BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645779|ref|NP_207956.1| tetracycline resistance
protein tetA(P), putative [Helicobacter pylori 26695]
         (386 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1K5D|B  Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-...    26  8.7
pdb|1D9T|A  Chain A, Human Glucosamine-6-Phosphate Deaminase...    26  8.7

>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
 pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
 pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
          Length = 201

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 193 LKLLKEQVKGSLKELKDNPKLKILLVGHLITPV 225
           +KLLK + KG+++ L    K   +   H ITP+
Sbjct: 75  VKLLKHKEKGAIRLLMRRDKTLKICANHYITPM 107



>pdb|1D9T|A Chain A, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
 pdb|1D9T|B Chain B, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
 pdb|1D9T|C Chain C, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
 pdb|1D9T|D Chain D, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
 pdb|1D9T|E Chain E, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
 pdb|1D9T|F Chain F, Human Glucosamine-6-Phosphate Deaminase Isomerase At 1.75
           A
          Length = 289

 Score = 25.8 bits (55), Expect = 8.7
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 153 LYLKVHAMLYIVGIFLIMLCVLTIIFYFKEKEGDFKSQKSLK 194
           L LKV  + Y  G+ L+   ++  ++  KEKE + KSQ S K
Sbjct: 245 LELKVKTVKYFKGLMLVHNKLVDPLYSIKEKETE-KSQSSKK 285



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.331    0.144    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,826,257
Number of Sequences: 13198
Number of extensions: 65308
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 2,899,336
effective HSP length: 90
effective length of query: 296
effective length of database: 1,711,516
effective search space: 506608736
effective search space used: 506608736
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)