BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645774|ref|NP_207951.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(140 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active ... 27 0.87
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp ... 27 0.87
pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp ... 26 1.5
pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-... 24 5.7
pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin 24 7.4
pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (... 24 7.4
pdb|1HGE|A Chain A, Hemagglutinin (Bromelain Digested) Muta... 24 7.4
pdb|1HGH|A Chain A, Hemagglutinin (Bromelain Digested) Comp... 24 7.4
pdb|3HMG|A Chain A, Hemagglutinin (L226(A)Q) (Bromelain Dig... 24 7.4
pdb|2HMG|A Chain A, Hemagglutinin (G146(A)D) (Bromelain Dig... 24 7.4
pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa) >gi|217... 23 9.7
pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearoth... 23 9.7
pdb|1EX5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From... 23 9.7
pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Col... 23 9.7
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 26.9 bits (58), Expect = 0.87
Identities = 22/85 (25%), Positives = 31/85 (35%), Gaps = 16/85 (18%)
Query: 17 LEKIANVLAPTQIIELVLVSDETIREINKDLRGCDYATDVLSFPLEAIPHTPLGSVVINA 76
L N + + EL + DET+ N D D+ +PH N
Sbjct: 205 LTXAGNEVFKVAVTELAHIVDETLAANNNDRSQLDWL----------VPHQA------NL 248
Query: 77 PLAQTNALKLGHSLENEIALLFIHG 101
+ A KLG S +N + L HG
Sbjct: 249 RIISATAKKLGXSXDNVVVTLDRHG 273
>pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HND|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii-Coa
Complex
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
Length = 317
Score = 26.9 bits (58), Expect = 0.87
Identities = 22/85 (25%), Positives = 32/85 (36%), Gaps = 16/85 (18%)
Query: 17 LEKIANVLAPTQIIELVLVSDETIREINKDLRGCDYATDVLSFPLEAIPHTPLGSVVINA 76
L N + + EL + DET+ N D D+ +PH N
Sbjct: 205 LTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWL----------VPHQA------NL 248
Query: 77 PLAQTNALKLGHSLENEIALLFIHG 101
+ A KLG S++N + L HG
Sbjct: 249 RIISATAKKLGMSMDNVVVTLDRHG 273
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 26.2 bits (56), Expect = 1.5
Identities = 22/85 (25%), Positives = 31/85 (35%), Gaps = 16/85 (18%)
Query: 17 LEKIANVLAPTQIIELVLVSDETIREINKDLRGCDYATDVLSFPLEAIPHTPLGSVVINA 76
L N + + EL + DET+ N D D+ +PH N
Sbjct: 205 LTXAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWL----------VPHQA------NL 248
Query: 77 PLAQTNALKLGHSLENEIALLFIHG 101
+ A KLG S +N + L HG
Sbjct: 249 RIISATAKKLGXSXDNVVVTLDRHG 273
>pdb|1BQQ|M Chain M, Crystal Structure Of The Mt1-Mmp--Timp-2 Complex
pdb|1BUV|M Chain M, Crystal Structure Of The Mt1-Mmp-Timp-2 Complex
Length = 174
Score = 24.3 bits (51), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 92 NEIALLFIHGVLHLLGYDHEKD 113
N+I L+ +H + H LG +H D
Sbjct: 118 NDIFLVAVHELGHALGLEHSSD 139
>pdb|2VIU|A Chain A, Influenza Virus Hemagglutinin
Length = 328
Score = 23.9 bits (50), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 45 KDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
+DL G D +T L A+P+ L + + + TNA +L S
Sbjct: 1 QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQS 45
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
I) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
I) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 23.9 bits (50), Expect = 7.4
Identities = 11/40 (27%), Positives = 22/40 (54%)
Query: 10 LESDFLLLEKIANVLAPTQIIELVLVSDETIREINKDLRG 49
L D +E+I ++ PT + + L+ D + +KD++G
Sbjct: 176 LSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVQG 215
>pdb|1HGE|A Chain A, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|C Chain C, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGE|E Chain E, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains Complex With
Alpha-2-O-Methyl-5-N-Acetyl-Alpha-D-Neuraminic Acid
pdb|1HGD|A Chain A, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|C Chain C, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
pdb|1HGD|E Chain E, Hemagglutinin (Bromelain Digested) Mutant With Gly 135
Replaced By Arg (G135r) In Ha1 Chains
Length = 328
Score = 23.9 bits (50), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 45 KDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
+DL G D +T L A+P+ L + + + TNA +L S
Sbjct: 1 QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQS 45
>pdb|1HGH|A Chain A, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|C Chain C, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGH|E Chain E, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2-O-(4'-Benzylamidocarboxybutyl)-5-N-
Acetylneuraminic Acid
pdb|1HGI|A Chain A, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|C Chain C, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGI|E Chain E, Hemagglutinin (Bromelain Digested) Complexed With
4-O-Acetyl-Alpha-2-O-Methyl-5-Acetyl-Neuraminic Acid
pdb|1HGJ|A Chain A, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|C Chain C, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGJ|E Chain E, Hemagglutinin (Bromelain Digested) Complex With
9-Amino-9-Deoxy-Alpha-2-O-Methyl-5-N-Acetyl-Neuraminic
Acid
pdb|1HGG|A Chain A, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|C Chain C, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGG|E Chain E, Hemagglutinin (Bromelain Digested) Complex With
Alpha-2,3-Sialyllactose
pdb|1HGF|A Chain A, Hemagglutinin (Bromelain Digested)
pdb|1HGF|C Chain C, Hemagglutinin (Bromelain Digested)
pdb|1HGF|E Chain E, Hemagglutinin (Bromelain Digested)
pdb|5HMG|A Chain A, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant
With Asp 112 Replaced By Gly In Ha2 Chains) Complex
With Sialic Acid
pdb|5HMG|C Chain C, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant
With Asp 112 Replaced By Gly In Ha2 Chains) Complex
With Sialic Acid
pdb|5HMG|E Chain E, Hemagglutinin (D112(B)G) (Bromelain Digested) (Mutant
With Asp 112 Replaced By Gly In Ha2 Chains) Complex
With Sialic Acid
pdb|1KEN|A Chain A, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|C Chain C, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1KEN|E Chain E, Influenza Virus Hemagglutinin Complexed With An Antibody
That Prevents The Hemagglutinin Low Ph Fusogenic
Transition
pdb|1EO8|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
pdb|1QFU|A Chain A, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 328
Score = 23.9 bits (50), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 45 KDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
+DL G D +T L A+P+ L + + + TNA +L S
Sbjct: 1 QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQS 45
>pdb|3HMG|A Chain A, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|C Chain C, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains)
pdb|3HMG|E Chain E, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains)
pdb|4HMG|A Chain A, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains) Complex
With Sialic Acid
pdb|4HMG|C Chain C, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains) Complex
With Sialic Acid
pdb|4HMG|E Chain E, Hemagglutinin (L226(A)Q) (Bromelain Digested) (Mutant
With Leu 226 Replaced By Gln In Ha1 Chains) Complex
With Sialic Acid
Length = 328
Score = 23.9 bits (50), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 45 KDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
+DL G D +T L A+P+ L + + + TNA +L S
Sbjct: 1 QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQS 45
>pdb|2HMG|A Chain A, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant
With Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|C Chain C, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant
With Gly 146 Replaced By Asp In Ha1 Chains)
pdb|2HMG|E Chain E, Hemagglutinin (G146(A)D) (Bromelain Digested) (Mutant
With Gly 146 Replaced By Asp In Ha1 Chains)
Length = 328
Score = 23.9 bits (50), Expect = 7.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 45 KDLRGCDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
+DL G D +T L A+P+ L + + + TNA +L S
Sbjct: 1 QDLPGNDNSTATLCLGHHAVPNGTLVKTITDDQIEVTNATELVQS 45
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|B Chain B, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|C Chain C, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|D Chain D, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|E Chain E, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|F Chain F, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|G Chain G, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|H Chain H, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|I Chain I, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|J Chain J, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|K Chain K, E. Coli Aminopeptidase A (Pepa)
pdb|1GYT|L Chain L, E. Coli Aminopeptidase A (Pepa)
Length = 503
Score = 23.5 bits (49), Expect = 9.7
Identities = 20/68 (29%), Positives = 28/68 (40%), Gaps = 12/68 (17%)
Query: 32 LVLVSDETIREINKDLRG----CDYATDVLSFPLEAIPHTPLGSVVINAPLAQTNALKLG 87
L +S +T+ +N D G CD T V F EA V+ A L + LG
Sbjct: 338 LTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEA--------VIDVATLTGACVIALG 389
Query: 88 HSLENEIA 95
H + +A
Sbjct: 390 HHITGLMA 397
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 23.5 bits (49), Expect = 9.7
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 9/40 (22%)
Query: 82 NALKLGHSLENEIALLFIHGVL---------HLLGYDHEK 112
+A GH+ E+E+ + IHG+L LLG+D ++
Sbjct: 268 HATLAGHTFEHELRVARIHGMLGSVDANQGDMLLGWDTDE 307
>pdb|1EX5|A Chain A, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|B Chain B, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|C Chain C, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
pdb|1EX5|D Chain D, Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
Length = 363
Score = 23.5 bits (49), Expect = 9.7
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 12/95 (12%)
Query: 1 MLEIDNQTPLESDFLLLEKIANVLAPTQII-----ELVLVSDETIREINKDLRGCDYATD 55
+L+I TP L + + ANVLA I + +V+ E + + + DL+ C Y T+
Sbjct: 150 VLKIGEHTP---SALAIMENANVLARYASICQQNGIVPIVAPEILPDGDHDLKRCQYVTE 206
Query: 56 -VLSFPLEAIPHTPLGSVVINAPLAQTNALKLGHS 89
VL+ +A+ + + L + N + GH+
Sbjct: 207 KVLAAVYKALSD---HHIYLEGTLLKPNMVTPGHA 238
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 23.5 bits (49), Expect = 9.7
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 4/37 (10%)
Query: 87 GHSLENEIALLFIHGVLHLLGYDHEKDKGEQRQKESE 123
GH L+ L HG++HL+ G +Q++SE
Sbjct: 376 GHKLDG----LAEHGIIHLINSGSAALDGSCKQRDSE 408
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.138 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 728,380
Number of Sequences: 13198
Number of extensions: 26149
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 14
length of query: 140
length of database: 2,899,336
effective HSP length: 79
effective length of query: 61
effective length of database: 1,856,694
effective search space: 113258334
effective search space used: 113258334
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)