL++LGE+VGV V + +S + I ++A
Sbjct: 117 KLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176
Query: 172 KEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEE 231
+ D++LVD+AGRL ID+ LM EL +KE+L P EVL V DA++GQ+ + A F+E+
Sbjct: 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEK 236
Query: 232 IGVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMG 288
+GV+G+VL+K D D++GG AL + G P+ F G EK L+ F PER+ GR++G
Sbjct: 237 VGVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 293
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 192 bits (487), Expect = 8e-50
Identities = 119/298 (39%), Positives = 178/298 (58%), Gaps = 13/298 (4%)
Query: 2 FQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKL 59
FQ LS + A+ ++R + E+ L L E+++ L+ DV+ +V R+ +++V +
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEA-- 58
Query: 60 NGIGKQ--QFLDALEKSLLEILSAKGSSGFTFAQTPP----TVVLMAGLQGSGKTTTTAK 113
+GKQ + L E L + A + A+ P + + GLQGSGKTTT AK
Sbjct: 59 --LGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAK 116
Query: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-YEENKSVKEIASNALKRAK 172
LA Y K K ++ LL A D QR AA EQL++LGE+VGV V + +S + I ++A+
Sbjct: 117 LALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 176
Query: 173 EAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEI 232
D++LVD+AGRL ID+ LM EL +KE+L P EVL V DA++GQ+ + A F+E++
Sbjct: 177 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV 236
Query: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMGAG 290
GV+G+VL+K D D++GG AL + G P+ F G EK L+ F PER+ GR++G G
Sbjct: 237 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILGMG 294
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 190 bits (482), Expect = 3e-49
Identities = 118/296 (39%), Positives = 177/296 (58%), Gaps = 13/296 (4%)
Query: 2 FQALSDGFKNALNKIRFQD--DEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKL 59
FQ LS + A+ ++R + E+ L L E+++ L+ DV+ +V R+ +++V +
Sbjct: 1 FQQLSARLQEAIGRLRGRGRITEEDLKATLREIRRALMDADVNLEVTRDFVERVREEA-- 58
Query: 60 NGIGKQ--QFLDALEKSLLEILSAKGSSGFTFAQTPP----TVVLMAGLQGSGKTTTTAK 113
+GKQ + L E L + A + A+ P + + GLQGSGKTTT AK
Sbjct: 59 --LGKQVLESLTPAEVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAK 116
Query: 114 LAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVF-YEENKSVKEIASNALKRAK 172
LA Y K K ++ LL A D QR AA EQL++LGE+VGV V + +S + I ++A+
Sbjct: 117 LALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR 176
Query: 173 EAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEI 232
D++LVD+AGRL ID+ LM EL +KE+L P EVL V DA++GQ+ + A F+E++
Sbjct: 177 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV 236
Query: 233 GVSGVVLSKFDSDSKGGIALGITYQLGLPLRFIGSGEKIPDLDVFVPERIVGRLMG 288
GV+G+VL+K D D++GG AL + G P+ F G EK L+ F PER+ GR++G
Sbjct: 237 GVTGLVLTKLDGDARGGAALSARHVTGKPIYFAGVSEKPEGLEPFYPERLAGRILG 292
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 158 bits (400), Expect = 1e-39
Identities = 95/272 (34%), Positives = 153/272 (55%), Gaps = 7/272 (2%)
Query: 22 EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNG----IGKQQFLDALEKSLLE 77
+KA++ + EL+K+L+ DV+ K+ L K++ + K I ++++ + L
Sbjct: 22 DKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELS 81
Query: 78 ILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAA 137
L P V+++ G+QG+GKTTT KLA++ K K KV L D+ R AA
Sbjct: 82 NLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAA 141
Query: 138 VEQLKVLGEQVGVEVFYEEN-KSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKE--LM 194
+EQL+ LG+Q+GV V+ E K V IA +++ + ++++VD+AGR +E L+
Sbjct: 142 LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALL 201
Query: 195 QELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGI 254
+E+K + E + P EV V DA GQ A+ FN+ + ++++K D +KGG AL
Sbjct: 202 EEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 261
Query: 255 TYQLGLPLRFIGSGEKIPDLDVFVPERIVGRL 286
G ++FIG+GEKI +L+VF P R V RL
Sbjct: 262 VAATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 156 bits (395), Expect = 4e-39
Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 7/272 (2%)
Query: 22 EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNG----IGKQQFLDALEKSLLE 77
+KA++ + EL+K+L+ DV+ K+ L K++ + K I ++++ + L
Sbjct: 22 DKAVEDFIKELQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELS 81
Query: 78 ILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAA 137
L P V+++ G+QG+GK TT KLA++ K K KV L D+ R AA
Sbjct: 82 NLFGGDKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAA 141
Query: 138 VEQLKVLGEQVGVEVFYEEN-KSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKE--LM 194
+EQL+ LG+Q+GV V+ E K V IA +++ + ++++VD+AGR +E L+
Sbjct: 142 LEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALL 201
Query: 195 QELKEVKEILNPHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGI 254
+E+K + E + P EV V DA GQ A+ FN+ + ++++K D +KGG AL
Sbjct: 202 EEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGALSA 261
Query: 255 TYQLGLPLRFIGSGEKIPDLDVFVPERIVGRL 286
G ++FIG+GEKI +L+VF P R V RL
Sbjct: 262 VAATGATIKFIGTGEKIDELEVFNPRRFVARL 293
>pdb|1FTS| Signal Recognition Particle Receptor From E. Coli
Length = 295
Score = 155 bits (393), Expect = 7e-39
Identities = 92/272 (33%), Positives = 145/272 (52%), Gaps = 7/272 (2%)
Query: 22 EKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKLNGIGKQQFLDALEKSLLEILSA 81
+K D +EL++ LL DV + R+++ + + + L L K + + A
Sbjct: 21 KKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILA 80
Query: 82 KGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQL 141
K P V+LM G+ G GKTTT KLA + + K V+L A D R AAVEQL
Sbjct: 81 KVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL 140
Query: 142 KVLGEQVGVEVFYEENKSVK-EIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEV 200
+V G++ + V + + + +A++ AK DVL+ D+AGRL LM+ELK++
Sbjct: 141 QVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKI 200
Query: 201 KEILN------PHEVLYVADALSGQDGVKSANTFNEEIGVSGVVLSKFDSDSKGGIALGI 254
++ PHEV+ DA +GQ+ V A F+E +G++G+ L+K D +KGG+ +
Sbjct: 201 VRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSV 260
Query: 255 TYQLGLPLRFIGSGEKIPDLDVFVPERIVGRL 286
Q G+P+R+IG GE+I DL F + + L
Sbjct: 261 ADQFGIPIRYIGVGERIEDLRPFKADDFIEAL 292
>pdb|1HQ1|A Chain A, Structural And Energetic Analysis Of Rna Recognition By A
Universally Conserved Protein From The Signal
Recognition Particle
Length = 105
Score = 96.7 bits (239), Expect = 5e-21
Identities = 43/104 (41%), Positives = 76/104 (72%), Gaps = 2/104 (1%)
Query: 320 FTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTKK 379
F NDFL Q+ ++K +G M+SL+ +PG+G + +K + ++ + V+ ++A++NSMT K
Sbjct: 2 FDLNDFLEQLRQMKNMGGMASLMGKLPGMGQIPDNVK-SQMDDKVLVR-MEAIINSMTMK 59
Query: 380 EQENPEILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMAKRL 423
E+ PEI+ GSR++RIA GSG++V ++NR++K+FD +M K++
Sbjct: 60 ERAKPEIIKGSRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103
>pdb|1DUL|A Chain A, Structure Of The Ribonucleoprotein Core Of The E. Coli
Signal Recognition Particle
Length = 69
Score = 64.3 bits (155), Expect = 3e-11
Identities = 30/67 (44%), Positives = 46/67 (67%), Gaps = 3/67 (4%)
Query: 359 DLESSLEVK---KIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRFDQ 415
DL LE K + +A++NS T KE+ PEI+ GSR++RIA GSG +V ++NR++K+FD
Sbjct: 2 DLNDFLEQKVLVRXEAIINSXTXKERAKPEIIKGSRKRRIAAGSGXQVQDVNRLLKQFDD 61
Query: 416 ASKMAKR 422
+ K+
Sbjct: 62 XQRXXKK 68
>pdb|1MFQ|C Chain C, Crystal Structure Analysis Of A Ternary S-Domain Complex
Of Human Signal Recognition Particle
Length = 129
Score = 63.9 bits (154), Expect = 3e-11
Identities = 33/119 (27%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Query: 316 KKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNS 375
K GQFT D Q + + K+G S ++ MIPG G + K + ES +KK+ +++S
Sbjct: 11 KHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMS-KGNEQESMARLKKLMTIMDS 69
Query: 376 MTKKEQENPE-----ILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMAKRLTNKKGI 429
M +E ++ + R +R+A GSG+ ++ ++ ++ + ++M K++ KG+
Sbjct: 70 MNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGL 128
>pdb|1QB2|B Chain B, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
pdb|1QB2|A Chain A, Crystal Structure Of The Conserved Subdomain Of Human
Protein Srp54m At 2.1a Resolution: Evidence For The
Mechanism Of Signal Peptide Binding
Length = 109
Score = 57.0 bits (136), Expect = 4e-09
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 6/110 (5%)
Query: 319 QFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMASALKDTDLESSLEVKKIKAMVNSMTK 378
QFT D Q + + K+G S ++ MIPG G + K + ES +KK+ +++SM
Sbjct: 1 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMS-KGNEQESMARLKKLMTIMDSMND 59
Query: 379 KEQENPE-----ILNGSRRKRIALGSGLEVSEINRIIKRFDQASKMAKRL 423
+E ++ + R +R+A GSG+ ++ ++ ++ + ++M K++
Sbjct: 60 QELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKM 109
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 31.2 bits (69), Expect = 0.25
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 12/96 (12%)
Query: 86 GFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL---------QRLA 136
G TF P V + G GSGK+T A L + + ++LL L +++A
Sbjct: 35 GLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVA 94
Query: 137 AV-EQLKVLGEQVGVEVFY--EENKSVKEIASNALK 169
AV ++ +V G + + Y + +++EI + A+K
Sbjct: 95 AVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
>pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 30.0 bits (66), Expect = 0.55
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 115 AHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIASNALKRAKEA 174
A +LK K +++ AC+ A+E+LK +++ V VF VKE ALK+++
Sbjct: 55 AGFLKDKGVDIIVVACNTASAYALERLK---KEINVPVFGVIEPGVKE----ALKKSRNK 107
Query: 175 QFDVL 179
+ V+
Sbjct: 108 KIGVI 112
>pdb|1FP6|A Chain A, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|B Chain B, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1G5P|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|B Chain B, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1G1M|B Chain B, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G1M|A Chain A, All-Ferrous Nitrogenase Iron Protein From Azotobacter
Vinelandii
pdb|1G5P|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|2NIP|A Chain A, Nitrogenase Iron Protein From Azotobacter Vinelandii
pdb|1FP6|C Chain C, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1FP6|D Chain D, The Nitrogenase Fe Protein From Azotobacter Vinelandii
Complexed With Mgadp
pdb|1N2C|E Chain E, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|F Chain F, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|G Chain G, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1N2C|H Chain H, Nitrogenase Complex From Azotobacter Vinelandii Stabilized
By Adp-Tetrafluoroaluminate
pdb|1NIP|A Chain A, Nitrogenase Iron Protein
pdb|1NIP|B Chain B, Nitrogenase Iron Protein
Length = 289
Score = 29.6 bits (65), Expect = 0.72
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 101 GLQGSGKTTTTAKLAHYLKTKNKKVLLCACD 131
G G GK+TTT L L KKV++ CD
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G GKTT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1G21|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G21|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|H Chain H, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|E Chain E, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|F Chain F, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
pdb|1G20|G Chain G, Mgatp-Bound And Nucleotide-Free Structures Of A
Nitrogenase Protein Complex Between Leu127del-Fe Protein
And The Mofe Protein
Length = 289
Score = 29.6 bits (65), Expect = 0.72
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 101 GLQGSGKTTTTAKLAHYLKTKNKKVLLCACD 131
G G GK+TTT L L KKV++ CD
Sbjct: 10 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 40
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G GKTT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G GKTT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G GKTT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 29.6 bits (65), Expect = 0.72
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G GKTT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
pdb|1G3R|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell
Division Atpase Mind
Length = 237
Score = 29.6 bits (65), Expect = 0.72
Identities = 15/37 (40%), Positives = 23/37 (61%)
Query: 96 VVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132
+ +++G G+GKTT TA L+ L + +KVL DL
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41
>pdb|1DE0|A Chain A, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
pdb|1DE0|B Chain B, Modulating The Midpoint Potential Of The [4fe-4s] Cluster
Of The Nitrogenase Fe Protein
Length = 289
Score = 29.6 bits (65), Expect = 0.72
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 101 GLQGSGKTTTTAKLAHYLKTKNKKVLLCACD 131
G G GK+TTT L L KKV++ CD
Sbjct: 9 GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD 39
>pdb|1CP2|A Chain A, Nitrogenase Iron Protein From Clostridium Pasteurianum
pdb|1CP2|B Chain B, Nitrogenase Iron Protein From Clostridium Pasteurianum
Length = 269
Score = 29.3 bits (64), Expect = 0.94
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEE 156
V + G G GK+TTT L L K +++ CD + + L L ++ ++ EE
Sbjct: 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREE 63
Query: 157 NKSVK 161
+ V+
Sbjct: 64 GEDVE 68
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 29.3 bits (64), Expect = 0.94
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 95 TVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACD-----LQRLAAVEQLKV------ 143
T+ + +G G+GKTT TA L L V + D L+ + +E L V
Sbjct: 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVTLQNVL 63
Query: 144 LGEQVGVEVFYEENKSVKEIAS----NALKRAK-EAQFDVL--LVDSAGRLAIDKELMQE 196
GE E Y VK + + L++A E DVL +++S L +D E
Sbjct: 64 AGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQIMESTDILLLDAPAGLE 123
Query: 197 LKEVKEILNPHEVLYVA--DALSGQDGVKSANTFNEEIG--VSGVVLSK 241
V I E+L V + S DG+K+ E +G V GVV+++
Sbjct: 124 RSAVIAIAAAQELLLVVNPEISSITDGLKT-KIVAERLGTKVLGVVVNR 171
>pdb|1BIF| 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Bifunctional
Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 94 PTVVLMAGLQGSGKTTTTAKLAHYL 118
PT+++M GL GKT + KL YL
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYL 63
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 94 PTVVLMAGLQGSGKTTTTAKLAHYL 118
PT+++M GL GKT + KL YL
Sbjct: 39 PTLIVMVGLPARGKTYISKKLTRYL 63
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 28.9 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 94 PTVVLMAGLQGSGKTTTTAKLAHYL 118
PT+++M GL GKT + KL YL
Sbjct: 38 PTLIVMVGLPARGKTYISKKLTRYL 62
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 369 IKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRF---DQASKMAKRLTN 425
++ V +TK+ E S RKR++L L + ++ + IKR + A + K L N
Sbjct: 31 VEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEGAEETIKELKN 90
Query: 426 K 426
+
Sbjct: 91 R 91
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 28.5 bits (62), Expect = 1.6
Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 28/195 (14%)
Query: 98 LMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQRLAAVEQ-LKVLGEQVGVEVFY-- 154
++ GL G ++ TA L H KN + L RL EQ L + G+ G+ + +
Sbjct: 230 VILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVP 289
Query: 155 EENKSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEI----LNPHEVL 210
E++ + +A AK + V+ D+E + +L++VK + + P +
Sbjct: 290 AEDRFLSALAGENDPEAKRKIIGRVFVE-----VFDEEAL-KLEDVKWLAQGTIYPDVIE 343
Query: 211 YVADALSGQDGVKSANTF-----NEEIGVSGVVLSKF-DSDSKGGIALGITYQL------ 258
A A +KS + ++G+ + F D K G+ LG+ Y +
Sbjct: 344 SAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELGLPYDMLYRHPF 403
Query: 259 ---GLPLRFIGSGEK 270
GL +R +G +K
Sbjct: 404 PGPGLGVRVLGEVKK 418
>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With
Mg- Adp From Pyrococcus Horikoshii Ot3
Length = 243
Score = 28.5 bits (62), Expect = 1.6
Identities = 15/37 (40%), Positives = 22/37 (58%)
Query: 96 VVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132
+ +++G G+GKTT TA L+ L +KVL DL
Sbjct: 5 ISIVSGKGGTGKTTVTANLSVALGEXGRKVLAVDGDL 41
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 369 IKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRF---DQASKMAKRLTN 425
++ V +TK+ E S RKR++L L + ++ + IKR + A + K L N
Sbjct: 31 VEEEVKKITKEAMEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEGAEETIKELKN 90
Query: 426 K 426
+
Sbjct: 91 R 91
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 28.5 bits (62), Expect = 1.6
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTK----NKKVLLCACDLQRLAAVEQLKVLGEQVGVEV 152
VL+AG G G+TT +A L+T + VL+ D +AA+ G+ + ++
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQGD---MAAILTSLERGDVLFIDE 110
Query: 153 FYEENKSVKEIASNALKRAKEAQFDVLL 180
+ NK+V+E+ +A+ ++ Q D+++
Sbjct: 111 IHRLNKAVEELLYSAI---EDFQIDIMI 135
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 28.1 bits (61), Expect = 2.1
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 96 VVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDL 132
+V + G G+GKTTT + +A ++ + K++ D+
Sbjct: 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70
>pdb|1TDJ| Threonine Deaminase (Biosynthetic) From E. Coli
Length = 514
Score = 28.1 bits (61), Expect = 2.1
Identities = 14/49 (28%), Positives = 25/49 (50%)
Query: 154 YEENKSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKE 202
+ E +VK I + +E D++ VDS A K+L ++++ V E
Sbjct: 238 FAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAE 286
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 28.1 bits (61), Expect = 2.1
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 282 IVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVK-----KLG 336
I G LMGAG A +V+ ++ +D+ K KKG + L ++ K K K G
Sbjct: 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG---IEESLRKVAKKKFAENPKAG 77
Query: 337 S--MSSLISMIPGLGNMASALKDTDL--ESSLEVKKIKA 371
+ +S I + AS + TDL E+ +E K+K+
Sbjct: 78 DEFVEKTLSSISTSTDAASVVHSTDLVVEAIVENLKVKS 116
>pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
Length = 211
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 369 IKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRF---DQASKMAKRLTN 425
++ V +TK+ E S RKR++L L + ++ + IKR + A + K L N
Sbjct: 31 VEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEGAEETIKELKN 90
Query: 426 K 426
+
Sbjct: 91 R 91
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 3/61 (4%)
Query: 369 IKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSEINRIIKRF---DQASKMAKRLTN 425
++ V +TK+ E S RKR++L L + ++ + IKR + A + K L N
Sbjct: 31 VEEEVKKITKEAXEGKLNFEQSLRKRVSLLKDLPIEKVEKAIKRITPTEGAEETIKELKN 90
Query: 426 K 426
+
Sbjct: 91 R 91
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 27.7 bits (60), Expect = 2.7
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 282 IVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVK-----KLG 336
I G LMGAG A +V+ ++ +D+ K KKG + L ++ K K K G
Sbjct: 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG---IEESLRKVAKKKFAENPKAG 77
Query: 337 S--MSSLISMIPGLGNMASALKDTDL--ESSLEVKKIK 370
+ +S I + AS + TDL E+ +E K+K
Sbjct: 78 DEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVK 115
>pdb|1II0|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II0|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|B Chain B, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1F48|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase
pdb|1II9|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Amp-Pnp
pdb|1IHU|A Chain A, Crystal Structure Of The Escherichia Coli Arsenite-
Translocating Atpase In Complex With Mg-Adp-Alf3
Length = 589
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/43 (34%), Positives = 21/43 (47%)
Query: 89 FAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACD 131
F Q P + G G GKT+ + A L + K+VLL + D
Sbjct: 3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45
>pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 27.7 bits (60), Expect = 2.7
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 150 VEVFYEENKSVK--EIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPH 207
V +E K +K +I+ + RAK LL+ G AI +++ +++ + L+P
Sbjct: 334 VNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPE 393
Query: 208 EVLYVADALSGQDGVKSANTFNEEIGVSGVVL 239
EV D ++ D + AN + VS V L
Sbjct: 394 EVFEQVDKITKDDIIMWANYRLQNKPVSMVAL 425
>pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
Length = 310
Score = 27.7 bits (60), Expect = 2.7
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 282 IVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVK-----KLG 336
I G LMGAG A +V+ ++ +D+ K KKG + L ++ K K K G
Sbjct: 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG---IEESLRKVAKKKFAENPKAG 77
Query: 337 S--MSSLISMIPGLGNMASALKDTDL--ESSLEVKKIK 370
+ +S I + AS + TDL E+ +E K+K
Sbjct: 78 DECVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVK 115
>pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 27.7 bits (60), Expect = 2.7
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 150 VEVFYEENKSVK--EIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPH 207
V +E K +K +I+ + RAK LL+ G AI +++ +++ + L+P
Sbjct: 334 VNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPE 393
Query: 208 EVLYVADALSGQDGVKSANTFNEEIGVSGVVL 239
EV D ++ D + AN + VS V L
Sbjct: 394 EVFEQVDKITKDDIIMWANYRLQNKPVSMVAL 425
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 27.7 bits (60), Expect = 2.7
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 282 IVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVK-----KLG 336
I G LMGAG A +V+ ++ +D+ K KKG + L ++ K K K G
Sbjct: 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG---IEESLRKVAKKKFAENPKAG 77
Query: 337 S--MSSLISMIPGLGNMASALKDTDL--ESSLEVKKIK 370
+ +S I + AS + TDL E+ +E K+K
Sbjct: 78 DEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVK 115
>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma
pdb|1CM8|B Chain B, Phosphorylated Map Kinase P38-Gamma
Length = 367
Score = 27.7 bits (60), Expect = 2.7
Identities = 14/43 (32%), Positives = 22/43 (50%)
Query: 17 RFQDDEKALDRALDELKKTLLKNDVHHKVARELLKKVESQTKL 59
++ D +DR LDE K+ K + K R+L +V +T L
Sbjct: 325 KYDDSFDDVDRTLDEWKRVTYKEVLSFKPPRQLGARVSKETPL 367
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 27.7 bits (60), Expect = 2.7
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 282 IVGRLMGAGDIVSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVK-----KLG 336
I G LMGAG A +V+ ++ +D+ K KKG + L ++ K K K G
Sbjct: 21 IGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG---IEESLRKVAKKKFAENPKAG 77
Query: 337 S--MSSLISMIPGLGNMASALKDTDL--ESSLEVKKIK 370
+ +S I + AS + TDL E+ +E K+K
Sbjct: 78 DEFVEKTLSTIATSTDAASVVHSTDLVVEAIVENLKVK 115
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 27.7 bits (60), Expect = 2.7
Identities = 28/145 (19%), Positives = 60/145 (41%), Gaps = 22/145 (15%)
Query: 97 VLMAGLQGSGKTTTTAKLAHYLKTKNKKVLLCACDLQR--LAAVEQLKVLGEQVGVEVFY 154
V + G GSGK+T + + + ++L+ DL+ LA++ L Q V +F
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQ-NVHLF- 429
Query: 155 EENKSVKEIASNALKRAKEAQFDVLLVDSAGRLAIDKELMQELKEVKEILNPHEVLYVAD 214
+ +N + A+ Q+ ++ A R+A + + ++ D
Sbjct: 430 ------NDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN------------GLD 471
Query: 215 ALSGQDGVKSANTFNEEIGVSGVVL 239
+ G++GV + + I ++ +L
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALL 496
>pdb|1LKV|X Chain X, Crystal Structure Of The Middle And C-Terminal Domains Of
The Flagellar Rotor Protein Flig
Length = 232
Score = 27.3 bits (59), Expect = 3.6
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 293 VSLAEKTASVLNPNEAKDLSKKLKKGQFTFNDFLNQIEKVKKLGSMSSLISMIPGLGNMA 352
++L E+T+ P K++ + L+K K G +S S + G+ A
Sbjct: 59 IALLERTS----PEVVKEIERNLEK---------------KISGFVSRTFSKVGGIDTAA 99
Query: 353 SALKDTDLESSLEVKKIKAMVNSMTKKEQENPEILNGSRRKRIALGSGLEVSE--INRII 410
+ + D + KKI M K QENPE+ + RR+ L++ + I ++
Sbjct: 100 EIMNNLDRTTE---KKI------MDKLVQENPELADEIRRRMFVFEDILKLDDRSIQLVL 150
Query: 411 KRFD 414
+ D
Sbjct: 151 REVD 154
>pdb|1J90|A Chain A, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
pdb|1J90|B Chain B, Crystal Structure Of Drosophila Deoxyribonucleoside Kinase
Length = 230
Score = 27.3 bits (59), Expect = 3.6
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 92 TPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKKVLL 127
T P VL+ G GSGKTT L H+ K KN LL
Sbjct: 18 TQPFTVLIEGNIGSGKTT---YLNHFEKYKNDICLL 50
>pdb|1XVA|A Chain A, Methyltransferase
pdb|1XVA|B Chain B, Methyltransferase
pdb|1BHJ|A Chain A, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1BHJ|B Chain B, Crystal Structure Of Apo-Glycine N-Methyltransferase
(Gnmt)
pdb|1D2C|A Chain A, Methyltransferase
pdb|1D2C|B Chain B, Methyltransferase
Length = 292
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 4/70 (5%)
Query: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIASNALKRAKEAQFDVLLVDS 183
+VL AC V+ + ++ E V +K +K R KE FD +++
Sbjct: 59 RVLDVACG----TGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 114
Query: 184 AGRLAIDKEL 193
A L +DK++
Sbjct: 115 ANWLTLDKDV 124
>pdb|1NSA| Three-Dimensional Structure Of Porcine Procarboxypeptidase B: A
Structural Basis Of Its Inactivity
Length = 395
Score = 26.9 bits (58), Expect = 4.7
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 148 VGVEVFYEENKSVKEIASNALKRAKEAQFD 177
+ VE F E+N+ E+ N L+ EAQFD
Sbjct: 56 LAVEDFLEQNELQYEVLINNLRSVLEAQFD 85
>pdb|1D2G|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2G|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase From Rat Liver
pdb|1D2H|A Chain A, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|B Chain B, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|C Chain C, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
pdb|1D2H|D Chain D, Crystal Structure Of R175k Mutant Glycine N-
Methyltransferase Complexed With S-Adenosylhomocysteine
Length = 292
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/70 (25%), Positives = 31/70 (43%), Gaps = 4/70 (5%)
Query: 124 KVLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIASNALKRAKEAQFDVLLVDS 183
+VL AC V+ + ++ E V +K +K R KE FD +++
Sbjct: 59 RVLDVACG----TGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE 114
Query: 184 AGRLAIDKEL 193
A L +DK++
Sbjct: 115 ANWLTLDKDV 124
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 26.2 bits (56), Expect = 8.0
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 12/52 (23%)
Query: 134 RLAAVEQLKVLGEQVGVEVFYEENKS------------VKEIASNALKRAKE 173
RLA +E + +L Q+GVE F E+ S ++E A++ LK+ E
Sbjct: 419 RLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVE 470
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
Length = 454
Score = 26.2 bits (56), Expect = 8.0
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 6/41 (14%)
Query: 305 PNEAKDLSKKLKKGQF------TFNDFLNQIEKVKKLGSMS 339
P E+ L KKL GQF T+N K K GSMS
Sbjct: 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS 226
>pdb|1EKS|A Chain A, Asp128ala Variant Of Moac Protein From E. Coli
Length = 161
Score = 26.2 bits (56), Expect = 8.0
Identities = 30/126 (23%), Positives = 50/126 (38%), Gaps = 9/126 (7%)
Query: 65 QQFLDALEKSLLEILSAKGSSGFTFAQTPPTVVLMAGLQGSGKTTTTAKLAHYLKTKNKK 124
+ F+ ++L I+ + G FA +AG+Q + +T L H L +
Sbjct: 31 EAFVTMRSETLAMIIDGRHHKGDVFA-----TARIAGIQAAKRTWDLIPLCHPLMLSKVE 85
Query: 125 VLLCACDLQRLAAVEQLKVLGEQVGVEVFYEENKSVKEIASNALKRAKEAQFDV----LL 180
V L A +E L L + GVE+ SV + A+ +A + + LL
Sbjct: 86 VNLQAEPEHNRVRIETLCRLTGKTGVEMEALTAASVAALTIYAMCKAVQKDMVIGPVRLL 145
Query: 181 VDSAGR 186
S G+
Sbjct: 146 AKSGGK 151
>pdb|1J6U|A Chain A, Crystal Structure Of Udp-N-Acetylmuramate--Alanine Ligase
(Tm0231) From Thermotoga Maritima At 2.3 A Resolution
Length = 469
Score = 26.2 bits (56), Expect = 8.0
Identities = 12/18 (66%), Positives = 13/18 (71%)
Query: 106 GKTTTTAKLAHYLKTKNK 123
GKTTTTA +AH LK K
Sbjct: 124 GKTTTTAXVAHVLKHLRK 141
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 26.2 bits (56), Expect = 8.0
Identities = 17/41 (41%), Positives = 19/41 (45%), Gaps = 6/41 (14%)
Query: 305 PNEAKDLSKKLKKGQF------TFNDFLNQIEKVKKLGSMS 339
P E+ L KKL GQF T+N K K GSMS
Sbjct: 180 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMS 220
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.132 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,255,884
Number of Sequences: 13198
Number of extensions: 89426
Number of successful extensions: 382
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 60
length of query: 448
length of database: 2,899,336
effective HSP length: 91
effective length of query: 357
effective length of database: 1,698,318
effective search space: 606299526
effective search space used: 606299526
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)