BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645767|ref|NP_207944.1| valyl-tRNA synthetase
(valS) [Helicobacter pylori 26695]
(874 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 637 0.0
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna ... 228 3e-60
pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed Wit... 221 2e-58
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus The... 96 1e-20
pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermoph... 51 5e-07
pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methion... 40 0.001
pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escheric... 40 0.001
pdb|1DUW|A Chain A, Structure Of Nonaheme Cytochrome C 33 0.18
pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Syn... 32 0.30
pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase 32 0.40
pdb|1K3E|B Chain B, Type Iii Secretion Chaperone Cest >gi|1... 31 0.68
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 29 2.0
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 28 3.4
pdb|1KOH|C Chain C, The Crystal Structure And Mutational An... 28 5.7
pdb|1KOO|C Chain C, The Crystal Structure And Mutational An... 28 5.7
pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N... 27 9.8
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 637 bits (1644), Expect = 0.0
Identities = 364/882 (41%), Positives = 517/882 (58%), Gaps = 47/882 (5%)
Query: 7 PTTYQPEEIEKKIYEICSHRGYFEIDGNEAIQEKNKRFCLMMPPPNVTGVLHIGHALTLS 66
P Y P+ +E K E + + + F + MPPPNVTG LH+GHAL S
Sbjct: 4 PKAYDPKSVEPKWAEKWAKNPFVANP-----KSGKPPFVIFMPPPNVTGSLHMGHALDNS 58
Query: 67 LQDILARYKRMDGYKTLYQPGLDHAGIATQNVVEKQLLSQGIKKEDLGREEFIKKVWEWK 126
LQD L RYKRM G++ ++ PG DHAGIATQ VVE+ LL +G + DLGRE+F+++VW+WK
Sbjct: 59 LQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERVWQWK 118
Query: 127 EKSGGAILEQMKRLGVSAAFSRTRFTMDKGLQRAVKLAFLKWYEKGLIIQDNYMVNWCTK 186
E+SGG IL+Q+KRLG SA +SR FTMD+ RAV+ AF ++Y +GL + +VNWC +
Sbjct: 119 EESGGTILKQLKRLGASADWSREAFTMDEKRSRAVRYAFSRYYHEGLAYRAPRLVNWCPR 178
Query: 187 -DGALSDIEVEYEERKGALYYIRYYLENQKDYLVVATTRPETLFGDSALMVNPNDERYKH 245
+ LSD+EVE E G LY +RY +E ++ +AT RPET+F D A+ V+P DERY+H
Sbjct: 179 CETTLSDLEVETEPTPGKLYTLRYEVEG-GGFIEIATVRPETVFADQAIAVHPEDERYRH 237
Query: 246 LVGQKAILPLIHRTIPIIADEHVEMEFGTGCVKVTPGHDFNDYEVGKRHHLETIKIFDEK 305
L+G++A +PL IPI+AD VE +FGTG +KVTP HD DYE+G+RH L+ + + + +
Sbjct: 238 LLGKRARIPLTEVWIPILADPAVEKDFGTGALKVTPAHDPLDYEIGERHGLKPVSVINLE 297
Query: 306 GILNAH--CGEFENLERLEARDKVVERLKENALLEKIEEHTHQVGHCYRCHNVVEPYVSK 363
G + L+R EAR K VE +E L K E++T + C RC +E +
Sbjct: 298 GRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRCGTPIEYAIFP 357
Query: 364 QWFVKPE-IAQSSIEKIQQGLARFYPSNWINNYNAWMRELRPWCISRQLFWGHQIPVFTC 422
QW+++ +A+ ++ +++G F P W W+ ++ W ISRQL+WGHQIP + C
Sbjct: 358 QWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYC 417
Query: 423 ENNHQFVS-------LDTPLSCPTCKSETLEQDKDVLDTWFSSGLWAFSTLGWGQEKSGL 475
E + Q V+ L+ P SC C S L++D+DV DTWFSS LW STLGW +E
Sbjct: 418 E-DCQAVNVPRPERYLEDPTSCEACGSPRLKRDEDVFDTWFSSALWPLSTLGWPEE---- 472
Query: 476 FNESDLKDFYPNTTLITGFDILFFWVARMLFCSESLLGELPFKDIYLHALVRDEKGEKMS 535
DLK FYP L+TG+DILF WV+RM +GE PFK + LH LV DEKG+KMS
Sbjct: 473 --TEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQKMS 530
Query: 536 KSKGNVIDPLEMIEKYGADSLRFTLANLCATGRDIKLSTTHLENNKNFANKLFNAASYLK 595
KSKGNVIDPLEM+E+YGAD+LRF L L G+DI+L LE +NFANKL+NAA ++
Sbjct: 531 KSKGNVIDPLEMVERYGADALRFALIYLATGGQDIRLDLRWLEMARNFANKLYNAARFVL 590
Query: 596 LKQESFKDKERLNEYQTPLGRYAKSRLNSATKEARNALDNYRFNDATTLLYRFLWGEFCD 655
L +E F+ KE + T R+ +SRL+ +E + A +Y +W EFCD
Sbjct: 591 LSREGFQAKE---DTPTLADRFMRSRLSRGVEEITALYEALDLAQAAREVYELVWSEFCD 647
Query: 656 WFIEFSKVENEA-----IDELGSVLKEALKLLHPFMPFISESLYHKLSNTELENTESIMV 710
W++E +K +A + L VL LKLLHP MPF++ LY L+ E + +
Sbjct: 648 WYLEAAKPALKAGNAHTLRTLEEVLAVLLKLLHPMMPFLTSELYQALT-----GKEELAL 702
Query: 711 MPYPKDLAQDEKLEHEFEVIKDCIVSLRRLKIMLETPPIVLKEASVGLR-EAIENTERLQ 769
+P+ +DE+ E FE +K + ++R LK PP +E V L E E L+
Sbjct: 703 EAWPEPGGRDEEAERAFEALKQAVTAVRALKAEAGLPP--AQEVRVYLEGETAPVEENLE 760
Query: 770 TYAQKLARLEKVSVISSKPLKSVSDVGEFCQTYANLEN-LDLSPLVARLKKQLEKL--EK 826
+ L + ++ +P K++ LE LD+ R +K+L++L
Sbjct: 761 VF----RFLSRADLLPERPAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALA 816
Query: 827 EKLKLNLHNENFVKNAPKSVLEKAKESLKTLLEKESKIKQEL 868
E+ + L + F + APK V+E + LK LE+ +I++ L
Sbjct: 817 ERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 858
>pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 228 bits (580), Expect = 3e-60
Identities = 196/775 (25%), Positives = 330/775 (42%), Gaps = 119/775 (15%)
Query: 41 NKRFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYKTLYQPGLDHAGIATQNVVE 100
N+ F L PP G LH+GHAL L+D + RYK M G+ Y PG D G+ +E
Sbjct: 47 NETFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLP----IE 102
Query: 101 KQLLSQGIKKEDLGREEFIKKVWEWKEKSGGAILEQMKRLGVSAAFSRTRFTMDKGLQRA 160
+ L +G+ ++ + EF +K E+ + + +RLGV F+ T+ + A
Sbjct: 103 QALTKKGVDRKKMSTAEFREKCKEFALEQIELQKKDFRRLGVRGDFNDPYITLKPEYEAA 162
Query: 161 VKLAFLKWYEKGLIIQDNYMVNWC-TKDGALSDIEVEYEERKGALYYIRYYLENQKDYL- 218
F + +KGLI + V W + + +L++ E+EY +++ A Y+ + +++ K +
Sbjct: 163 QIRIFGEMADKGLIYKGKKPVYWSPSSESSLAEAEIEYHDKRSASIYVAFNVKDDKGVVD 222
Query: 219 -----VVATTRPETLFGDSALMVNP---------NDERY--------------------- 243
++ TT P T+ + A+ V+P N E+Y
Sbjct: 223 ADAKFIIWTTTPWTIPSNVAITVHPELKYGQYNVNGEKYIIAEALSDAVAEALDWDKASI 282
Query: 244 --------KHLVGQKAILPLIHRTIPIIADEHVEMEFGTGCVKVTPGHDFNDYEVGKRHH 295
K L A P + R +I +HV + GTGCV PGH +DY VG+++
Sbjct: 283 KLEKEYTGKELEWVVAQHPFLDRESLVINGDHVTTDAGTGCVHTAPGHGEDDYIVGQQYE 342
Query: 296 LETIKIFDEKGILNAHCGEFENLERLEARDKVVERLKENALLEKIEEHTHQVGHCYRCHN 355
L I D+KG+ G+FE + +A V + L E L K++ TH H +R
Sbjct: 343 LPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKK 402
Query: 356 VVEPYVSKQWFVKPEIAQSSIEKIQQGLARF-----YPSNWINN--YNAWMRELRPWCIS 408
V + QWF +SI K++Q + + NW YN +R+ W IS
Sbjct: 403 PVIFRATPQWF-------ASISKVRQDILDAIENTNFKVNWGKTRIYNM-VRDRGEWVIS 454
Query: 409 RQLFWGHQIPVFTCENNHQFVSLDTP---------------------------LSCPTCK 441
RQ WG +PVF EN ++ +T + P
Sbjct: 455 RQRVWGVPLPVFYAENGEIIMTKETVNHVADLFAEHGSNIWFEREAKDLLPEGFTHPGSP 514
Query: 442 SETLEQDKDVLDTWFSSGLWAFSTLGWGQEKSGLFNESDLKDFYPNTTLITGFDILFFWV 501
+ T ++ D++D WF SG L E S +P + G D W
Sbjct: 515 NGTFTKETDIMDVWFDSGSSHRGVLETRPELS-----------FPADMYLEGSDQYRGWF 563
Query: 502 ARMLFCSESLLGELPFKDIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLRFTLA 561
+ S + G P+K + H V D +G+KMSKS GNVI P +++++ GAD R ++
Sbjct: 564 NSSITTSVATRGVSPYKFLLSHGFVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVS 623
Query: 562 NLCATGRDIKLSTTHLENNKNFANKLFNAASYLKLKQESFK-DKERLNEYQ-TPLGRYAK 619
+ D+++S L+ + K+ N ++ F D + + E + + RY
Sbjct: 624 STDYLA-DVRISDEILKQTSDDYRKIRNTLRFMLGNINDFNPDTDSIPESELLEVDRYLL 682
Query: 620 SRLNSATKEARNALDNYRFNDATTLLYRFLWGEFCDWFIEFSK-----------VENEAI 668
+RL T N +N+ + + + F+ E ++++++ K +
Sbjct: 683 NRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQ 742
Query: 669 DELGSVLKEALKLLHPFMPFISESLYHKLSNTELENTESIMVMPYPKDLAQDEKL 723
L +L + KLL P + +E ++ S+T ES+ + PK + D+ L
Sbjct: 743 TVLYQILVDMTKLLAPILVHTAEEVW---SHTPHVKEESVHLADMPKVVEVDQAL 794
>pdb|1JZS|A Chain A, Isoleucyl-Trna Synthetase Complexed With Mupirocin
pdb|1ILE| Isoleucyl-Trna Synthetase
pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
Length = 821
Score = 221 bits (564), Expect = 2e-58
Identities = 195/763 (25%), Positives = 327/763 (42%), Gaps = 103/763 (13%)
Query: 43 RFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYKTLYQPGLDHAGIATQNVVEKQ 102
R+ + PP G+ H+GHA S +D+ RYK M GY + G D G+ + VEK+
Sbjct: 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGLPVELEVEKK 98
Query: 103 L-LSQGIKKEDLGREEFIKKVWE---WKEKSGGAILEQMKRLGVSAAFSRTRFTMDKGLQ 158
L L + E G E F + E EK A E R+ T++
Sbjct: 99 LGLKSKREIEAYGIERFNQACRESVFTYEKEWEAFTE---RIAYWVDLEDAYATLEPTYI 155
Query: 159 RAVKLAFLKWYEKGLIIQDNYMVNWCTKDGA-LSDIEVE--YEERKGALYYIRYYLEN-- 213
++ + +++GL+ +D+ +V +C + G LS EV Y+E + Y+R+ L+
Sbjct: 156 ESIWWSLKNLFDRGLLYRDHKVVPYCPRCGTPLSSHEVALGYKEIQDPSVYVRFPLKEPK 215
Query: 214 ----QKDYLVVATTRPETLFGDSALMVNPNDERYKHLVGQKAIL-------------PLI 256
+K L++ TT P TL G+ A V+P VG +A++ +
Sbjct: 216 KLGLEKASLLIWTTTPWTLPGNVAAAVHPEYTYAAFQVGDEALILEEGLGRKLLGEGTQV 275
Query: 257 HRTIP----------------------IIADEHVEMEFGTGCVKVTPGHDFNDYEVGKRH 294
+T P ++ ++V E GTG V P D E + +
Sbjct: 276 LKTFPGKALEGLPYTPPYPQALEKGYFVVLADYVSQEDGTGIVHQAPAFGAEDLETARVY 335
Query: 295 HLETIKIFDEKGILNAHCGEFENLERLEARDKVVERLKENALLEKIEEHTHQVGHCYRCH 354
L +K DE+G L F+ L EA ++ L+ LL K E + H HC+RC
Sbjct: 336 GLPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCS 393
Query: 355 NVVEPYVSKQWFVKPEIAQSSIEKIQQGLARFYPSNWINNYNAWMRELRPWCISRQLFWG 414
+ Y ++ WF+K + + + + Q + P Y W++ L W +SR +WG
Sbjct: 394 TPLMYYATESWFIKNTLFKDELIRNNQEIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWG 453
Query: 415 HQIPVFTCE--------------------------NNHQFVSLDTPLSCPTCKSETLEQD 448
+P++ C+ + H+ L+C T+ +
Sbjct: 454 TPLPIWVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACAC--GGTMRRV 511
Query: 449 KDVLDTWFSSGLWAFSTLGWGQEKSGLFNESDLKDFYPNTTLITGFDILFFWVARMLFCS 508
V+D W+ SG F++L + E +F ES DF + G D W +
Sbjct: 512 PYVIDVWYDSGAMPFASLHYPFEHEEVFRESFPADF-----IAEGIDQTRGWFNSLHQLG 566
Query: 509 ESLLGELPFKDIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLRFTLANLCATGR 568
L G + FK++ H L+ DEKG+KMSKSKGNV+DP ++I K+GAD+LR+ +
Sbjct: 567 VMLFGSIAFKNVICHGLILDEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPEA 626
Query: 569 DIKLSTTHL-ENNKNFANKLFNAAS----YLKLKQESFKDKERLNEYQTPLGRYAKSRLN 623
D + + E +++ L+N S Y L + K+ E + + R+ +R+
Sbjct: 627 DRRFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPP-PEKRPEMDRWLLARMQ 685
Query: 624 SATKEARNALDNYRFNDATTLLYRFLWGEFCDWFIEFSK----VENEAIDELG--SVLKE 677
+ AL+ Y + L F+ + W++ ++ +A+D + L E
Sbjct: 686 DLIQRVTEALEAYDPTTSARALRDFVVEDLSQWYVRRNRRRFWKNEDALDREAAYATLYE 745
Query: 678 ALKLL----HPFMPFISESLYHKL-SNTELENTESIMVMPYPK 715
AL L+ PF PF++E L+ L + LE ES+ + +P+
Sbjct: 746 ALVLVATLAAPFTPFLAEVLWQNLVRSVRLEAKESVHLADWPE 788
>pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
Length = 878
Score = 96.3 bits (238), Expect = 1e-20
Identities = 98/427 (22%), Positives = 163/427 (37%), Gaps = 120/427 (28%)
Query: 10 YQPEEIEKKIYEICSHRGYFEIDGNEAIQEKNKRFCLMMPPPNVTGVLHIGHALTLSLQD 69
Y P IE K +G+ + + + K++ L+M P +G LH+GH ++ D
Sbjct: 4 YNPHAIEAKWQRFWEEKGFMK--AKDLPGGRGKQYVLVMFP-YPSGDLHMGHLKNYTMGD 60
Query: 70 ILARYKRMDGYKTLYQPGLDHAGIATQNVVEKQLLSQGIKKEDLGREEFIKKVWEWKEKS 129
+LAR++RM GY+ L+ G D G+ +N L G+ +D W +
Sbjct: 61 VLARFRRMQGYEVLHPMGWDAFGLPAENAA----LKFGVHPKD------------WTYAN 104
Query: 130 GGAILEQMKRLGVSAAFSRTRFTMDKGLQRAVKLAFLKWYEKGLIIQDNYMVNWCTK--- 186
E ++ +G+ + R T + R + FLK +EKGL + +VNWC K
Sbjct: 105 IRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQT 164
Query: 187 ------------------------------------DGALSDIE-VEYEERKGALY---- 205
+ L D+E + + E+ A+
Sbjct: 165 VLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWI 224
Query: 206 ------YIRYYLENQKDYLVVATTRPETLFGDSALMVNPND------------------- 240
I + +E ++ + V TTRP+TLFG + L++ P
Sbjct: 225 GRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYV 284
Query: 241 ----------------ERYKHLVGQKAILPLIHRTIPIIADEHVEMEFGTGCVKVTPGHD 284
E+ +G A+ P IPI ++V +GTG + P HD
Sbjct: 285 EAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHD 344
Query: 285 FNDYEVGKRHHLETIKI---------------FDEKGILNAHCGEFENLERLEARDKVVE 329
DYE ++ L K+ ++E GI+ + G F+ E E + KV+
Sbjct: 345 QRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIM-VNSGPFDGTESEEGKRKVIA 403
Query: 330 RLKENAL 336
L+E L
Sbjct: 404 WLEEKGL 410
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/188 (23%), Positives = 78/188 (40%), Gaps = 27/188 (14%)
Query: 516 PFKDIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLRFTLANLCATGRDIKLSTT 575
P +D LH K MSKSKGN + +++ GAD R T+ ++ +
Sbjct: 624 PHEDGTLHLW----KPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEE 679
Query: 576 HLENNKNFANKLFNAASYLKLKQESFKDKERLNE----YQTPL----GRYAKSRLNSATK 627
++ F N+++ + +D+E L E +Q R +L+ K
Sbjct: 680 GVQGAWRFLNRIYRRVA---------EDREALLETSGVFQAEALEGKDRELYGKLHETLK 730
Query: 628 EARNALDNYRFNDATTLLYRFLWGEFCDWFIEFSKVENEAIDELGSVLKEALKLLHPFMP 687
+ L+ RFN A L EF + E+ K + + ++ L++L PF P
Sbjct: 731 KVTEDLEALRFNTAIAALM-----EFLNALYEYRK-DRPVTPVYRTAIRYYLQMLFPFAP 784
Query: 688 FISESLYH 695
++E L+H
Sbjct: 785 HLAEELWH 792
Score = 33.1 bits (74), Expect = 0.14
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 402 LRPWCISRQLFWGHQIPVFTCE 423
LR W ISRQ +WG IP+ CE
Sbjct: 419 LRDWLISRQRYWGTPIPMVHCE 440
>pdb|1A8H| Methionyl-Trna Synthetase From Thermus Thermophilus
Length = 500
Score = 51.2 bits (121), Expect = 5e-07
Identities = 36/130 (27%), Positives = 60/130 (45%), Gaps = 16/130 (12%)
Query: 448 DKDVLDTWFSSGLWAFSTLGWGQEKSGLFNESDLKDFYPNTTLITGFDIL----FFWVAR 503
+ V WF + L S L + + ++ + F+P+ + G DIL FW
Sbjct: 220 ENHVTYVWFDALLNYVSALDYPEGEA-------YRTFWPHAWHLIGKDILKPHAVFWPTM 272
Query: 504 MLFCSESLLGELPFKDIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLRFTLANL 563
+ G ++ + + + G KMSK+ GNV+DP ++EKYG D+LR+ L
Sbjct: 273 L-----KAAGIPMYRHLNVGGFLLGPDGRKMSKTLGNVVDPFALLEKYGRDALRYYLLRE 327
Query: 564 CATGRDIKLS 573
G+D +S
Sbjct: 328 IPYGQDTPVS 337
Score = 43.9 bits (102), Expect = 8e-05
Identities = 41/143 (28%), Positives = 61/143 (41%), Gaps = 18/143 (12%)
Query: 42 KRFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYKTLYQPGLDHAGIATQNVVEK 101
K F + P V H+GHA T + D LAR+ R+DGY+T + G D G V +
Sbjct: 3 KVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHG----ETVYR 58
Query: 102 QLLSQGIKKEDLGREEFIKKVWEWKEKSGGAILEQMKRLGVSAAFSRTRFTMDKGLQRAV 161
+ G ED + F+ +V G LG+ A+ T ++ ++ V
Sbjct: 59 AAQAAG---ED--PKAFVDRV-------SGRFKRAWDLLGI--AYDDFIRTTEERHKKVV 104
Query: 162 KLAFLKWYEKGLIIQDNYMVNWC 184
+L K YE G I Y +C
Sbjct: 105 QLVLKKVYEAGDIYYGEYEGLYC 127
>pdb|1F4L|A Chain A, Crystal Structure Of The E.Coli Methionyl-Trna Synthetase
Complexed With Methionine
Length = 551
Score = 39.7 bits (91), Expect = 0.001
Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 35/207 (16%)
Query: 393 NNYNAWMRE-LRPWCISRQL-FWGHQIPVFTCENNHQFVSLDTPLSCPTCKSETLEQDKD 450
N W L+ W ISR ++G +IP + +V LD P+
Sbjct: 217 NKMQEWFESGLQQWDISRDAPYFGFEIP--NAPGKYFYVWLDAPIGY------------- 261
Query: 451 VLDTWFSSGLWAFSTLGWGQEKSGLFNESDLKDFYPNTTLITGFDILFFWVARMLFCSES 510
+ +F L + S F+E KD G DI++F LF
Sbjct: 262 ---------MGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYF---HSLFWPAM 309
Query: 511 LLGELPFK--DIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLR-FTLANLCATG 567
L G K ++++H V G KMSKS+G I + + ADSLR + A L +
Sbjct: 310 LEGSNFRKPSNLFVHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRI 368
Query: 568 RDIKLSTTHLEN--NKNFANKLFNAAS 592
DI L+ N + NK+ N AS
Sbjct: 369 DDIDLNLEDFVQRVNADIVNKVVNLAS 395
Score = 30.4 bits (67), Expect = 0.89
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 42 KRFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYK 81
K+ + P G +H+GH L D+ RY+RM G++
Sbjct: 6 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE 45
>pdb|1QQT|A Chain A, Methionyl-Trna Synthetase From Escherichia Coli
Length = 551
Score = 39.7 bits (91), Expect = 0.001
Identities = 56/207 (27%), Positives = 81/207 (39%), Gaps = 35/207 (16%)
Query: 393 NNYNAWMRE-LRPWCISRQL-FWGHQIPVFTCENNHQFVSLDTPLSCPTCKSETLEQDKD 450
N W L+ W ISR ++G +IP + +V LD P+
Sbjct: 216 NKMQEWFESGLQQWDISRDAPYFGFEIP--NAPGKYFYVWLDAPIGY------------- 260
Query: 451 VLDTWFSSGLWAFSTLGWGQEKSGLFNESDLKDFYPNTTLITGFDILFFWVARMLFCSES 510
+ +F L + S F+E KD G DI++F LF
Sbjct: 261 ---------MGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYF---HSLFWPAM 308
Query: 511 LLGELPFK--DIYLHALVRDEKGEKMSKSKGNVIDPLEMIEKYGADSLR-FTLANLCATG 567
L G K ++++H V G KMSKS+G I + + ADSLR + A L +
Sbjct: 309 LEGSNFRKPSNLFVHGYVT-VNGAKMSKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRI 367
Query: 568 RDIKLSTTHLEN--NKNFANKLFNAAS 592
DI L+ N + NK+ N AS
Sbjct: 368 DDIDLNLEDFVQRVNADIVNKVVNLAS 394
Score = 30.4 bits (67), Expect = 0.89
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 42 KRFCLMMPPPNVTGVLHIGHALTLSLQDILARYKRMDGYK 81
K+ + P G +H+GH L D+ RY+RM G++
Sbjct: 5 KKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGHE 44
>pdb|1DUW|A Chain A, Structure Of Nonaheme Cytochrome C
Length = 292
Score = 32.7 bits (73), Expect = 0.18
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 313 GEFENLERLEARDKVVERLKENALLEKI---EEHTHQVGHCYRCHNVVEPYVSKQWFVKP 369
G F L+R + +R K N + + E+ T + C CH +V P + W
Sbjct: 71 GNFVTLDRAMHATNIAKRAKGNTPVSCVSCHEQQTKERRECAGCHAIVTPKRDQAWCATC 130
Query: 370 EIAQSSI--EKIQQGL 383
SS+ E++QQG+
Sbjct: 131 HNVTSSMTPEQMQQGI 146
>pdb|1LI7|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase
pdb|1LI7|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase With
Cysteine Substrate Bound
pdb|1LI5|B Chain B, Crystal Structure Of Cysteinyl-Trna Synthetase
Length = 461
Score = 32.0 bits (71), Expect = 0.30
Identities = 15/32 (46%), Positives = 18/32 (55%)
Query: 53 VTGVLHIGHALTLSLQDILARYKRMDGYKTLY 84
V + HIGH T D++ARY R GYK Y
Sbjct: 32 VYDLCHIGHGRTFVAFDVVARYLRFLGYKLKY 63
Score = 27.7 bits (60), Expect = 5.7
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 532 EKMSKSKGNVIDPLEMIEKYGADSLRFTL 560
EKMSKS GN ++++ Y A+++R+ L
Sbjct: 265 EKMSKSLGNFFTVRDVLKYYDAETVRYFL 293
>pdb|1LOX| Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 31.6 bits (70), Expect = 0.40
Identities = 21/66 (31%), Positives = 35/66 (52%), Gaps = 2/66 (3%)
Query: 803 ANLENLDLSPLVARLKKQLEKLEKEKLKLNLHNENFVKNA-PKSVLEKAKESLKTLLEKE 861
A L NL S L + QL + + + L H E + P++VLEK +E L +++KE
Sbjct: 578 ATLPNLKQSSLQMSIVWQLGRDQPIMVPLGQHQEEYFSGPEPRAVLEKFREEL-AIMDKE 636
Query: 862 SKIKQE 867
+++ E
Sbjct: 637 IEVRNE 642
>pdb|1K3E|B Chain B, Type Iii Secretion Chaperone Cest
pdb|1K3E|A Chain A, Type Iii Secretion Chaperone Cest
Length = 156
Score = 30.8 bits (68), Expect = 0.68
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 708 IMVMPYPKDLAQDEKLEHEFEVIKDCIVSLRRLKIMLETPPIVLKEASVGLREAIENTER 767
++ + +P D A EKLE+E EV+ + S+ L ++L I L+ + + E I +++
Sbjct: 94 LLALRFPLDDATPEKLENEIEVV---VKSMENLYLVLHNQGITLENEHMKIEE-ISSSDN 149
Query: 768 LQTYA 772
YA
Sbjct: 150 KHYYA 154
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 29.3 bits (64), Expect = 2.0
Identities = 47/214 (21%), Positives = 89/214 (40%), Gaps = 25/214 (11%)
Query: 676 KEALKLLHPFMPFISESLYHKLSNTELENTESIMVMPYPKDLAQDEKLEHEFEVI----- 730
KE +L P ++E KL L+ E + K + E+L ++ V+
Sbjct: 8 KEVTQLPEPQTASLAELQQXKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPV 67
Query: 731 --KDCIVSLRRLKIMLETPPIVL-KEASVGLREAIENTERLQTYA-QKLARLEKVSVISS 786
+ + LK LE I L +E G+R E QT +LAR ++++ + +
Sbjct: 68 YPRGLDSQVVELKERLEXELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKA 127
Query: 787 KPLKSVSDVGEFCQTYANLENLDLSPLVARLKKQLEKLEKEKLKLNLHNENFVK------ 840
S S++ + + LE L + + +K +E+LK ++N + +
Sbjct: 128 LKESSESNIKDIKK---KLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQEVVQTIK 184
Query: 841 -------NAPKSVLEKAKESLKTLLEKESKIKQE 867
+ + EK E+L+ + EKE +++QE
Sbjct: 185 LLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQE 218
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 28.5 bits (62), Expect = 3.4
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 25/177 (14%)
Query: 715 KDLAQDEKLEHEFEVIKDCIVSLRRLKIMLETPPIVLKEASVGLREAIENTERLQTYAQK 774
K+L Q EKL+ E E+ + RL + +L E + E E +++LQ +K
Sbjct: 894 KNLLQ-EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Query: 775 LA------------------RLEKVSVISSKPLKSVSDVGEFCQTYANLENLDLSPLVAR 816
+ +L+ V + +K + D + N + L R
Sbjct: 953 MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
Query: 817 LKKQLEKLEKEKLKLNLHNENFVKNAPKSVLEKAKESLKTLLEKESKIKQELDLLEQ 873
+ L +E+ K N +KN +S++ + L+ L+KE K +QEL+ +++
Sbjct: 1013 VSDLTTNLAEEEEKAK--NLTKLKNKHESMISE----LEVRLKKEEKSRQELEKIKR 1063
>pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 27.7 bits (60), Expect = 5.7
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 740 LKIMLETPPIVLKEASVGLREAIENTERLQTYAQKLARLEKVSVISSKPLKSVSDVGEFC 799
LK + P +V + V L L+ + + L ++ +S+ L + D+
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN-LSNNRLYRLDDMSSIV 192
Query: 800 QTYANLENLDLSPLVARLKKQLEKLEKEKLK 830
Q NL+ L+LS + +++L+K++ KL+
Sbjct: 193 QKAPNLKILNLSGNELKSERELDKIKGLKLE 223
>pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 27.7 bits (60), Expect = 5.7
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 740 LKIMLETPPIVLKEASVGLREAIENTERLQTYAQKLARLEKVSVISSKPLKSVSDVGEFC 799
LK + P +V + V L L+ + + L ++ +S+ L + D+
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLN-LSNNRLYRLDDMSSIV 192
Query: 800 QTYANLENLDLSPLVARLKKQLEKLEKEKLK 830
Q NL+ L+LS + +++L+K++ KL+
Sbjct: 193 QKAPNLKILNLSGNELKSERELDKIKGLKLE 223
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 26.9 bits (58), Expect = 9.8
Identities = 10/22 (45%), Positives = 15/22 (67%)
Query: 652 EFCDWFIEFSKVENEAIDELGS 673
E+ DWF+ F+KV N+ + GS
Sbjct: 58 EYVDWFLSFAKVVNKKLKPDGS 79
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,148,006
Number of Sequences: 13198
Number of extensions: 222322
Number of successful extensions: 588
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 546
Number of HSP's gapped (non-prelim): 31
length of query: 874
length of database: 2,899,336
effective HSP length: 96
effective length of query: 778
effective length of database: 1,632,328
effective search space: 1269951184
effective search space used: 1269951184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)