BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645787|ref|NP_207964.1| hypothetical protein
[Helicobacter pylori 26695]
(183 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase 31 0.096
pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human U... 31 0.096
pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human U... 31 0.096
pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human U... 31 0.096
pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor W... 27 1.8
pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The ... 26 3.1
pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Dom... 26 3.1
pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Medi... 26 3.1
pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State... 25 4.0
pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Esche... 25 5.3
pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subun... 25 5.3
pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase ... 25 5.3
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase
Length = 367
Score = 30.8 bits (68), Expect = 0.096
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 99 DGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAK 158
DG + Q G GLD PK++RE G+ +TL G + P + ++ ++G + K
Sbjct: 264 DGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD-PCALYASEEEIGQLVK 322
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 30.8 bits (68), Expect = 0.096
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 99 DGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAK 158
DG + Q G GLD PK++RE G+ +TL G + P + ++ ++G + K
Sbjct: 285 DGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD-PCALYASEEEIGQLVK 343
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 30.8 bits (68), Expect = 0.096
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 99 DGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAK 158
DG + Q G GLD PK++RE G+ +TL G + P + ++ ++G + K
Sbjct: 285 DGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD-PCALYASEEEIGQLVK 343
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii
Decarboxylase
Length = 388
Score = 30.8 bits (68), Expect = 0.096
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 99 DGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITLIGKGEVPYLILETDCQVGDIAK 158
DG + Q G GLD PK++RE G+ +TL G + P + ++ ++G + K
Sbjct: 285 DGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVTLQGNLD-PCALYASEEEIGQLVK 343
>pdb|1K90|C Chain C, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|C Chain C, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K8T|A Chain A, Crystal Structure Analysis Of The Edema Factor
pdb|1K90|A Chain A, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
pdb|1K93|A Chain A, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K93|B Chain B, Crystal Structure Of Edema Factor Complexed With
Calmodulin
pdb|1K90|B Chain B, Crystal Structure Of The Edema Factor With Calmodulin And
3'-Datp
Length = 510
Score = 26.6 bits (57), Expect = 1.8
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 20/118 (16%)
Query: 29 FVDGDLDIQKFSYEDSLLKKGDPNGVHKVQVRDYKGKMQEAEI---HSEIRIALKPGV-- 83
++ D D+ K + ++KG N +K + +++G++ + + H I + G+
Sbjct: 73 YIPFDQDLSKKHGQQLAVEKG--NLENKKSITEHEGEIGKIPLKLDHLRIEELKENGIIL 130
Query: 84 --KKEVKKGKIYSAQINDGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITLIGK 139
KKE+ GK Y ++ Y FR+ + Q + K+G+ IT++G+
Sbjct: 131 KGKKEIDNGKKYYLLESNNQVYEFRISDENNEV----------QYKTKEGK-ITVLGE 177
>pdb|1L0A|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
pdb|1KZZ|A Chain A, Downstream Regulator Tank Binds To The Cd40 Recognition
Site On Traf3
Length = 192
Score = 25.8 bits (55), Expect = 3.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 18 GLLSVQLDARSFVDG--DLDIQKFSYEDSLLKKGDPNGVHKVQVRDYKGKMQEAEIHSEI 75
GLL QL + D+ + +L+ NGV ++RDYK + QEA + +
Sbjct: 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTL 62
Query: 76 RIALKP 81
+ +P
Sbjct: 63 SLYSQP 68
>pdb|1C4R|G Chain G, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|E Chain E, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|A Chain A, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|C Chain C, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|B Chain B, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|D Chain D, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|F Chain F, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
pdb|1C4R|H Chain H, The Structure Of The Ligand-Binding Domain Of Neurexin
1beta: Regulation Of Lns Domain Function By Alternative
Splicing
Length = 182
Score = 25.8 bits (55), Expect = 3.1
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 94 SAQINDGMCYAFRMLQTGDNTTGLDSKEFPKQSREKKGRVITL 136
+A INDG + R ++G N T L +P R GR +T+
Sbjct: 85 NAIINDGKYHVVRFTRSGGNAT-LQVDSWPVIERYPAGRQLTI 126
>pdb|1FLK|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLK|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|A Chain A, Molecular Basis For Cd40 Signaling Mediated By Traf3
pdb|1FLL|B Chain B, Molecular Basis For Cd40 Signaling Mediated By Traf3
Length = 228
Score = 25.8 bits (55), Expect = 3.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 18 GLLSVQLDARSFVDG--DLDIQKFSYEDSLLKKGDPNGVHKVQVRDYKGKMQEAEIHSEI 75
GLL QL + D+ + +L+ NGV ++RDYK + QEA + +
Sbjct: 39 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIWKIRDYKRRKQEAVMGKTL 98
Query: 76 RIALKP 81
+ +P
Sbjct: 99 SLYSQP 104
>pdb|1FT5|A Chain A, Crystal Structure Of The Oxidized State Of Cytochrome
C554 From Nitrosomonas Europaea
pdb|1BVB| Heme-Packing Motifs Revealed By The Crystal Structure Of
Cytochrome C554 From Nitrosomonas Europaea
pdb|1FT6|A Chain A, Reduced State Of Cytochrome C554 From Nitrosomonas
Europaea
Length = 211
Score = 25.4 bits (54), Expect = 4.0
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 55 HKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVKK 89
HK Q + +K H++ +LKP VKKE K+
Sbjct: 15 HKAQAQSWKDTA-----HAKAMESLKPNVKKEAKQ 44
>pdb|1AQT| Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli
pdb|1QO1|J Chain J, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
Length = 138
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (60%)
Query: 54 VHKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVKK 89
V K+QV +G++ H+ + A+KPG+ + VK+
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQ 55
>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of
The Subunit Relative To The Beta Subunits Of The
Complex
pdb|1BSN|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1-
Atpsynthase From Escherichia Coli And Orientation Of
The Subunit Relative To The Beta Subunits Of The
Complex
pdb|1FS0|E Chain E, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 138
Score = 25.0 bits (53), Expect = 5.3
Identities = 12/36 (33%), Positives = 22/36 (60%)
Query: 54 VHKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVKK 89
V K+QV +G++ H+ + A+KPG+ + VK+
Sbjct: 20 VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQ 55
>pdb|1M7S|A Chain A, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|B Chain B, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|C Chain C, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
pdb|1M7S|D Chain D, Crystal Structure Analysis Of Catalase Catf Of Pseudomonas
Syringae
Length = 484
Score = 25.0 bits (53), Expect = 5.3
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 2/52 (3%)
Query: 50 DPNGVHKVQVRDYKGKMQEAEIHSEIRIALKPGVKKEVK--KGKIYSAQIND 99
D NGVH ++ + KG++ + H + +K KEV + K YS ND
Sbjct: 189 DGNGVHAYKLVNAKGEVHYVKFHWKSLQGIKNLDPKEVAQVQSKDYSHLTND 240
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.319 0.140 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,121,714
Number of Sequences: 13198
Number of extensions: 47191
Number of successful extensions: 81
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 73
Number of HSP's gapped (non-prelim): 12
length of query: 183
length of database: 2,899,336
effective HSP length: 83
effective length of query: 100
effective length of database: 1,803,902
effective search space: 180390200
effective search space used: 180390200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)