BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645789|ref|NP_207966.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (435 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1L7V|A  Chain A, Bacterial Abc Transporter Involved In B...    32  0.14
pdb|1RVV|1  Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF ...    28  2.0
pdb|1DN1|A  Chain A, Crystal Structure Of The Neuronal-Sec1S...    26  7.7

>pdb|1L7V|A Chain A, Bacterial Abc Transporter Involved In B12 Uptake
 pdb|1L7V|B Chain B, Bacterial Abc Transporter Involved In B12 Uptake
          Length = 326

 Score = 32.0 bits (71), Expect = 0.14
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 10/96 (10%)

Query: 29  YIVPLNALILSQANMPYE-ALLSATAIITILSSVFNGLWANTPIAMSVGLGLSAYFSFGL 87
           +  P   L + Q  +P   A+L   A + I  +V   L+ N P+A    LG+S     GL
Sbjct: 43  WFTPRGELFVWQIRLPRTLAVLLVGAALAISGAVXQALFEN-PLAEPGLLGVSNGAGVGL 101

Query: 88  V------QGLKLPWQSALGIVALSGAIFVILSFTKF 117
           +      QG    W  ALG+ A++GA+ + L   +F
Sbjct: 102 IAAVLLGQGQLPNW--ALGLCAIAGALIITLILLRF 135



>pdb|1RVV|1 Chain 1, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|2 Chain 2, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|3 Chain 3, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|4 Chain 4, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|A Chain A, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|B Chain B, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|C Chain C, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|D Chain D, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|E Chain E, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|F Chain F, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|G Chain G, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|H Chain H, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|I Chain I, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|J Chain J, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|K Chain K, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|L Chain L, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|M Chain M, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|N Chain N, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|O Chain O, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|P Chain P, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Q Chain Q, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|R Chain R, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|S Chain S, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|T Chain T, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|U Chain U, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|V Chain V, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|W Chain W, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|X Chain X, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Y Chain Y, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
 pdb|1RVV|Z Chain Z, SynthaseRIBOFLAVIN SYNTHASE COMPLEX OF BACILLUS SUBTILIS
          Length = 154

 Score = 28.1 bits (61), Expect = 2.0
 Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 282 KELEKTLEADAVASLGSAVVGVSTTTAFI--ESASGVEEGGR-TGLTAVF 328
           K++ +T + DA+ +LG+ + G +T   ++  E+A G+ +    TG+  +F
Sbjct: 64  KKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIF 113



>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
          Length = 594

 Score = 26.2 bits (56), Expect = 7.7
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 9   HNTNIATEFRAGLTTFITMIYIVPLN----ALILSQANMPYEALLSATAIIT 56
           H      E+R+G    I ++  V LN    A  ++QAN  +E L+ +T I+T
Sbjct: 523 HKNKAPGEYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILT 574



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.328    0.143    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,152,383
Number of Sequences: 13198
Number of extensions: 81670
Number of successful extensions: 290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 3
length of query: 435
length of database: 2,899,336
effective HSP length: 91
effective length of query: 344
effective length of database: 1,698,318
effective search space: 584221392
effective search space used: 584221392
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)