BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645796|ref|NP_207973.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(253 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complex... 29 0.46
pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex W... 27 3.0
pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amyla... 27 3.0
pdb|1OEN| Phosphoenolpyruvate Carboxykinase 26 5.1
pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Co... 26 5.1
pdb|1AYL| Phosphoenolpyruvate Carboxykinase 26 5.1
pdb|7TAA| Family 13 Alpha Amylase In Complex With Acarbos... 25 6.6
pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochl... 25 6.6
pdb|1CCW|A Chain A, Structure Of The Coenzyme B12 Dependent... 25 6.6
pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-K... 25 8.6
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 29.3 bits (64), Expect = 0.46
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 27 DKILLGLSGGKDSIMLACILAR 48
DK++LGLSGG DS + A +L R
Sbjct: 228 DKVILGLSGGVDSSVTAMLLHR 249
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 26.6 bits (57), Expect = 3.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 31 LGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGI 84
LG++G I L I H D+ + H+G E LK L C E+GI
Sbjct: 188 LGITG----IYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGI 237
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 26.6 bits (57), Expect = 3.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 31 LGLSGGKDSIMLACILARMQKHAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGI 84
LG++G I L I H D+ + H+G E LK L C E+GI
Sbjct: 188 LGITG----IYLTPIFRAPSNHKYDTADYFEIDPHFGDKETLKTLVKRCHEKGI 237
>pdb|1OEN| Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 7/49 (14%)
Query: 159 PIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDK 207
PIY +N +++P+ K A+ + F+T+ V P P + T+D+
Sbjct: 337 PIYHIDN---IVKPVSKAGHATKVIFLTADAFGVLP----PVSRLTADQ 378
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1AQ2| Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 7/49 (14%)
Query: 159 PIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDK 207
PIY +N +++P+ K A+ + F+T+ V P P + T+D+
Sbjct: 337 PIYHIDN---IVKPVSKAGHATKVIFLTADAFGVLP----PVSRLTADQ 378
>pdb|1AYL| Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 25.8 bits (55), Expect = 5.1
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 7/49 (14%)
Query: 159 PIYRAENGLLVIRPLIKVREASSIHFVTSQNIPVAPDCNCPAKQPTSDK 207
PIY +N +++P+ K A+ + F+T+ V P P + T+D+
Sbjct: 337 PIYHIDN---IVKPVSKAGHATKVIFLTADAFGVLP----PVSRLTADQ 378
>pdb|7TAA| Family 13 Alpha Amylase In Complex With Acarbose
pdb|6TAA| Alpha Amylase (Taka Amylase) (E.C.3.2.1.1)
Length = 478
Score = 25.4 bits (54), Expect = 6.6
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 52 HAPFKFDFKAVTVHYGLGEDLKWLSDLCQEQGI 84
H ++ D ++ +YG +DLK LS E+G+
Sbjct: 80 HGYWQQDIYSLNENYGTADDLKALSSALHERGM 112
>pdb|1I9C|A Chain A, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
pdb|1I9C|C Chain C, Glutamate Mutase From Clostridium Cochlearium: Complex
With Adenosylcobalamin And Substrate
Length = 137
Score = 25.4 bits (54), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 56 KFDFKAVTVHYGLGE-DLKWLSDLCQEQGIEHEIIY 90
K D V+ YG GE D K L C E G+E ++Y
Sbjct: 54 KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY 89
>pdb|1CCW|A Chain A, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CCW|C Chain C, Structure Of The Coenzyme B12 Dependent Enzyme Glutamate
Mutase From Clostridium Cochlearium
pdb|1CB7|A Chain A, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
pdb|1CB7|C Chain C, Glutamate Mutase From Clostridium Cochlearium
Reconstituted With Methyl-Cobalamin
Length = 137
Score = 25.4 bits (54), Expect = 6.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 56 KFDFKAVTVHYGLGE-DLKWLSDLCQEQGIEHEIIY 90
K D V+ YG GE D K L C E G+E ++Y
Sbjct: 54 KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLY 89
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 25.0 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 4 EISKKVLH---IVGKTNATYKLIEEGDKILLGLSGGKDSIMLAC 44
++ + LH I+G+ + KL G +L+ GG ++ LAC
Sbjct: 43 DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLAC 86
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.136 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,426,212
Number of Sequences: 13198
Number of extensions: 56578
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 10
length of query: 253
length of database: 2,899,336
effective HSP length: 86
effective length of query: 167
effective length of database: 1,764,308
effective search space: 294639436
effective search space used: 294639436
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)