BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644747|ref|NP_206917.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(308 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HNG|A Chain A, Cd2 (Rat) >gi|999827|pdb|1HNG|B Chain B... 32 0.092
pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodo... 29 0.78
pdb|1FQ1|A Chain A, Crystal Structure Of Kinase Associated ... 27 2.3
pdb|1D1R|A Chain A, Nmr Solution Structure Of The Product O... 27 3.9
pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus ... 26 5.0
pdb|1HRH|A Chain A, Ribonuclease H Domain Of HIV-1 Reverse ... 26 6.6
pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic Mon... 26 6.6
pdb|1RDH|A Chain A, Hiv-1 Reverse Transcriptase (Ribonuclea... 26 6.6
pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49) 26 6.6
pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate S... 26 6.6
pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1 >gi... 26 6.6
pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptas... 26 6.6
pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase I... 26 6.6
>pdb|1HNG|A Chain A, Cd2 (Rat)
pdb|1HNG|B Chain B, Cd2 (Rat)
Length = 176
Score = 32.0 bits (71), Expect = 0.092
Identities = 31/112 (27%), Positives = 52/112 (45%), Gaps = 14/112 (12%)
Query: 94 ELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLD-------AIDLKAFER 146
E + +KPFLK IL+NG L + + +++ +S + A+DL+ E
Sbjct: 41 EFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEM 100
Query: 147 VDKP--YSKDIN-----KILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLK 191
V KP Y + N ++LEG ++YQG+ L K ++ NL+
Sbjct: 101 VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLR 152
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 28.9 bits (63), Expect = 0.78
Identities = 29/106 (27%), Positives = 47/106 (43%), Gaps = 16/106 (15%)
Query: 59 TLINA--IQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSL 116
T +NA +++ +T P+D+ T+ N LYP E + ++ LI+ N +
Sbjct: 49 TPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLE--------LIVKNSAT 100
Query: 117 FYEPKVQQALKEFDIVKFSLDAIDLKAFERVDK--PYSKDINKILE 160
+ PK I + LD D K E+ DK K IN +L+
Sbjct: 101 YNGPKHSLT----QISQSMLDLCDEKLKEKEDKLARLEKAINPLLD 142
>pdb|1FQ1|A Chain A, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|1FPZ|C Chain C, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|D Chain D, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|F Chain F, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|A Chain A, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|B Chain B, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
pdb|1FPZ|E Chain E, Crystal Structure Analysis Of Kinase Associated
Phosphatase (Kap) With A Substitution Of The Catalytic
Site Cysteine (Cys140) To A Serine
Length = 212
Score = 27.3 bits (59), Expect = 2.3
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 227 LKCSLFFEGLCVSLP-------KRSITQ-AKKLISCGIDELLALISRRPLSAEEAPLILD 278
+ CS F GLC +LP +R++ + ++L SCGI ++ +R LS P +LD
Sbjct: 37 VNCSQFL-GLC-ALPGCKFKDVRRNVQKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLD 94
>pdb|1D1R|A Chain A, Nmr Solution Structure Of The Product Of The E. Coli Ycih
Gene
Length = 116
Score = 26.6 bits (57), Expect = 3.9
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 146 RVDKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQ 199
R+D+P + + +G++R + G+ V LI GV+ L +AA LK+
Sbjct: 16 RIDEPKAAPVRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKK 69
>pdb|1KKH|A Chain A, Crystal Structure Of The Methanococcus Jannaschii
Mevalonate Kinase
Length = 317
Score = 26.2 bits (56), Expect = 5.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 31 KQCNYNCIYCELGKAKPIERMEEVIKVE 58
K C + +Y E K K E + EV K+E
Sbjct: 189 KNCKFLIVYAEKRKKKTAELVNEVAKIE 216
>pdb|1HRH|A Chain A, Ribonuclease H Domain Of HIV-1 Reverse Transcriptase
pdb|1HRH|B Chain B, Ribonuclease H Domain Of HIV-1 Reverse Transcriptase
Length = 136
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 85 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 133
>pdb|1GXY|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXY|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form A (P21)
pdb|1GXZ|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form B
(P212121)
pdb|1GXZ|B Chain B, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form B
(P212121)
pdb|1GY0|A Chain A, Crystal Structure Of The Eucaryotic
Mono-Adp-Ribosyltransferase Art2.2; Crystal Form C
(P3121)
Length = 226
Score = 25.8 bits (55), Expect = 6.6
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 27 SPSKKQCNYNCIY 39
SP +K+ NYNC+Y
Sbjct: 213 SPKRKKSNYNCLY 225
>pdb|1RDH|A Chain A, Hiv-1 Reverse Transcriptase (Ribonuclease H Domain)
(E.C.2.7.7.49)
pdb|1RDH|B Chain B, Hiv-1 Reverse Transcriptase (Ribonuclease H Domain)
(E.C.2.7.7.49)
Length = 146
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 97 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 145
>pdb|1HMV|A Chain A, Hiv-1 Reverse Transcriptase (E.C.2.7.7.49)
Length = 560
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 511 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 559
>pdb|1QDL|A Chain A, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 422
Score = 25.8 bits (55), Expect = 6.6
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 22/124 (17%)
Query: 173 LVAEVLLIKGVNDSANNLKLIAAFLKQINIARVDLSTIDRPSSFKAPKLSEDE------- 225
L E+ L+ D A +L L+ ++AR DL + P + K P+L E
Sbjct: 255 LKLELELMNSEKDKAEHLMLV-------DLARNDLGKVCVPGTVKVPELMYVEKYSHVQH 307
Query: 226 --------LLKCSLFFEGLCVSLPKRSITQAKKLISCGIDELLALISRRPLSAEEAPLIL 277
L K L + P +++ A K ++ I E L R P + +
Sbjct: 308 IVSKVIGTLKKKYNALNVLSATFPAGTVSGAPKPMAMNIIETLEEYKRGPYAGAVGFISA 367
Query: 278 DSNA 281
D NA
Sbjct: 368 DGNA 371
>pdb|1HQU|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HPZ|A Chain A, Human Immunodeficiency Virus Type 1
pdb|1HQE|A Chain A, Human Immunodeficiency Virus Type 1
Length = 560
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 511 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 559
>pdb|1IKX|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
The Inhibitor Pnu142721
pdb|1IKY|A Chain A, Hiv-1 Reverse Transcriptase In Complex With The Inhibitor
Msc194
pdb|1IKV|A Chain A, K103n Mutant Hiv-1 Reverse Transcriptase In Complex With
Efivarenz
Length = 560
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 511 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 559
>pdb|1IKW|A Chain A, Wild Type Hiv-1 Reverse Transcriptase In Complex With
Efavirenz
Length = 560
Score = 25.8 bits (55), Expect = 6.6
Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 148 DKPYSKDINKILEGILRFSQIYQGQLVAEVLLIKGVNDSANNLKLIAAFLKQI 200
DK S+ +N+I+E +++ ++Y +A V KG+ + KL++A +++I
Sbjct: 511 DKSESELVNQIIEQLIKKEKVY----LAWVPAHKGIGGNEQVDKLVSAGIRKI 559
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.139 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,608,881
Number of Sequences: 13198
Number of extensions: 63462
Number of successful extensions: 193
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 13
length of query: 308
length of database: 2,899,336
effective HSP length: 88
effective length of query: 220
effective length of database: 1,737,912
effective search space: 382340640
effective search space used: 382340640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)