BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645773|ref|NP_207950.1| cell filamentation protein
(fic) [Helicobacter pylori 26695]
(177 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LDG| Plasmodium Falciparum L-Lactate Dehydrogenase C... 26 2.3
pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Bindi... 26 2.3
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 25 3.9
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 25 3.9
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 25 3.9
pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTA... 25 5.1
pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme ... 25 5.1
pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of ... 25 5.1
pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Ox... 25 5.1
pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Fl... 25 5.1
pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydro... 24 8.6
pdb|1FCE| Processive Endocellulase Celf Of Clostridium Ce... 24 8.6
pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel4... 24 8.6
>pdb|1LDG| Plasmodium Falciparum L-Lactate Dehydrogenase Complexed With Nadh
And Oxamate
pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 99 LEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNT 158
L G+G + L+++K L +VL+D + + A++ S N + K SNT
Sbjct: 9 LVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNC--KVSGSNT 66
Query: 159 NDPL 162
D L
Sbjct: 67 YDDL 70
>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of
Plasmodium Falciparum Lactate Dehydrogenase
Length = 316
Score = 26.2 bits (56), Expect = 2.3
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 99 LEGNGRATRIWLDLLLKKELKKIVLWDRIDKAAYLSAMERSPVNDLEIKTLLKKHLSSNT 158
L G+G + L+++K L +VL+D + + A++ S N + K SNT
Sbjct: 9 LVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNC--KVSGSNT 66
Query: 159 NDPL 162
D L
Sbjct: 67 YDDL 70
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 25.4 bits (54), Expect = 3.9
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 10 KAKHLIQSGLIDTI-EVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNF 59
K+ L Q+ LI + +VG+ +E H LF+G+Y G D K F
Sbjct: 473 KSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTF 523
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 25.4 bits (54), Expect = 3.9
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 10 KAKHLIQSGLIDTI-EVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNF 59
K+ L Q+ LI + +VG+ +E H LF+G+Y G D K F
Sbjct: 589 KSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTF 639
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 25.4 bits (54), Expect = 3.9
Identities = 17/51 (33%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
Query: 10 KAKHLIQSGLIDTI-EVGTIKGLQEIHRFLFEGLYEFAGKIRDKNIAKGNF 59
K+ L Q+ LI + +VG+ +E H LF+G+Y G D K F
Sbjct: 589 KSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTF 639
>pdb|1E0Y|A Chain A, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
pdb|1E0Y|B Chain B, Structure Of The D170sT457E DOUBLE MUTANT OF
Vanillyl-Alcohol Oxidase
Length = 560
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 85 IVEKYVEMNIAHPFLEGNGRATRIWLDL 112
+VE V + H +LE N ++WLD+
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDV 168
>pdb|1AHU|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|1AHU|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With P-Cresol
pdb|2VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|2VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With Isoeugenol
pdb|1AHV|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHV|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 2-Nitro-P-Cresol
pdb|1AHZ|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1AHZ|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase In Complex With 4-(1-Heptenyl)phenol
pdb|1VAO|A Chain A, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
pdb|1VAO|B Chain B, Structure Of The Octameric Flavoenzyme Vanillyl-Alcohol
Oxidase
Length = 560
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 85 IVEKYVEMNIAHPFLEGNGRATRIWLDL 112
+VE V + H +LE N ++WLD+
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDV 168
>pdb|1E8G|A Chain A, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8G|B Chain B, Structure Of The H61t Double Mutant Of Vanillyl-Alcohol
Oxidase In Complex With Fluoro-Cresol
pdb|1E8H|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8H|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form Complexed By
Adp
pdb|1E8F|A Chain A, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
pdb|1E8F|B Chain B, Structure Of The H61t Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase In The Apo Form
Length = 560
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 85 IVEKYVEMNIAHPFLEGNGRATRIWLDL 112
+VE V + H +LE N ++WLD+
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDV 168
>pdb|1DZN|B Chain B, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
pdb|1DZN|A Chain A, Asp170ser Mutant Of Vanillyl-Alcohol Oxidase
Length = 560
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 85 IVEKYVEMNIAHPFLEGNGRATRIWLDL 112
+VE V + H +LE N ++WLD+
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDV 168
>pdb|1QLT|A Chain A, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLT|B Chain B, Structure Of The H422a Mutant Of The Flavoenzyme
Vanillyl-Alcohol Oxidase
pdb|1QLU|A Chain A, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
pdb|1QLU|B Chain B, Structure Of The H422a Mutant Vanillyl-Alcohol Oxidase In
Complex With Isoeugenol
Length = 560
Score = 25.0 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 85 IVEKYVEMNIAHPFLEGNGRATRIWLDL 112
+VE V + H +LE N ++WLD+
Sbjct: 141 VVEPGVTYHDLHNYLEANNLRDKLWLDV 168
>pdb|1HQS|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
pdb|1HQS|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Bacillus Subtilis
Length = 423
Score = 24.3 bits (51), Expect = 8.6
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 10/60 (16%)
Query: 97 PFLEGNGRATRIW------LDLLLKKELK--KIVLWDRI--DKAAYLSAMERSPVNDLEI 146
PF+EG+G IW L+ ++K K K + W + + AY E P L++
Sbjct: 23 PFIEGDGTGPDIWNAASKVLEAAVEKAYKGEKKITWKEVYAGEKAYNKTGEWLPAETLDV 82
>pdb|1FCE| Processive Endocellulase Celf Of Clostridium Cellulolyticum
pdb|1FAE|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiose
pdb|1FBO|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellobiitol
pdb|1F9O|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum With The Thiooligosaccharide Inhibitor
Pips- Ig3
Length = 629
Score = 24.3 bits (51), Expect = 8.6
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 5 RQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLY---EFAGKIRDKNIAKGNFRF 61
RQ+ +K + + D+ + T++ + HRFL + ++ + GK+ + ++ K +F
Sbjct: 518 RQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVIKSGVKF 577
>pdb|1FBW|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellohexaose
pdb|1F9D|A Chain A, Crystal Structure Of The Cellulase Cel48f From C.
Cellulolyticum In Complex With Cellotetraose
Length = 629
Score = 24.3 bits (51), Expect = 8.6
Identities = 13/60 (21%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 5 RQSLEKAKHLIQSGLIDTIEVGTIKGLQEIHRFLFEGLY---EFAGKIRDKNIAKGNFRF 61
RQ+ +K + + D+ + T++ + HRFL + ++ + GK+ + ++ K +F
Sbjct: 518 RQNAQKLLDAMWNNYSDSKGISTVEQRGDYHRFLDQEVFVPAGWTGKMPNGDVIKSGVKF 577
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.140 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,010,841
Number of Sequences: 13198
Number of extensions: 40846
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 13
length of query: 177
length of database: 2,899,336
effective HSP length: 82
effective length of query: 95
effective length of database: 1,817,100
effective search space: 172624500
effective search space used: 172624500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)