BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645790|ref|NP_207967.1| hypothetical protein
[Helicobacter pylori 26695]
         (34 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1G8F|A  Chain A, Atp Sulfurylase From S. Cerevisiae >gi|...    24  3.3
pdb|1JEC|A  Chain A, Crystal Structure Of Atp Sulfurylase In...    24  3.3

>pdb|1G8F|A Chain A, Atp Sulfurylase From S. Cerevisiae
 pdb|1G8G|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Binary Product
           Complex With Aps
 pdb|1G8G|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Binary Product
           Complex With Aps
 pdb|1G8H|A Chain A, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
           Complex With Aps And Ppi
 pdb|1G8H|B Chain B, Atp Sulfurylase From S. Cerevisiae: The Ternary Product
           Complex With Aps And Ppi
          Length = 511

 Score = 24.3 bits (51), Expect = 3.3
 Identities = 12/32 (37%), Positives = 16/32 (49%)

Query: 1   MLSPFLIFHGKLLFRIYPHNRSYGAFVLQQSF 32
           +LS FL F G   ++I+ HN       L Q F
Sbjct: 415 LLSTFLQFGGGRYYKIFEHNNKTELLSLIQDF 446



>pdb|1JEC|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
           Thiosulfate
 pdb|1JEE|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With
           Chlorate
 pdb|1JEE|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With
           Chlorate
 pdb|1JED|A Chain A, Crystal Structure Of Atp Sulfurylase In Complex With Adp
 pdb|1JED|B Chain B, Crystal Structure Of Atp Sulfurylase In Complex With Adp
          Length = 510

 Score = 24.3 bits (51), Expect = 3.3
 Identities = 12/32 (37%), Positives = 16/32 (49%)

Query: 1   MLSPFLIFHGKLLFRIYPHNRSYGAFVLQQSF 32
           +LS FL F G   ++I+ HN       L Q F
Sbjct: 414 LLSTFLQFGGGRYYKIFEHNNKTELLSLIQDF 445



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.338    0.152    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,681
Number of Sequences: 13198
Number of extensions: 2508
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 34
length of database: 2,899,336
effective HSP length: 10
effective length of query: 24
effective length of database: 2,767,356
effective search space: 66416544
effective search space used: 66416544
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 47 (22.7 bits)