BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645768|ref|NP_207945.1| hypothetical protein
[Helicobacter pylori 26695]
(135 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 26 1.8
pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S >gi... 26 1.8
pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 26 1.8
pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic ... 26 1.8
pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid B... 24 5.2
pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed W... 24 5.2
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 C... 24 5.2
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ov... 24 5.2
pdb|1PRH|A Chain A, Prostaglandin H2 Synthase-1 (Cyclooxyge... 24 5.2
pdb|1A5D|A Chain A, Gammae Crystallin From Rat Lens >gi|321... 24 6.8
pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hyd... 24 6.8
pdb|1LNR|S Chain S, Crystal Structure Of The Large Ribosoma... 23 8.9
>pdb|1CS4|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And
Mg
Length = 394
Score = 25.8 bits (55), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 SMVNFLAPL-VFNSKNGFGAQVALSMMDYPDFGF 120
+M N + P+ + N +N F LS+M+ PDF F
Sbjct: 109 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDF 142
>pdb|1AZT|B Chain B, Gs-Alpha Complexed With Gtp-Gamma-S
pdb|1AZS|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase
pdb|1AZT|A Chain A, Gs-Alpha Complexed With Gtp-Gamma-S
Length = 388
Score = 25.8 bits (55), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 SMVNFLAPL-VFNSKNGFGAQVALSMMDYPDFGF 120
+M N + P+ + N +N F LS+M+ PDF F
Sbjct: 95 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDF 128
>pdb|1CJU|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp And Mg
pdb|1CJT|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mn, And Mg
pdb|1CJK|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With Adenosine
5'-(Alpha Thio)- Triphosphate (Rp), Mg, And Mn
pdb|1CJV|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
Beta-L-2',3'-Dideoxyatp, Mg, And Zn
Length = 402
Score = 25.8 bits (55), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 SMVNFLAPL-VFNSKNGFGAQVALSMMDYPDFGF 120
+M N + P+ + N +N F LS+M+ PDF F
Sbjct: 109 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDF 142
>pdb|1CUL|C Chain C, Complex Of Gs-Alpha With The Catalytic Domains Of
Mammalian Adenylyl Cyclase: Complex With
2',5'-Dideoxy-Adenosine 3'- Triphosphate And Mg
Length = 380
Score = 25.8 bits (55), Expect = 1.8
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 88 SMVNFLAPL-VFNSKNGFGAQVALSMMDYPDFGF 120
+M N + P+ + N +N F LS+M+ PDF F
Sbjct: 95 AMSNLVPPVELANPENQFRVDYILSVMNVPDFDF 128
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
Length = 553
Score = 24.3 bits (51), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P +L +L NP C EY
Sbjct: 484 NSIFGESMIEMGAPFSLKGLLGNPICSPEY 513
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl)hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl)hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5-Methoxy-2-Methylindole-3-Acetic Acid
(Iodoindomethacin), Trans Model
pdb|1PTH| Dioxygenase, Peroxidase Mol_id: 1; Molecule: Prostaglandin H2
Synthase-1; Chain: Null; Synonym: Cyclooxygenase I; Ec:
1.14.99.1
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 24.3 bits (51), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P +L +L NP C EY
Sbjct: 491 NSIFGESMIEMGAPFSLKGLLGNPICSPEY 520
>pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
Length = 580
Score = 24.3 bits (51), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P +L +L NP C EY
Sbjct: 495 NSIFGESMIEMGAPFSLKGLLGNPICSPEY 524
>pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
Length = 551
Score = 24.3 bits (51), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P +L +L NP C EY
Sbjct: 483 NSIFGESMIEMGAPFSLKGLLGNPICSPEY 512
>pdb|1PRH|A Chain A, Prostaglandin H2 Synthase-1 (Cyclooxygenase I)
pdb|1PRH|B Chain B, Prostaglandin H2 Synthase-1 (Cyclooxygenase I)
Length = 554
Score = 24.3 bits (51), Expect = 5.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P +L +L NP C EY
Sbjct: 483 NSIFGESMIEMGAPFSLKGLLGNPICSPEY 512
>pdb|1A5D|A Chain A, Gammae Crystallin From Rat Lens
pdb|1A5D|B Chain B, Gammae Crystallin From Rat Lens
Length = 173
Score = 23.9 bits (50), Expect = 6.8
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 96 LVFNSKNGFGAQVALSMMDYPDF----GFRDPLKS 126
+++ N G Q L DYPD+ GF D ++S
Sbjct: 43 MLYEQPNFTGCQYFLRRGDYPDYQQWMGFSDSVRS 77
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 23.9 bits (50), Expect = 6.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 24 DSLFSRLISQTNSPMALDMVLVNPYCLREY 53
+S+F + + +P L +L NP C EY
Sbjct: 483 NSIFGESMIEMGAPFXLKGLLGNPICSPEY 512
>pdb|1LNR|S Chain S, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 115
Score = 23.5 bits (49), Expect = 8.9
Identities = 13/30 (43%), Positives = 18/30 (59%)
Query: 62 ELLLELDSHSKVEVYCVVVLQKNLEDSMVN 91
++LL L KV V V V+ KN++ SM N
Sbjct: 35 KVLLALPRDQKVVVEGVNVITKNVKPSMTN 64
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.325 0.141 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 715,583
Number of Sequences: 13198
Number of extensions: 25400
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 12
length of query: 135
length of database: 2,899,336
effective HSP length: 79
effective length of query: 56
effective length of database: 1,856,694
effective search space: 103974864
effective search space used: 103974864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)