BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645788|ref|NP_207965.1| glucose/galactose
transporter (gluP) [Helicobacter pylori 26695]
         (407 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1F88|A  Chain A, Crystal Structure Of Bovine Rhodopsin >...    30  0.49
pdb|1L9H|A  Chain A, Crystal Structure Of Bovine Rhodopsin A...    30  0.49
pdb|1LN6|A  Chain A, Structure Of Bovine Rhodopsin (Metarhod...    30  0.49

>pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
          Length = 348

 Score = 30.0 bits (66), Expect = 0.49
 Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 5/36 (13%)

Query: 222 HKHFVFGALG-----IFFYVGGEVAIGSFLVLSFEK 252
           H +FVFG  G      F  +GGE+A+ S +VL+ E+
Sbjct: 100 HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIER 135



>pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
           Resolution
 pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
 pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
          Length = 349

 Score = 30.0 bits (66), Expect = 0.49
 Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 5/36 (13%)

Query: 222 HKHFVFGALG-----IFFYVGGEVAIGSFLVLSFEK 252
           H +FVFG  G      F  +GGE+A+ S +VL+ E+
Sbjct: 101 HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIER 136



>pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
 pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
          Length = 348

 Score = 30.0 bits (66), Expect = 0.49
 Identities = 15/36 (41%), Positives = 22/36 (60%), Gaps = 5/36 (13%)

Query: 222 HKHFVFGALG-----IFFYVGGEVAIGSFLVLSFEK 252
           H +FVFG  G      F  +GGE+A+ S +VL+ E+
Sbjct: 100 HGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIER 135



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.145    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,032,252
Number of Sequences: 13198
Number of extensions: 79338
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 3
length of query: 407
length of database: 2,899,336
effective HSP length: 90
effective length of query: 317
effective length of database: 1,711,516
effective search space: 542550572
effective search space used: 542550572
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)