BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645785|ref|NP_207962.1| glutamine ABC transporter,
ATP-binding protein (glnQ) [Helicobacter pylori 26695]
(248 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Pe... 202 2e-53
pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacteria... 124 8e-30
pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding... 123 2e-29
pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformati... 119 4e-28
pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free ... 117 9e-28
pdb|1G29|1 Chain 1, Malk >gi|12084695|pdb|1G29|2 Chain 2, Malk 117 9e-28
pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc T... 105 4e-24
pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli... 86 5e-18
pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atp... 85 7e-18
pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B... 49 5e-07
pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Out... 31 0.12
pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 1... 27 2.2
pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Gua... 27 2.2
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Ki... 27 2.2
pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At Hig... 27 2.2
pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamid... 27 2.9
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 26 3.8
pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Ra... 26 3.8
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase >... 26 3.8
pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin... 26 3.8
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts >gi|11514... 26 4.9
pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P2... 26 4.9
pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed Wi... 26 4.9
pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp... 26 4.9
pdb|1AK2| Adenylate Kinase Isoenzyme-2 >gi|1633467|pdb|2A... 25 6.4
pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Co... 25 6.4
pdb|1AYL| Phosphoenolpyruvate Carboxykinase 25 6.4
pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Compl... 25 8.4
pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domai... 25 8.4
pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvat... 25 8.4
pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Cap... 25 8.4
pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim Fro... 25 8.4
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 202 bits (515), Expect = 2e-53
Identities = 105/243 (43%), Positives = 160/243 (65%), Gaps = 12/243 (4%)
Query: 10 LKKTYQNHLVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLN 69
L K Y H VL G++ G+V I+G SG GKSTFL+C+N LEK +EG I+ N+N
Sbjct: 12 LHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71
Query: 70 N--------KATNWNQMR---QKIGMVFQNYELFPHLNVLDNILLAPMKVQKRSKDEVIS 118
K + NQ+R ++ MVFQ++ L+ H+ VL+N++ AP++V SK +
Sbjct: 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE 131
Query: 119 QAIELLKRVGLEHKQQA-YPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKE 177
+A++ L +VG++ + Q YP LSGGQ+QRV+I R+L M P ++LFDE T++LDPE+V E
Sbjct: 132 RALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 178 VLEVILELATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEFFNHPKSQRAQK 237
VL ++ +LA G +MV+VTHEM FA+ ++ ++F GKI EE + ++ F +P+S R Q+
Sbjct: 192 VLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQ 251
Query: 238 FLE 240
FL+
Sbjct: 252 FLK 254
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 124 bits (312), Expect = 8e-30
Identities = 79/234 (33%), Positives = 131/234 (55%), Gaps = 13/234 (5%)
Query: 4 ILETKGLKKTYQNH----LVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEG 59
+++ K + KTY+ L +N + +GE I+GPSG GKST L + L+K EG
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 60 EILFENTNLNNKATN--WNQMRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKR---SKD 114
E+ +N N+ + R KIG VFQ + L P L L+N+ L P+ + R S +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-PLIFKYRGAMSGE 119
Query: 115 EVISQAIELLKRVGLEHKQQAY-PKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPE 173
E +A+E LK LE + + P +LSGGQ+QRVAI R+L P I+L D+ T +LD +
Sbjct: 120 ERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179
Query: 174 MVKEVLEVILEL-ATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEF 226
+++++++ +L G ++V+VTH++ A + +I++ G++ E + F
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 123 bits (308), Expect = 2e-29
Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 13/233 (5%)
Query: 5 LETKGLKKTYQNH----LVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGE 60
++ K + KTY+ L +N + +GE I GPSG GKST L + L+K EGE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 61 ILFENTNLNNKATN--WNQMRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKR---SKDE 115
+ +N N+ + R KIG VFQ + L P L L+N+ L P+ + R S +E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-PLIFKYRGAXSGEE 120
Query: 116 VISQAIELLKRVGLEHKQQAY-PKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEM 174
+A+E LK LE + + P +LSGGQ+QRVAI R+L P I+L DE T +LD +
Sbjct: 121 RRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKT 180
Query: 175 VKEVLEVILEL-ATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEF 226
+++ +++ +L G ++V+VTH++ A + +I++ G++ E + F
Sbjct: 181 GEKIXQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF 232
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 119 bits (297), Expect = 4e-28
Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 4 ILETKGLKKTYQNHLVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILF 63
IL T+ + K + LDG++ ++NKG+V +I+GP+G GKST + + G K +EG + F
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 64 ENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPM------------KVQKR 111
EN ++ NK I FQ + + VL+N+L+ + K
Sbjct: 67 ENKDITNKEPA-ELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 112 SKDEVISQAIELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLD 171
++E++ +A ++L+ + L H ELSGGQ + V I R+L PK+++ DE A +
Sbjct: 126 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVA 185
Query: 172 PEMVKEVLEVILELATTGMSMVIVTHEMKFA-QKIAHKIVFFDSGKIAEENNAKEFFN 228
P + ++ +LEL G++ +I+ H + I H V F+ IAE +E N
Sbjct: 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 117 bits (294), Expect = 9e-28
Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 14/238 (5%)
Query: 4 ILETKGLKKTYQNHLVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILF 63
IL T+ + K + LDG++ ++NKG+V +I+GP+G GKST + + G K +EG + F
Sbjct: 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66
Query: 64 ENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPM------------KVQKR 111
EN ++ NK I FQ + + VL+N+L+ + K
Sbjct: 67 ENKDITNKEPA-ELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIP 125
Query: 112 SKDEVISQAIELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLD 171
++E++ +A ++L+ + L H ELSGGQ + V I R+L PK+++ D+ A +
Sbjct: 126 KEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVA 185
Query: 172 PEMVKEVLEVILELATTGMSMVIVTHEMKFA-QKIAHKIVFFDSGKIAEENNAKEFFN 228
P + ++ +LEL G++ +I+ H + I H V F+ IAE +E N
Sbjct: 186 PGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 117 bits (294), Expect = 9e-28
Identities = 68/220 (30%), Positives = 123/220 (55%), Gaps = 4/220 (1%)
Query: 23 INFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLNN--KATNWNQMRQ 80
++ + GE ++LGPSGCGK+T L+ + GLE+ + G+I + + + K +
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81
Query: 81 KIGMVFQNYELFPHLNVLDNILLAPMKVQKRSKDEVISQAIELLKRVGLEHKQQAYPKEL 140
I MVFQ+Y L+PH+ V DNI P+K++K + E+ + E+ + +GL P+EL
Sbjct: 82 DIAMVFQSYALYPHMTVYDNIAF-PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140
Query: 141 SGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEM-VKEVLEVILELATTGMSMVIVTHEM 199
SGGQ+QRVA+ R++ +P++ L DE ++LD ++ V+ E+ G++ + VTH+
Sbjct: 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200
Query: 200 KFAQKIAHKIVFFDSGKIAEENNAKEFFNHPKSQRAQKFL 239
A + +I + G + + + E ++ P + F+
Sbjct: 201 VEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFI 240
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 105 bits (263), Expect = 4e-24
Identities = 67/235 (28%), Positives = 122/235 (51%), Gaps = 6/235 (2%)
Query: 3 VILETKGLKKTYQNHLVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEIL 62
++LE + L Y + GI+ + +G++ ++G +G GK+T L + GL + +G+I+
Sbjct: 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 63 FENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKRSKDEVISQAIE 122
F ++ NK + R I +V + +FP L V +N+ R E I + +E
Sbjct: 65 FNGQDITNKPAHVIN-RXGIALVPEGRRIFPELTVYENLXXG---AYNRKDKEGIKRDLE 120
Query: 123 LLKRV--GLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKEVLE 180
+ + L+ + + LSGG++Q +AI R+L RPK++ DE + L P +V EV E
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFE 180
Query: 181 VILELATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEFFNHPKSQRA 235
VI ++ G ++++V A K+AH ++G+I E A E ++ ++A
Sbjct: 181 VIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEXVRKA 235
>pdb|1JSQ|A Chain A, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|B Chain B, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|C Chain C, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|D Chain D, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|E Chain E, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|F Chain F, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|G Chain G, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
pdb|1JSQ|H Chain H, Structure Of Msba From Escherichia Coli: A Homolog Of The
Multidrug Resistance Atp Binding Cassette (Abc)
Transporters
Length = 582
Score = 85.5 bits (210), Expect = 5e-18
Identities = 69/232 (29%), Positives = 111/232 (47%), Gaps = 12/232 (5%)
Query: 5 LETKGLKKTYQNHLV--LDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEIL 62
+E + + TY V L IN + G+ ++G SG GKST + I+EGEIL
Sbjct: 342 VEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEIL 401
Query: 63 FENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKRSKDEVISQ--- 119
+ +L +R ++ +V QN LF V +NI A + R + E ++
Sbjct: 402 MDGHDLREYTLA--SLRNQVALVSQNVHLFND-TVANNIAYARTEQYSREQIEEAARMAY 458
Query: 120 AIELLKRV--GLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKE 177
A++ + ++ GL+ LSGGQ+QR+AI R+L I++ DE T++LD E +
Sbjct: 459 AMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERA 518
Query: 178 VLEVILELATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEFFNH 229
+ + EL S+VI H + +K A +IV + G I E + H
Sbjct: 519 IQAALDELQKNRTSLVI-AHRLSTIEK-ADEIVVVEDGVIVERGTHNDLLEH 568
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 85.1 bits (209), Expect = 7e-18
Identities = 60/210 (28%), Positives = 108/210 (50%), Gaps = 14/210 (6%)
Query: 18 LVLDGINFTLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLNNKATNWNQ 77
LVL G+ FTL GEV ++GP+G GKST L L + G++L + L +
Sbjct: 31 LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY-- 88
Query: 78 MRQKIGMVFQNYELFPHLNVLDNILLAPMKVQKRSKDEVISQAIELLKRVGLEHKQQAYP 137
+ +++ V Q ++F ++ +NI A QK + +E+ + A++ + Q Y
Sbjct: 89 LHRQVAAVGQEPQVFGR-SLQENI--AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD 145
Query: 138 KE-------LSGGQKQRVAIVRSLCMRPKIMLFDEVTASLDPEMVKEVLEVILELATT-G 189
E LSGGQ+Q VA+ R+L +P +++ D+ T++LD +V +++ E
Sbjct: 146 TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 205
Query: 190 MSMVIVTHEMKFAQKIAHKIVFFDSGKIAE 219
S++++T + ++ H I+F + G I E
Sbjct: 206 RSVLLITQHLSLVEQADH-ILFLEGGAIRE 234
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.9 bits (115), Expect = 5e-07
Identities = 48/213 (22%), Positives = 89/213 (41%), Gaps = 16/213 (7%)
Query: 30 GEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLNNKATNWNQMRQKIGMVFQNY 89
GE+ ++GP+G GKST L G +G I F L W+ + + + +
Sbjct: 26 GEILHLVGPNGAGKSTLLARXAGXTS-GKGSIQFAGQPLEA----WSATKLALHRAYLSQ 80
Query: 90 ELFPHLNVLDNILLAPMKVQKRSKDEVISQAIELLKRVGLEHKQQAYPKELSGGQKQRV- 148
+ P L + +++ E+++ L L+ K +LSGG+ QRV
Sbjct: 81 QQTPPFATPVWHYLT-LHQHDKTRTELLNDVAGAL---ALDDKLGRSTNQLSGGEWQRVR 136
Query: 149 --AIVRSLCMRP----KIMLFDEVTASLDPEMVKEVLEVILELATTGMSMVIVTHEMKFA 202
A+V + + +++L DE SLD + +++ L G+++V +H++
Sbjct: 137 LAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHT 196
Query: 203 QKIAHKIVFFDSGKIAEENNAKEFFNHPKSQRA 235
+ AH+ GK +E P +A
Sbjct: 197 LRHAHRAWLLKGGKXLASGRREEVLTPPNLAQA 229
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.2 bits (69), Expect = 0.12
Identities = 25/102 (24%), Positives = 48/102 (46%), Gaps = 16/102 (15%)
Query: 50 LNGLEKINEGEILFENTNLNNKATNWNQMRQKIGMVFQNYELFPHLNVLDNILLA--PMK 107
L+G+EK+ +L+ + NNK TNW ++ + L+ L+++LLA P+
Sbjct: 108 LSGIEKLVNLRVLYMS---NNKITNWGEI-----------DKLAALDKLEDLLLAGNPLY 153
Query: 108 VQKRSKDEVISQAIELLKRVGLEHKQQAYPKELSGGQKQRVA 149
+ + IE++KR+ K P ++ ++ VA
Sbjct: 154 NDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVA 195
>pdb|1D3E|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 16 (Hrv16) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 285
Score = 26.9 bits (58), Expect = 2.2
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 26 TLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLNNKA-TNWNQMRQKIGM 84
TL++ V LG SGC + L ++ N N+++ T WN Q++
Sbjct: 61 TLDEMSVESFLGRSGCIHESVLDIVD---------------NYNDQSFTKWNINLQEMAQ 105
Query: 85 VFQNYELFPHLNVLDNILLAPMKVQK 110
+ + +E+F + I + P K
Sbjct: 106 IRRKFEMFTYARFDSEITMVPSVAAK 131
>pdb|1GKY| Guanylate Kinase (E.C.2.7.4.8) Complex With Guanosine
Monophosphate
Length = 187
Score = 26.9 bits (58), Expect = 2.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 34 VILGPSGCGKSTFLKCL 50
VI GPSG GKST LK L
Sbjct: 6 VISGPSGTGKSTLLKKL 22
>pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
Length = 186
Score = 26.9 bits (58), Expect = 2.2
Identities = 13/17 (76%), Positives = 13/17 (76%)
Query: 34 VILGPSGCGKSTFLKCL 50
VI GPSG GKST LK L
Sbjct: 5 VISGPSGTGKSTLLKKL 21
>pdb|1AYM|1 Chain 1, Human Rhinovirus 16 Coat Protein At High Resolution
pdb|1QJU|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp61209
pdb|1QJX|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Win68934
pdb|1QJY|1 Chain 1, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099
pdb|1AYN|1 Chain 1, Human Rhinovirus 16 Coat Protein
pdb|1C8M|1 Chain 1, Refined Crystal Structure Of Human Rhinovirus 16 Complexed
With Vp63843 (Pleconaril), An Anti-Picornaviral Drug
Currently In Clinical Trials
Length = 285
Score = 26.9 bits (58), Expect = 2.2
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 26 TLNKGEVAVILGPSGCGKSTFLKCLNGLEKINEGEILFENTNLNNKA-TNWNQMRQKIGM 84
TL++ V LG SGC + L ++ N N+++ T WN Q++
Sbjct: 61 TLDEMSVESFLGRSGCIHESVLDIVD---------------NYNDQSFTKWNINLQEMAQ 105
Query: 85 VFQNYELFPHLNVLDNILLAPMKVQK 110
+ + +E+F + I + P K
Sbjct: 106 IRRKFEMFTYARFDSEITMVPSVAAK 131
>pdb|1JEH|B Chain B, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase
Length = 478
Score = 26.6 bits (57), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 92 FPHLNVLDNILLAPMKVQKRSKDEVISQAIELLK 125
FPH+ V+ ++ PM K ++ + A+E+LK
Sbjct: 317 FPHIKVVGDVTFGPMLAHKAEEEGI--AAVEMLK 348
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 26.2 bits (56), Expect = 3.8
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 170 LDPEMVKEVLEVILE--LATTGMSMVIVTHEMKFAQKIAHKIVFFDSGKIAEENNAKEFF 227
L P+ V + L + ++ + +G+ V V K+ KIVF +GK+ E + +
Sbjct: 224 LPPKPVDKPLRIPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFMPAGKVGEVRSIET-- 281
Query: 228 NHPKSQRAQ 236
+H K +A+
Sbjct: 282 HHTKMDKAE 290
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 26.2 bits (56), Expect = 3.8
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 140 LSGGQKQRVAIVRSLCM------RPKIMLFDEVTASLDPEMVKEVLEVILELATTGMSMV 193
LSGG++ + + L M +++ DE T LD E ++++ ++ ++
Sbjct: 84 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 143
Query: 194 IVTHEMKFAQKIAHKI 209
+V+H+ + H I
Sbjct: 144 LVSHDEELKDAADHVI 159
>pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2T|B Chain B, Crystal Structure Of Atp-Free Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 26.2 bits (56), Expect = 3.8
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 140 LSGGQKQRVAIVRSLCM------RPKIMLFDEVTASLDPEMVKEVLEVILELATTGMSMV 193
LSGG++ + + L M +++ DE T LD E ++++ ++ ++
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 194 IVTHEMKFAQKIAHKI 209
+V+H+ + H I
Sbjct: 118 LVSHDEELKDAADHVI 133
>pdb|1KCY|A Chain A, Nmr Solution Structure Of Apo Calbindin D9k (F36g + P43m
Mutant)
Length = 75
Score = 26.2 bits (56), Expect = 3.8
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 10 LKKTYQNHLVLDGINFTLNKGEVAVIL---GPSGC-GKSTFLKCLNGLEKINEGEILFE 64
LK ++ + +G L+K E+ ++L GPS G ST + L+K +GE+ FE
Sbjct: 6 LKGIFEKYAAKEGDPNQLSKEELKLLLQTEGPSLLKGMSTLDELFEELDKNGDGEVSFE 64
>pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
Length = 649
Score = 25.8 bits (55), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 31 EVAVILGPSGCGKSTFLK 48
E+ +I GP+ GKSTFL+
Sbjct: 461 ELVLITGPNXAGKSTFLR 478
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 25.8 bits (55), Expect = 4.9
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 102 LLAPMKVQKRSKDEVISQA----IELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMR 157
++A +V+ DE + + I LLK L+HK ++ K ++ +V C +
Sbjct: 29 IVALKRVRLDDDDEGVPSSALREICLLKE--LKHKNIVRLHDVLHSDK-KLTLVFEFCDQ 85
Query: 158 PKIMLFDEVTASLDPEMVKEVLEVILE 184
FD LDPE+VK L +L+
Sbjct: 86 DLKKYFDSCNGDLDPEIVKSFLFQLLK 112
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 25.8 bits (55), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 31 EVAVILGPSGCGKSTFLK 48
E+ +I GP+ GKSTFL+
Sbjct: 577 ELVLITGPNXAGKSTFLR 594
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 25.8 bits (55), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 31 EVAVILGPSGCGKSTFLK 48
E+ +I GP+ GKSTFL+
Sbjct: 577 ELVLITGPNXAGKSTFLR 594
>pdb|1AK2| Adenylate Kinase Isoenzyme-2
pdb|2AK2| Adenylate Kinase Isoenzyme-2
Length = 233
Score = 25.4 bits (54), Expect = 6.4
Identities = 11/17 (64%), Positives = 12/17 (69%)
Query: 29 KGEVAVILGPSGCGKST 45
KG AV+LGP G GK T
Sbjct: 15 KGVRAVLLGPPGAGKGT 31
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1AQ2| Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 25.4 bits (54), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (75%)
Query: 29 KGEVAVILGPSGCGKST 45
KG+VAV G SG GK+T
Sbjct: 240 KGDVAVFFGLSGTGKTT 256
>pdb|1AYL| Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 25.4 bits (54), Expect = 6.4
Identities = 11/17 (64%), Positives = 13/17 (75%)
Query: 29 KGEVAVILGPSGCGKST 45
KG+VAV G SG GK+T
Sbjct: 240 KGDVAVFFGLSGTGKTT 256
>pdb|1E0J|B Chain B, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|C Chain C, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|E Chain E, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|F Chain F, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0K|A Chain A, Gp4d Helicase From Phage T7
pdb|1E0K|B Chain B, Gp4d Helicase From Phage T7
pdb|1E0K|C Chain C, Gp4d Helicase From Phage T7
pdb|1E0K|D Chain D, Gp4d Helicase From Phage T7
pdb|1E0K|E Chain E, Gp4d Helicase From Phage T7
pdb|1E0K|F Chain F, Gp4d Helicase From Phage T7
pdb|1E0J|A Chain A, Gp4d Helicase From Phage T7 Adpnp Complex
pdb|1E0J|D Chain D, Gp4d Helicase From Phage T7 Adpnp Complex
Length = 289
Score = 25.0 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 30 GEVAVILGPSGCGKSTFLK 48
GEV ++ SG GKSTF++
Sbjct: 45 GEVIMVTSGSGMGKSTFVR 63
>pdb|1CR1|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dttp
pdb|1CR4|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Dtdp
pdb|1CR2|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene 4
Protein Of Bacteriophage T7: Complex With Datp
pdb|1CR0|A Chain A, Crystal Structure Of The Helicase Domain Of The Gene4
Protein Of Bacteriophage T7
Length = 296
Score = 25.0 bits (53), Expect = 8.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 30 GEVAVILGPSGCGKSTFLK 48
GEV ++ SG GKSTF++
Sbjct: 35 GEVIMVTSGSGMGKSTFVR 53
>pdb|1II2|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
pdb|1II2|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
(Pepck) From Trypanosoma Cruzi
Length = 524
Score = 25.0 bits (53), Expect = 8.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 16 NHLVLDGINFTLNKGEVAVILGPSGCGKST 45
NHL + +G+V V G SG GK+T
Sbjct: 199 NHLCMHASANVGKQGDVTVFFGLSGTGKTT 228
>pdb|1QHD|A Chain A, Crystal Structure Of Vp6, The Major Capsid Protein Of
Group A Rotavirus
Length = 398
Score = 25.0 bits (53), Expect = 8.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 61 ILFENTNLNNKAT---NWN--QMRQKIGMVFQNYELFPH 94
I F+ N +N + NWN RQ+ G F +FP+
Sbjct: 123 IKFKRINFDNSSEYIENWNLQNRRQRTGFTFHKPNIFPY 161
>pdb|1HG3|A Chain A, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|B Chain B, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|C Chain C, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|D Chain D, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|E Chain E, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|F Chain F, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|G Chain G, Crystal Structure Of Tetrameric Tim From Pyrococcus
Woesei.
pdb|1HG3|H Chain H, Crystal Structure Of Tetrameric Tim From Pyrococcus Woesei
Length = 225
Score = 25.0 bits (53), Expect = 8.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 111 RSKDEVISQAIELLKRVGLEHKQQAYPKELSGGQKQRVAIVRSLCMRPKIMLFDEVTASL 170
++K EVI+ +EL+K+V E K +S G+ + AI ++L VT +
Sbjct: 157 KAKPEVITNTVELVKKVNPEVKVLC-GAGISTGEDVKKAIELGTV---GVLLASGVTKAK 212
Query: 171 DPE 173
DPE
Sbjct: 213 DPE 215
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.136 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,323,938
Number of Sequences: 13198
Number of extensions: 50374
Number of successful extensions: 194
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 32
length of query: 248
length of database: 2,899,336
effective HSP length: 86
effective length of query: 162
effective length of database: 1,764,308
effective search space: 285817896
effective search space used: 285817896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)