BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645781|ref|NP_207958.1| hypothetical protein
[Helicobacter pylori 26695]
         (471 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1AYX|    Crystal Structure Of Glucoamylase From Saccharo...    30  0.76
pdb|1CBY|    Delta-Endotoxin                                       28  2.9
pdb|1IIW|A  Chain A, Glur0 Ligand Binding Core: Closed-Cleft...    26  8.4
pdb|1II5|A  Chain A, Crystal Structure Of The Glur0 Ligand B...    26  8.4
pdb|1G66|A  Chain A, Acetylxylan Esterase At 0.90 Angstrom R...    26  8.4

>pdb|1AYX|   Crystal Structure Of Glucoamylase From Saccharomycopsis Fibuligera
           At 1.7 Angstroms
          Length = 492

 Score = 29.6 bits (65), Expect = 0.76
 Identities = 33/140 (23%), Positives = 48/140 (33%), Gaps = 29/140 (20%)

Query: 64  GFSLLPKKVSDHVLKGKIGGMVGSIFYDGTKKFED-------SSVAYNLFGYYDGFMGGY 116
           GF L  +    H     +     +   D  K F+D       SS A  L  Y  G  GG+
Sbjct: 205 GFDLWEENQGRHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGF 264

Query: 117 TN-----ILQSDDLATQNMKYNKNVRNYVFS--------------DAYLEYAYKNYF--- 154
            N     I+++ DL  QN +   +   Y+                D   EY  ++Y+   
Sbjct: 265 VNTDVNHIVENPDLLQQNSRQGLDSATYIGPLLTHDIGESSSTPFDVDNEYVLQSYYLLL 324

Query: 155 EIKAGRYLSTMPYKSGQTQG 174
           E    RY     Y +G   G
Sbjct: 325 EDNKDRYSVNSAYSAGAAIG 344



>pdb|1CBY|   Delta-Endotoxin
          Length = 259

 Score = 27.7 bits (60), Expect = 2.9
 Identities = 11/30 (36%), Positives = 19/30 (62%)

Query: 316 NGQNLIILQRFDINNYNVSIAFYKVFQNAN 345
           +  N  I+  F++NNYN+  + +K+ QN N
Sbjct: 227 HSSNAPIVDIFNVNNYNLYHSNHKIIQNLN 256



>pdb|1IIW|A Chain A, Glur0 Ligand Binding Core: Closed-Cleft Ligand-Free
           Structure
 pdb|1IIT|A Chain A, Glur0 Ligand Binding Core Complex With L-Serine
          Length = 232

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 175 FQISGQYKKARLTWFS-SFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLY 233
           F   G+ K A  T  S    RA A        +  + + S G T   +G  D     +L 
Sbjct: 16  FVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELD-----ILI 70

Query: 234 GTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTG 279
           G  +V     P R  IEG  +  P   +  G+ I   + P F   G
Sbjct: 71  GPISVT----PERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVG 112



>pdb|1II5|A Chain A, Crystal Structure Of The Glur0 Ligand Binding Core Complex
           With L-Glutamate
          Length = 233

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 175 FQISGQYKKARLTWFS-SFGRAFAYGSFLMDWFAARTTYSGGFTKNDKGGYDSHGRKVLY 233
           F   G+ K A  T  S    RA A        +  + + S G T   +G  D     +L 
Sbjct: 16  FVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELD-----ILI 70

Query: 234 GTHAVQLTYKPHRFLIEGFYYLSPQIFNAPGVKIGWDSNPNFSGTG 279
           G  +V     P R  IEG  +  P   +  G+ I   + P F   G
Sbjct: 71  GPISVT----PERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVG 112



>pdb|1G66|A Chain A, Acetylxylan Esterase At 0.90 Angstrom Resolution
 pdb|1BS9|   Acetylxylan Esterase From P. Purpurogenum Refined At 1.10
           Angstroms
          Length = 207

 Score = 26.2 bits (56), Expect = 8.4
 Identities = 14/39 (35%), Positives = 19/39 (47%)

Query: 352 GNPSGVIMGSNSVYAGFTGTALKRDAATIFLSCGGTHFA 390
           G+ S V+ G  S Y G T  A+   A     SCGG  ++
Sbjct: 20  GSSSTVVNGVLSAYPGSTAEAINYPACGGQSSCGGASYS 58



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.321    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,152,056
Number of Sequences: 13198
Number of extensions: 152077
Number of successful extensions: 280
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 6
length of query: 471
length of database: 2,899,336
effective HSP length: 92
effective length of query: 379
effective length of database: 1,685,120
effective search space: 638660480
effective search space used: 638660480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)