BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645792|ref|NP_207969.1| purine-nucleoside
phosphorylase (deoD) [Helicobacter pylori 26695]
(233 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase >gi|163... 266 2e-72
pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E.... 266 2e-72
pdb|1JE1|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phospho... 103 2e-23
pdb|1K3F|A Chain A, Uridine Phosphorylase From E. Coli, Ref... 66 3e-12
pdb|1LX7|A Chain A, Structure Of E. Coli Uridine Phosphoryl... 63 3e-11
pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY ... 40 2e-04
pdb|1IDJ|A Chain A, Pectin Lyase A >gi|2624854|pdb|1IDJ|B C... 27 1.6
pdb|1IDK| Pectin Lyase A 27 1.6
>pdb|1ECP|A Chain A, Purine Nucleoside Phosphorylase
pdb|1ECP|B Chain B, Purine Nucleoside Phosphorylase
pdb|1ECP|C Chain C, Purine Nucleoside Phosphorylase
pdb|1ECP|D Chain D, Purine Nucleoside Phosphorylase
pdb|1ECP|E Chain E, Purine Nucleoside Phosphorylase
pdb|1ECP|F Chain F, Purine Nucleoside Phosphorylase
pdb|1A69|A Chain A, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|C Chain C, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
pdb|1A69|B Chain B, Purine Nucleoside Phosphorylase In Complex With Formycin B
And Sulphate (Phosphate)
Length = 238
Score = 266 bits (679), Expect = 2e-72
Identities = 127/229 (55%), Positives = 168/229 (72%)
Query: 2 TPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGRGISLMG 61
TPHINA++GDF L+ GDPLR YIA+ FL+DA+E+ NVR MLGF+G YKGR IS+MG
Sbjct: 2 TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMG 61
Query: 62 HGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFL 121
HGMGI SC+IY ELI + VK+++R+G+CGA+ P V L+D+++ GA TDSK NR+RF
Sbjct: 62 HGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFK 121
Query: 122 NHDLSATPDFELSLRAYQTAKRLGIDLKVGNVFSSDFFYSFETHAFDLMAKYNHLAIEME 181
+HD +A DF++ A AK LGID +VGN+FS+D FYS + FD+M KY L +EME
Sbjct: 122 DHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEME 181
Query: 182 AAGLYATAMELNAKALCLCSVSDHLITKEALSPKERVESFDNMIILALE 230
AAG+Y A E AKAL +C+VSDH+ T E + ER +F++MI +ALE
Sbjct: 182 AAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALE 230
>pdb|1K9S|A Chain A, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|C Chain C, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|B Chain B, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|E Chain E, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|D Chain D, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
pdb|1K9S|F Chain F, Purine Nucleoside Phosphorylase From E. Coli In Complex
With Formycin A Derivative And Phosphate
Length = 237
Score = 266 bits (679), Expect = 2e-72
Identities = 127/229 (55%), Positives = 168/229 (72%)
Query: 2 TPHINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGRGISLMG 61
TPHINA++GDF L+ GDPLR YIA+ FL+DA+E+ NVR MLGF+G YKGR IS+MG
Sbjct: 2 TPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMG 61
Query: 62 HGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFL 121
HGMGI SC+IY ELI + VK+++R+G+CGA+ P V L+D+++ GA TDSK NR+RF
Sbjct: 62 HGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSKVNRIRFK 121
Query: 122 NHDLSATPDFELSLRAYQTAKRLGIDLKVGNVFSSDFFYSFETHAFDLMAKYNHLAIEME 181
+HD +A DF++ A AK LGID +VGN+FS+D FYS + FD+M KY L +EME
Sbjct: 122 DHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEME 181
Query: 182 AAGLYATAMELNAKALCLCSVSDHLITKEALSPKERVESFDNMIILALE 230
AAG+Y A E AKAL +C+VSDH+ T E + ER +F++MI +ALE
Sbjct: 182 AAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALE 230
>pdb|1JE1|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDV|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|F Chain F, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDS|C Chain C, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JE1|F Chain F, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDU|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JPV|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JE1|A Chain A, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JPV|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JPV|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With So4
pdb|1JE1|B Chain B, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JE1|D Chain D, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDT|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDT|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDU|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JDS|F Chain F, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JE1|E Chain E, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Guanosine And Sulfate
pdb|1JDU|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JP7|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JP7|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JE0|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JP7|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase
pdb|1JDV|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|D Chain D, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JDV|E Chain E, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Adenosine And Sulfate Ion
pdb|1JE0|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JE0|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Phosphate And Tris Molecule
pdb|1JDS|A Chain A, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|B Chain B, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|D Chain D, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDS|E Chain E, 5'-Deoxy-5'-Methylthioadenosine Phosphorylase Complex With
Phosphate (Space Group P21)
pdb|1JDT|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase Complexed With Mta And Sulfate Ion
pdb|1JDZ|A Chain A, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
pdb|1JDZ|B Chain B, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
pdb|1JDZ|C Chain C, Crystal Structure Of 5'-Deoxy-5'-Methylthioadenosine
Phosphorylase With Formycin B And Sulfate Ion
Length = 236
Score = 103 bits (257), Expect = 2e-23
Identities = 73/217 (33%), Positives = 112/217 (50%), Gaps = 10/217 (4%)
Query: 4 HINAKIGDFYPQCLLCGDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGRGISLMGHG 63
HI AK G+ + L+ GDP R ++ LQ+ K R L ++GKY G +S+ HG
Sbjct: 5 HILAKKGEVAERVLVVGDPGRARLLST-LLQNPKLTNENRGFLVYTGKYNGETVSIATHG 63
Query: 64 MGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFL-- 121
+G S I + EL +R GT GA+ P + L + I+ TGAS + ++L
Sbjct: 64 IGGPSIAIVLEELAML-GANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRD 122
Query: 122 NHDLSATPDFELSLRAYQTAKRLGIDLKVGNVFSSDFFYSFETHAFDLMAKYNHLAIEME 181
N +++TPDFEL+ + + + + VGNVFSSD FY+ + + ++A+EME
Sbjct: 123 NACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEME 182
Query: 182 AAGLYATAMELNAKALCLCSVSDHL------ITKEAL 212
A L+ + K+ + VSD+L ITKE L
Sbjct: 183 CATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEEL 219
>pdb|1K3F|A Chain A, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|B Chain B, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|C Chain C, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|D Chain D, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|E Chain E, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|F Chain F, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
Length = 253
Score = 66.2 bits (160), Expect = 3e-12
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 8/186 (4%)
Query: 20 GDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGRGISLMGHGMGIASCTIYVTELIKT 79
GDP RV IA + K + + R + + G+ + + G+G S +I V EL +
Sbjct: 26 GDPDRVEKIAALMDKPVK-LASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQL 84
Query: 80 YQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQ 139
++ LRIGT GAI P + + D+++ T AS + F + A DFE + +
Sbjct: 85 -GIRTFLRIGTTGAIQPHINVGDVLVTT-ASVRLDGASLHFAPLEFPAVADFECTTALVE 142
Query: 140 TAKRLGIDLKVGNVFSSDFFY----SFETHAFDLMAKYNHLAIEMEAAGLYATAMELNAK 195
AK +G VG SSD FY ++T++ ++ + E +A G+ ME +A
Sbjct: 143 AAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEME-SAT 201
Query: 196 ALCLCS 201
L +C+
Sbjct: 202 LLTMCA 207
>pdb|1LX7|A Chain A, Structure Of E. Coli Uridine Phosphorylase At 2.0a
pdb|1LX7|B Chain B, Structure Of E. Coli Uridine Phosphorylase At 2.0a
Length = 253
Score = 63.2 bits (152), Expect = 3e-11
Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 8/186 (4%)
Query: 20 GDPLRVSYIAKKFLQDAKEITNVRNMLGFSGKYKGRGISLMGHGMGIASCTIYVTELIKT 79
GDP RV IA + K + + R + + G+ + + G+G S +I V EL +
Sbjct: 26 GDPDRVEKIAALXDKPVK-LASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQL 84
Query: 80 YQVKELLRIGTCGAISPKVGLKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAYQ 139
++ LRIGT GAI P + + D+++ T AS + F + A DFE + +
Sbjct: 85 -GIRTFLRIGTTGAIQPHINVGDVLVTT-ASVRLDGASLHFAPLEFPAVADFECTTALVE 142
Query: 140 TAKRLGIDLKVGNVFSSDFFY----SFETHAFDLMAKYNHLAIEMEAAGLYATAMELNAK 195
AK +G VG SSD FY ++T++ ++ + E +A G+ E +A
Sbjct: 143 AAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSXEEWQAXGVXNYEXE-SAT 201
Query: 196 ALCLCS 201
L C+
Sbjct: 202 LLTXCA 207
>pdb|1JYS|A Chain A, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
pdb|1JYS|B Chain B, Crystal Structure Of E. Coli MtaADOHCY NUCLEOSIDASE
Length = 242
Score = 40.4 bits (93), Expect = 2e-04
Identities = 40/197 (20%), Positives = 84/197 (42%), Gaps = 22/197 (11%)
Query: 48 FSGKYKGRGISLMGHGMGIASCTIYVTELIKTYQVKELLRIGTCGAISPKVGLKDIIMAT 107
++G+ G ++L+ G+G + + T L++ + ++ G+ G ++P + + DI+++
Sbjct: 44 YTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSD 103
Query: 108 GAS-TDSKTNRVRFLNHDLSATP-----DFELSLRAYQTAKRLGIDLKVGNVFSSDFFYS 161
A D+ + L P D +L A L ++ G + S D F +
Sbjct: 104 EARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFIN 163
Query: 162 FETHAFDLMAKYNH-----LAIEMEAAGLYATAMELNAKALCLCSVSDHLITKEALSPKE 216
+AK H +A+EMEA + N + + ++SD ++ ++
Sbjct: 164 GSVG----LAKIRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISD-------VADQQ 212
Query: 217 RVESFDNMIILALEMMS 233
SFD + +A + S
Sbjct: 213 SHLSFDEFLAVAAKQSS 229
>pdb|1IDJ|A Chain A, Pectin Lyase A
pdb|1IDJ|B Chain B, Pectin Lyase A
Length = 359
Score = 27.3 bits (59), Expect = 1.6
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 47 GFSGKYKGRGISLMGHGMGIASCTIYVTELIKTY-QVKELLRIGTCGAI------SPKVG 99
G SG KG+G+ ++ I I VT++ Y + + + C + + ++G
Sbjct: 116 GSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIG 175
Query: 100 LKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAY 138
+ ++ T A NRV N+ + D+ + Y
Sbjct: 176 RQHYVLGTSAD-----NRVSLTNNYIDGVSDYSATCDGY 209
>pdb|1IDK| Pectin Lyase A
Length = 359
Score = 27.3 bits (59), Expect = 1.6
Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 47 GFSGKYKGRGISLMGHGMGIASCTIYVTELIKTY-QVKELLRIGTCGAI------SPKVG 99
G SG KG+G+ ++ I I VT++ Y + + + C + + ++G
Sbjct: 116 GSSGAIKGKGLRIVSGAENIIIQNIAVTDINPKYVWGGDAITLDDCDLVWIDHVTTARIG 175
Query: 100 LKDIIMATGASTDSKTNRVRFLNHDLSATPDFELSLRAY 138
+ ++ T A NRV N+ + D+ + Y
Sbjct: 176 RQHYVLGTSAD-----NRVSLTNNYIDGVSDYSATCDGY 209
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.322 0.137 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,251,606
Number of Sequences: 13198
Number of extensions: 46648
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 8
length of query: 233
length of database: 2,899,336
effective HSP length: 85
effective length of query: 148
effective length of database: 1,777,506
effective search space: 263070888
effective search space used: 263070888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)