BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645775|ref|NP_207952.1| flavodoxin (fldA)
[Helicobacter pylori 26695]
(164 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FUE|A Chain A, Flavodoxin From Helicobacter Pylori 313 5e-87
pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena >gi|77... 143 9e-36
pdb|1AG9|A Chain A, Flavodoxins That Are Required For Enzym... 142 1e-35
pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide... 140 6e-35
pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A Tyrosi... 140 6e-35
pdb|1CZO|A Chain A, Comparisons Of Wild Type And Mutant Fla... 133 9e-33
pdb|1CZN|A Chain A, Refined Structures Of Oxidized Flavodox... 131 4e-32
pdb|1CZK|A Chain A, Comparisons Of Wild Type And Mutant Fla... 130 8e-32
pdb|1CZR|A Chain A, Comparisons Of Wild Type And Mutant Fla... 129 2e-31
pdb|2FCR| Flavodoxin 86 3e-18
pdb|1JA1|A Chain A, Cypor-Triple Mutant >gi|15826749|pdb|1J... 32 0.028
pdb|1J9Z|A Chain A, Cypor-W677g >gi|15826745|pdb|1J9Z|B Cha... 32 0.028
pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Do... 32 0.028
pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cy... 32 0.028
pdb|1JA0|A Chain A, Cypor-W677x >gi|15826747|pdb|1JA0|B Cha... 32 0.028
pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand B... 26 2.6
pdb|1BIX| The Crystal Structure Of The Human Dna Repair E... 26 2.6
pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophi... 26 2.6
pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE... 26 2.6
pdb|1M5D|A Chain A, X-Ray Structure Of The Glur2 Ligand Bin... 26 2.6
pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Bin... 26 2.6
pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitiz... 26 2.6
pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Acti... 26 2.6
pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound T... 26 2.6
pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agal... 25 4.5
pdb|1CNV| Crystal Structure Of Concanavalin B At 1.65 A R... 25 4.5
pdb|1J8M|F Chain F, Signal Recognition Particle Conserved G... 25 5.8
pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved G... 25 5.8
pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1... 24 7.6
pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Bindi... 24 9.9
pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile... 24 9.9
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Int... 24 9.9
pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed W... 24 9.9
pdb|1AY0|A Chain A, Identification Of Catalytically Importa... 24 9.9
pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand B... 24 9.9
pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-... 24 9.9
pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophil... 24 9.9
pdb|1BMT|A Chain A, Methionine Synthase (B12-Binding Domain... 24 9.9
>pdb|1FUE|A Chain A, Flavodoxin From Helicobacter Pylori
Length = 163
Score = 313 bits (803), Expect = 5e-87
Identities = 157/163 (96%), Positives = 159/163 (97%)
Query: 2 GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQ 61
GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFN FTKVILVAPTAGAGDLQ
Sbjct: 1 GKIGIFFGTDSGNAEAIAEKISKAIGNAEVVDVAKASKEQFNGFTKVILVAPTAGAGDLQ 60
Query: 62 TDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTPTDGY 121
TDWEDFLGTLEASDFA KTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQT TDGY
Sbjct: 61 TDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTSTDGY 120
Query: 122 HFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSFA 164
HF ASKAVEGGKFVGLVIDEDNQDDLTDERI+KWVEQV+GSFA
Sbjct: 121 HFAASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVRGSFA 163
>pdb|1DX9|A Chain A, W57a Apoflavodoxin From Anabaena
pdb|1DX9|B Chain B, W57a Apoflavodoxin From Anabaena
pdb|1DX9|C Chain C, W57a Apoflavodoxin From Anabaena
pdb|1DX9|D Chain D, W57a Apoflavodoxin From Anabaena
Length = 169
Score = 143 bits (361), Expect = 9e-36
Identities = 75/165 (45%), Positives = 98/165 (58%), Gaps = 4/165 (2%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVV--DVAKASKEQFNSFTKVILVAPTAGAGDL 60
KIG+F+GT +G E++AE I GN V DV++A N + +I+ PTA G+L
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTANIGEL 62
Query: 61 QTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKA--KAGKVVGQTPT 118
Q+DWE L+ DF K + G GDQ Y++ F + I + EK + GK VG T
Sbjct: 63 QSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWST 122
Query: 119 DGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
DGY F SKA+ GKFVGL +DEDNQ DLTD+RI WV Q+K F
Sbjct: 123 DGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167
>pdb|1AG9|A Chain A, Flavodoxins That Are Required For Enzyme Activation: The
Structure Of Oxidized Flavodoxin From Escherichia Coli
At 1.8 Angstroms Resolution.
pdb|1AG9|B Chain B, Flavodoxins That Are Required For Enzyme Activation: The
Structure Of Oxidized Flavodoxin From Escherichia Coli
At 1.8 Angstroms Resolution.
pdb|1AHN| E. Coli Flavodoxin At 2.6 Angstroms Resolution
Length = 175
Score = 142 bits (359), Expect = 1e-35
Identities = 75/160 (46%), Positives = 103/160 (63%), Gaps = 5/160 (3%)
Query: 5 GIFFGTDSGNAEAIAEKISKAIGN--AEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQT 62
GIFFG+D+GN E IA+ I K +G A+V D+AK+SKE ++ ++L PT G+ Q
Sbjct: 4 GIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQC 63
Query: 63 DWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYE--KAKAGKVVGQTPTDG 120
DW+DF TLE DF K + L G GDQ+ Y+E F + + I + + + +VG PT G
Sbjct: 64 DWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAG 123
Query: 121 YHFEASKAV-EGGKFVGLVIDEDNQDDLTDERISKWVEQV 159
YHFEASK + + FVGL IDED Q +LT ER+ KWV+Q+
Sbjct: 124 YHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQI 163
>pdb|1RCF| Flavodoxin Complexed With Flavin Mononucleotide (Fmn)
pdb|1FLV| Flavodoxin
Length = 169
Score = 140 bits (354), Expect = 6e-35
Identities = 74/165 (44%), Positives = 97/165 (57%), Gaps = 4/165 (2%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVV--DVAKASKEQFNSFTKVILVAPTAGAGDL 60
KIG+F+GT +G E++AE I GN V DV++A N + +I+ PT G+L
Sbjct: 3 KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGEL 62
Query: 61 QTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKA--KAGKVVGQTPT 118
Q+DWE L+ DF K + G GDQ Y++ F + I + EK + GK VG T
Sbjct: 63 QSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWST 122
Query: 119 DGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
DGY F SKA+ GKFVGL +DEDNQ DLTD+RI WV Q+K F
Sbjct: 123 DGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 167
>pdb|1FTG| Structure Of Apoflavodoxin: Closure Of A TyrosineTRYPTOPHAN
AROMATIC GATE LEADS TO A COMPACT FOLD
pdb|1QHE|A Chain A, Energetics Of A Hydrogen Bond (Charged And Neutral) And Of
A Cation-Pi Interaction In Apoflavodoxin
Length = 168
Score = 140 bits (354), Expect = 6e-35
Identities = 74/165 (44%), Positives = 97/165 (57%), Gaps = 4/165 (2%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVV--DVAKASKEQFNSFTKVILVAPTAGAGDL 60
KIG+F+GT +G E++AE I GN V DV++A N + +I+ PT G+L
Sbjct: 2 KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGEL 61
Query: 61 QTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKA--KAGKVVGQTPT 118
Q+DWE L+ DF K + G GDQ Y++ F + I + EK + GK VG T
Sbjct: 62 QSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWST 121
Query: 119 DGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
DGY F SKA+ GKFVGL +DEDNQ DLTD+RI WV Q+K F
Sbjct: 122 DGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEF 166
>pdb|1CZO|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1D03|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1CZH|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 133 bits (335), Expect = 9e-33
Identities = 69/166 (41%), Positives = 95/166 (56%), Gaps = 5/166 (3%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVVD---VAKASKEQFNSFTKVILVAPTAGAGD 59
KIG+F+GT +G + IAE I + G +VD +A A N++ +I+ PT G G+
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWGVGE 61
Query: 60 LQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTP 117
LQ+DWE L++ +F K + G GDQ YS+ F + + + EK + + VG P
Sbjct: 62 LQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 118 TDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
+GY F SKAV +FVGL IDEDNQ DLT RI WV Q+K F
Sbjct: 122 IEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167
>pdb|1CZN|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
pdb|1OFV| Flavodoxin (Oxidized Form)
pdb|1CZL|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1D04|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials.
pdb|1CZU|A Chain A, Refined Structures Of Oxidized Flavodoxin From Anacystis
Nidulans
Length = 169
Score = 131 bits (329), Expect = 4e-32
Identities = 68/166 (40%), Positives = 94/166 (55%), Gaps = 5/166 (3%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVVD---VAKASKEQFNSFTKVILVAPTAGAGD 59
KIG+F+GT +G + IAE I + G +VD +A A N++ +I+ PT G+
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGE 61
Query: 60 LQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTP 117
LQ+DWE L++ +F K + G GDQ YS+ F + + + EK + + VG P
Sbjct: 62 LQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 118 TDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
+GY F SKAV +FVGL IDEDNQ DLT RI WV Q+K F
Sbjct: 122 IEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167
>pdb|1CZK|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 130 bits (327), Expect = 8e-32
Identities = 68/166 (40%), Positives = 93/166 (55%), Gaps = 5/166 (3%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVVD---VAKASKEQFNSFTKVILVAPTAGAGD 59
KIG+F+GT +G + IAE I + G +VD +A A N++ +I+ PT G+
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGE 61
Query: 60 LQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTP 117
LQ+DWE L++ +F K + G GDQ YS+ F + + EK + + VG P
Sbjct: 62 LQSDWEGIYDDLDSVNFQGKKVAYFGAGDQVGYSDNFQNAMGILEEKISSLGSQTVGYWP 121
Query: 118 TDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
+GY F SKAV +FVGL IDEDNQ DLT RI WV Q+K F
Sbjct: 122 IEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167
>pdb|1CZR|A Chain A, Comparisons Of Wild Type And Mutant Flavodoxins From
Anacystis Nidulans. Structural Determinants Of The Redox
Potentials
Length = 169
Score = 129 bits (324), Expect = 2e-31
Identities = 67/166 (40%), Positives = 94/166 (56%), Gaps = 5/166 (3%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIGNAEVVD---VAKASKEQFNSFTKVILVAPTAGAGD 59
KIG+F+GT +G + IAE I + G +VD +A A N++ +I+ PT G+
Sbjct: 2 KIGLFYGTQTGVTQTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGE 61
Query: 60 LQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEKAKA--GKVVGQTP 117
LQ+DWE L++ +F K + G G+Q YS+ F + + + EK + + VG P
Sbjct: 62 LQSDWEGIYDDLDSVNFQGKKVAYFGAGNQVGYSDNFQDAMGILEEKISSLGSQTVGYWP 121
Query: 118 TDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQVKGSF 163
+GY F SKAV +FVGL IDEDNQ DLT RI WV Q+K F
Sbjct: 122 IEGYDFNESKAVRNNQFVGLAIDEDNQPDLTKNRIKTWVSQLKSEF 167
>pdb|2FCR| Flavodoxin
Length = 173
Score = 85.5 bits (210), Expect = 3e-18
Identities = 61/167 (36%), Positives = 89/167 (52%), Gaps = 10/167 (5%)
Query: 3 KIGIFFGTDSGNAEAIAEKISKAIG-NAEV-VDVAKASKEQ-FNSFTKVILVAPTAGAG- 58
KIGIFF T +GN +A+ I K +G A+ +DV + Q + + L APT G
Sbjct: 1 KIGIFFSTSTGNTTEVADFIGKTLGAKADAPIDVDDVTDPQALKDYDLLFLGAPTWNTGA 60
Query: 59 DLQ---TDWEDFL-GTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEK-AKAG-KV 112
D + T W++FL L D + + GLGD + Y + F + I I++ AK G K
Sbjct: 61 DTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKP 120
Query: 113 VGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKWVEQV 159
VG + D Y +E SK+V GKF+GL +D N ++R++ WVE V
Sbjct: 121 VGFSNPDDYDYEESKSVRDGKFLGLPLDMVNDQIPMEKRVAGWVEAV 167
>pdb|1JA1|A Chain A, Cypor-Triple Mutant
pdb|1JA1|B Chain B, Cypor-Triple Mutant
Length = 622
Score = 32.3 bits (72), Expect = 0.028
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 6 IFFGTDSGNAEAIAEKISK---------AIGNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
+F+G+ +G AE A ++SK + E D+A S + V+ T G
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 57 AGDLQTDWEDFLGTLEASDFATKTI--GLVGLGDQDTYSETFAEG 99
GD + +DF L+ +D + + GLG++ TY A G
Sbjct: 86 EGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNK-TYEHFNAMG 129
>pdb|1J9Z|A Chain A, Cypor-W677g
pdb|1J9Z|B Chain B, Cypor-W677g
Length = 622
Score = 32.3 bits (72), Expect = 0.028
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 6 IFFGTDSGNAEAIAEKISK---------AIGNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
+F+G+ +G AE A ++SK + E D+A S + V+ T G
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 57 AGDLQTDWEDFLGTLEASDFATKTI--GLVGLGDQDTYSETFAEG 99
GD + +DF L+ +D + + GLG++ TY A G
Sbjct: 86 EGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNK-TYEHFNAMG 129
>pdb|1B1C|A Chain A, Crystal Structure Of The Fmn-Binding Domain Of Human
Cytochrome P450 Reductase At 1.93a Resolution
Length = 181
Score = 32.3 bits (72), Expect = 0.028
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 6 IFFGTDSGNAEAIAEKISK---------AIGNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
+F+G+ +G AE A ++SK + E D+A S V+ T G
Sbjct: 22 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYG 81
Query: 57 AGDLQTDWEDFLGTLEASDFATKTI--GLVGLGDQDTYSETFAEG 99
GD + +DF L+ +D + + GLG++ TY A G
Sbjct: 82 EGDPTDNAQDFYDWLQETDVDLSGVKFAVFGLGNK-TYEHFNAMG 125
>pdb|1AMO|A Chain A, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn- And Fad-Containing Enzymes
pdb|1AMO|B Chain B, Three-Dimensional Structure Of Nadph-Cytochrome P450
Reductase: Prototype For Fmn- And Fad-Containing Enzymes
Length = 615
Score = 32.3 bits (72), Expect = 0.028
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 6 IFFGTDSGNAEAIAEKISK---------AIGNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
+F+G+ +G AE A ++SK + E D+A S + V+ T G
Sbjct: 19 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 78
Query: 57 AGDLQTDWEDFLGTLEASDFATKTI--GLVGLGDQDTYSETFAEG 99
GD + +DF L+ +D + + GLG++ TY A G
Sbjct: 79 EGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNK-TYEHFNAMG 122
>pdb|1JA0|A Chain A, Cypor-W677x
pdb|1JA0|B Chain B, Cypor-W677x
Length = 620
Score = 32.3 bits (72), Expect = 0.028
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 6 IFFGTDSGNAEAIAEKISK---------AIGNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
+F+G+ +G AE A ++SK + E D+A S + V+ T G
Sbjct: 26 VFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYG 85
Query: 57 AGDLQTDWEDFLGTLEASDFATKTI--GLVGLGDQDTYSETFAEG 99
GD + +DF L+ +D + + GLG++ TY A G
Sbjct: 86 EGDPTDNAQDFYDWLQETDVDLTGVKFAVFGLGNK-TYEHFNAMG 129
>pdb|1FTK|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2i)
In Complex With Kainate At 1.6 A Resolution
pdb|1GR2|A Chain A, Structure Of A Glutamate Receptor Ligand Binding Core
(Glur2) Complexed With Kainate
Length = 279
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + N+ L D+ +KW
Sbjct: 226 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKW 270
>pdb|1BIX| The Crystal Structure Of The Human Dna Repair Endonuclease Hap1
Suggests The Recognition Of Extra-Helical Deoxyribose At
Dna Abasic Sites
Length = 287
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 21 KISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDW 64
K+S IG+ E + +F+SF V P AG G ++ ++
Sbjct: 110 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEY 153
>pdb|1B74|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
pdb|1B73|A Chain A, Glutamate Racemase From Aquifex Pyrophilus
Length = 254
Score = 25.8 bits (55), Expect = 2.6
Identities = 25/84 (29%), Positives = 39/84 (45%), Gaps = 15/84 (17%)
Query: 18 IAEKISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFA 77
+ ++I K +G+AEVVD ++A ++F K G+ L+ + D L+ F
Sbjct: 184 LKKEIKKFLGDAEVVDSSEALSLSLHNFIK------DDGSSSLELFFTDLSPNLQ---FL 234
Query: 78 TKTIGLVGLGDQDTYSETFAEGIF 101
K I LG Y AEG+F
Sbjct: 235 IKLI----LGRD--YPVKLAEGVF 252
>pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 21 KISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDW 64
K+S IG+ E + +F+SF V P AG G ++ ++
Sbjct: 99 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEY 142
>pdb|1M5D|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Br-Hibo At 1.73 A Resolution
pdb|1M5F|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
pdb|1M5F|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j-
Y702f) In Complex With Acpa At 1.95 A Resolution
Length = 263
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + N+ L D+ +KW
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKW 254
>pdb|1M5B|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5B|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With 2-Me-Tet-Ampa At 1.85 A Resolution.
pdb|1M5C|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Br-Hibo At 1.65 A Resolution
pdb|1M5E|A Chain A, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|B Chain B, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1M5E|C Chain C, X-Ray Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Acpa At 1.46 A Resolution
pdb|1FTJ|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTM|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTJ|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTM|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FTO|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTJ|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Glutamate At 1.9 Resolution
pdb|1FTO|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In The Apo State At 2.0 A Resolution
pdb|1FTL|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTL|B Chain B, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With The Antagonist Dnqx At 1.8 A Resolution
pdb|1FTM|C Chain C, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Ampa At 1.7 Resolution
pdb|1FW0|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Core (S1s2j)
In Complex With Kainate At 2.0 A Resolution
Length = 263
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + N+ L D+ +KW
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKW 254
>pdb|1LB8|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB8|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With Ampa
At 2.3 Resolution
pdb|1LB9|A Chain A, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
pdb|1LB9|B Chain B, Crystal Structure Of The Non-Desensitizing Glur2 Ligand
Binding Core Mutant (S1s2j-L483y) In Complex With
Antagonist Dnqx At 2.3 A Resolution
Length = 263
Score = 25.8 bits (55), Expect = 2.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + N+ L D+ +KW
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKW 254
>pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
Length = 318
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 21 KISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDW 64
K+S IG+ E + +F+SF V P AG G ++ ++
Sbjct: 141 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEY 184
>pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/44 (29%), Positives = 22/44 (49%)
Query: 21 KISKAIGNAEVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDW 64
K+S IG+ E + +F+SF V P AG G ++ ++
Sbjct: 102 KVSYGIGDEEHDQEGRVIVAEFDSFVLVTAYVPNAGRGLVRLEY 145
>pdb|1LXM|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Hexasaccharide Unit Of Hyaluronan
pdb|1I8Q|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase Complexed With Enzyme Product, Unsaturated
Disaccharide Hyaluronan
pdb|1F1S|A Chain A, Crystal Structure Of Streptococcus Agalactiae Hyaluronate
Lyase At 2.1 Angstrom Resolution
Length = 814
Score = 25.0 bits (53), Expect = 4.5
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 10/82 (12%)
Query: 79 KTIGLVGLGDQDTYSETFAEGIFHIYEKAKAGKVVGQTPTDGYHFEASKAVEGGKFVGLV 138
+T+ G+ D++T +G+F+IY ++ PT V K G
Sbjct: 482 RTLNYEGMNDENTRGWYTGDGMFYIYNSDQSHYSNHFWPT----------VNPYKMAGTT 531
Query: 139 IDEDNQDDLTDERISKWVEQVK 160
+ ++D T E +SK + K
Sbjct: 532 EKDAKREDTTKEFMSKHSKDAK 553
>pdb|1CNV| Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 25.0 bits (53), Expect = 4.5
Identities = 16/59 (27%), Positives = 26/59 (43%), Gaps = 10/59 (16%)
Query: 92 YSETFAEGIFHIYEKAKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDE 150
Y++ AE + + + +G+ DG HF+ K V DE N D+L +E
Sbjct: 97 YAKDLAEYLHTYFLSERREGPLGKVALDGIHFDIQKPV----------DELNWDNLLEE 145
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 24.6 bits (52), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 27 GNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
G +VV +AK E+F S I++ TAG
Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAG 190
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 24.6 bits (52), Expect = 5.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 27 GNAEVVDVAKASKEQFNSFTKVILVAPTAG 56
G +VV +AK E+F S I++ TAG
Sbjct: 161 GEKDVVGIAKRGVEKFLSEKMEIIIVDTAG 190
>pdb|1K7Y|A Chain A, E. Coli Meth C-Terminal Fragment (649-1227)
pdb|1K98|A Chain A, Adomet Complex Of Meth C-Terminal Fragment
Length = 577
Score = 24.3 bits (51), Expect = 7.6
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 30 EVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFATKTIGLVGLGDQ 89
E+V+VAK + Q + +I A T+ A +++ G A++T+G+V
Sbjct: 163 EMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLS 222
Query: 90 DTYSETFAEGIFHIYE--KAKAGKVVGQTP 117
DT + F YE + + G+ +TP
Sbjct: 223 DTQRDDFVARTRKEYETVRIQHGRKKPRTP 252
>pdb|1LBC|A Chain A, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
pdb|1LBC|B Chain B, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
pdb|1LBC|C Chain C, Crystal Structure Of Glur2 Ligand Binding Core
(S1s2j-N775s) In Complex With Cyclothiazide (Ctz) As
Well As Glutamate At 1.8 A Resolution
Length = 263
Score = 23.9 bits (50), Expect = 9.9
Identities = 13/45 (28%), Positives = 20/45 (43%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + ++ L D+ +KW
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLSEQGLLDKLKNKW 254
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 23.9 bits (50), Expect = 9.9
Identities = 12/43 (27%), Positives = 19/43 (43%)
Query: 108 KAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDE 150
K G+++ Y E VEG +G+ + +D DD E
Sbjct: 405 KIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFE 447
>pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
pdb|1TRK|A Chain A, Transketolase (E.C.2.2.1.1)
pdb|1TRK|B Chain B, Transketolase (E.C.2.2.1.1)
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
Length = 680
Score = 23.9 bits (50), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 57 AGDLQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSE 94
+G L +WE L T A D A T L +D Y++
Sbjct: 335 SGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQ 372
>pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKB|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKC|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
pdb|1TKC|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
Length = 678
Score = 23.9 bits (50), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 57 AGDLQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSE 94
+G L +WE L T A D A T L +D Y++
Sbjct: 333 SGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQ 370
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 23.9 bits (50), Expect = 9.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 57 AGDLQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSE 94
+G L +WE L T A D A T L +D Y++
Sbjct: 335 SGQLPANWESKLPTYTAKDSAVATRKLSETVLEDVYNQ 372
>pdb|1LBB|A Chain A, Crystal Structure Of The Glur2 Ligand Binding Domain
Mutant (S1s2j-N754d) In Complex With Kainate At 2.1 A
Resolution
Length = 263
Score = 23.9 bits (50), Expect = 9.9
Identities = 13/45 (28%), Positives = 20/45 (43%)
Query: 111 KVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERISKW 155
KV G + GY K G V L + + ++ L D+ +KW
Sbjct: 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLDEQGLLDKLKNKW 254
>pdb|1QAZ|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii From
Sphingomonas Species A1 At 1.78a Resolution
pdb|1HV6|A Chain A, Crystal Structure Of Alginate Lyase A1-Iii Complexed With
Trisaccharide Product
Length = 351
Score = 23.9 bits (50), Expect = 9.9
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 5/104 (4%)
Query: 58 GDLQTDWEDFLGTLEASDFATKTIGLVGLGDQDTYSETFAEGIFHIYEK-AKAGKVVGQT 116
G + D+E + + + T+G + + T +A + ++ +K AKA ++
Sbjct: 71 GPVNPDYEPVVTLYRDFEKISATLGNLYVA---TGKPVYATCLLNMLDKWAKADALLNYD 127
Query: 117 PTDGYHFEASKAVEGGKF-VGLVIDEDNQDDLTDERISKWVEQV 159
P ++ + F + ++ E N D ER+ KW+ +V
Sbjct: 128 PKSQSWYQVEWSAATAAFALSTMMAEPNVDTAQRERVVKWLNRV 171
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
Length = 862
Score = 23.9 bits (50), Expect = 9.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 113 VGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQ 144
V + GYHF + + GLV+DE Q
Sbjct: 496 VSRMEVSGYHFMGERPFKTVLLHGLVLDEKGQ 527
>pdb|1BMT|A Chain A, Methionine Synthase (B12-Binding Domains) (E.C.2.1.1.13)
pdb|1BMT|B Chain B, Methionine Synthase (B12-Binding Domains) (E.C.2.1.1.13)
Length = 246
Score = 23.9 bits (50), Expect = 9.9
Identities = 20/79 (25%), Positives = 35/79 (43%)
Query: 30 EVVDVAKASKEQFNSFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFATKTIGLVGLGDQ 89
E+V+VAK + Q + +I A T+ A +++ G A++T+G+V
Sbjct: 163 EMVNVAKEMERQGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLS 222
Query: 90 DTYSETFAEGIFHIYEKAK 108
DT + F YE +
Sbjct: 223 DTQRDDFVARTRKEYETVR 241
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.313 0.134 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 998,378
Number of Sequences: 13198
Number of extensions: 41101
Number of successful extensions: 115
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 62
Number of HSP's gapped (non-prelim): 38
length of query: 164
length of database: 2,899,336
effective HSP length: 81
effective length of query: 83
effective length of database: 1,830,298
effective search space: 151914734
effective search space used: 151914734
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)