BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644749|ref|NP_206919.1| hypothetical protein
[Helicobacter pylori 26695]
(461 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 55 2e-08
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 47 6e-06
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 47 6e-06
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 42 1e-04
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 42 2e-04
pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecti... 34 0.040
pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 33 0.052
pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp ... 33 0.052
pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radic... 33 0.088
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 33 0.088
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 32 0.12
pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment 32 0.20
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 31 0.34
pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin... 30 0.44
pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin... 30 0.44
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 30 0.57
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 30 0.57
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 30 0.57
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 30 0.57
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 30 0.57
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex >gi|1598838... 29 1.3
pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycini... 28 1.7
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 28 2.2
pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed Wit... 28 2.2
pdb|1BN5| Human Methionine Aminopeptidase 2 >gi|5821858|p... 28 2.2
pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturas... 28 2.2
pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthe... 28 2.8
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 2.8
pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad 28 2.8
pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 I... 27 3.7
pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Tran... 27 4.8
pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Tran... 27 4.8
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 27 6.3
pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New F... 26 8.3
pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-... 26 8.3
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 54.7 bits (130), Expect = 2e-08
Identities = 72/303 (23%), Positives = 138/303 (44%), Gaps = 44/303 (14%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQ--EKQKTEQEKQKTEQE------- 148
+ ++E+ +E + ++R K+ EL++ +QK Q E++ QEK + E E
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 149 --------KQKTSNIETNNQIKVEQKQQKTEQ---EKQKTEQ-----EKQKTEQE--KQK 190
KQ+ I + ++E+++++++Q EK+K +Q E+Q E+E +QK
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 191 TEQEKQ----KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT-----EQEKQKT-EQE 240
+ EK K +E + I +Q + T++ K E+ T E+EK K +
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKL 1033
Query: 241 KQKTSNIETNNQIKVEQEQ---QKTEQEKQKTNNTQKDL-VKYAEQNCQ--ENHNQFFIK 294
K K ++ + ++++++E+ Q+ E+ K+K DL + AE Q E Q K
Sbjct: 1034 KNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKK 1093
Query: 295 KLGIKGGIA-IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKEL 353
+ ++ +A +E E K K + L + +KA++ L +EL
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEEL 1153
Query: 354 EFL 356
E L
Sbjct: 1154 EAL 1156
Score = 52.8 bits (125), Expect = 8e-08
Identities = 69/311 (22%), Positives = 137/311 (43%), Gaps = 28/311 (9%)
Query: 125 EQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 184
E+E Q ++E Q+T++ +QK E E ++ +E + E+K E+ + +TE +
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAELKE---LEQKHTQLCEEKNLLQEKLQAETELYAE-A 911
Query: 185 EQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQ---EKQKTEQ-----EKQKTEQE--K 234
E+ + + +KQ+ I + ++E+++++++Q EK+K +Q E+Q E+E +
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 235 QKTEQEK----QKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ 290
QK + EK K +E + I +Q + T++ K AE +E +
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE---EEEKAK 1028
Query: 291 FFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG---SKAQEFIA 347
K + E+E K + ++ I+ K S H Q ++ E A
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 348 YLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKML 407
L K+ E L + + + + + EL+ + E+ + E R+KA+
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK-AARNKAEK--- 1144
Query: 408 EMRDLKPDPQA 418
+ RDL + +A
Sbjct: 1145 QKRDLSEELEA 1155
Score = 45.8 bits (107), Expect = 1e-05
Identities = 27/117 (23%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 166 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 225
K + E+E Q ++E Q+T++ +QK E E ++ +E + E+K E+ + +TE
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKE---LEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 226 EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQ 282
+ E+ + + +KQ+ I + ++E+E+++++Q + + Q+ ++ EQ
Sbjct: 908 YAE-AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Score = 37.7 bits (86), Expect = 0.003
Identities = 38/217 (17%), Positives = 98/217 (44%), Gaps = 22/217 (10%)
Query: 157 TNNQIKVEQKQQKTEQEK---QKTEQEKQKTEQEKQKTEQEK---QKTSNIETNNQIKVE 210
T + +++ K ++ ++ K QK E E ++ EQ+ + +EK Q+ ET + E
Sbjct: 853 TRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE 912
Query: 211 QKQQKTEQEKQKTEQ---------EKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK 261
+ + + +KQ+ E+ E+++ ++ + E++K + ++ Q+ +E++
Sbjct: 913 EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL---EEEEA 969
Query: 262 TEQEKQKTNNTQKDLVKYAEQN--CQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTN 319
Q+ Q T +K E + E+ N K+ + ++ + N
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
Query: 320 QTPIQPKH--LPNSKQPHSQRGSKAQEFIAYLQKELE 354
T ++ KH + + + ++ K+++ + ++++LE
Sbjct: 1030 LTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Score = 34.3 bits (77), Expect = 0.030
Identities = 24/134 (17%), Positives = 61/134 (44%), Gaps = 2/134 (1%)
Query: 96 DDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNI 155
+++S++E+ + +++ E ++ EL+ + + + + K E+E Q + ++
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110
Query: 156 ETNNQIKVEQKQQKTEQEKQKTEQEK-QKTEQEKQKTE-QEKQKTSNIETNNQIKVEQKQ 213
+ N K+ + + ++ E EK + + EKQK + E+ + E + + Q
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170
Query: 214 QKTEQEKQKTEQEK 227
Q+ K + +K
Sbjct: 1171 QELRGSDYKDDDDK 1184
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 46.6 bits (109), Expect = 6e-06
Identities = 58/266 (21%), Positives = 111/266 (40%), Gaps = 42/266 (15%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D KK++ + + ENA DRA ++ E +K+ E ++ E E
Sbjct: 2 DAIKKKMQMLKLDKENALDRA-----------EQAEADKKAAEDRSKQLEDEL------- 43
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET---NNQIKVEQKQ 213
+ +++K + TE E K E K QEK + ++K + + N +I++ +++
Sbjct: 44 ----VSLQKKLKGTEDELDKYS-EALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEE 98
Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ 273
QE+ T +K + E EK E E+ +KV + + + ++EK + Q
Sbjct: 99 LDRAQERLATALQKLE-EAEKAADESER----------GMKVIESRAQKDEEKMEIQEIQ 147
Query: 274 KDLVKYAEQNCQENHNQFFIKKLGIKGGI-AIEVEAECKTPKPAKTNQ----TPIQPKHL 328
K+ ++ + + K + I+ + E AE K A+ + K L
Sbjct: 148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL 207
Query: 329 PNSKQPHSQRGSKAQEFIAYLQKELE 354
+ +SQ+ K +E I L +L+
Sbjct: 208 EAQAEKYSQKEDKYEEEIKVLSDKLK 233
Score = 43.9 bits (102), Expect = 4e-05
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 5/180 (2%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D++++ +A ++ E A A++S E+ + E QK E++ + E + ++ +I
Sbjct: 100 DRAQERLATALQKLEEAEKAADES----ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 216
+ K E+ +K + E+ +++ E + K + +++ + TNN +E + +K
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV-TNNLKSLEAQAEKY 214
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDL 276
Q++ K E+E + + ++ E + T + ++ + + +K K ++L
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274
Score = 40.8 bits (94), Expect = 3e-04
Identities = 55/298 (18%), Positives = 129/298 (42%), Gaps = 37/298 (12%)
Query: 163 VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
+++K Q + +K+ ++ E +K+ E ++ + + +++K + TE E K
Sbjct: 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLED----ELVSLQKKLKGTEDELDK 59
Query: 223 TEQEKQKTEQEKQKTEQEKQKTSNIET---NNQIKVEQEQQKTEQEK-----QKTNNTQK 274
E K QEK + ++K + + N +I++ +E+ QE+ QK +K
Sbjct: 60 YS-EALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEK 118
Query: 275 DL------VKYAEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHL 328
+K E Q++ + I+++ +K I +A+ K + A+ + +
Sbjct: 119 AADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR------KLVII 172
Query: 329 PNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVT 388
+ + +R ++ A L++E++ + + K++ Q Y Y E + KV
Sbjct: 173 ESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE----EIKVL 228
Query: 389 EEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKI-FADVNKEIEAVAN 445
+ KE ++ +A+ E K + + + L+ QK+ + +++E++ N
Sbjct: 229 SDKLKE-----AETRAEFAERSVTKLEKS--IDDLEDELYAQKLKYKAISEELDHALN 279
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 46.6 bits (109), Expect = 6e-06
Identities = 58/266 (21%), Positives = 112/266 (41%), Gaps = 42/266 (15%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D KK++ + + ENA DRA+++ E +K+ E ++ E E
Sbjct: 2 DAIKKKMQMLKLDKENALDRADEA-----------EADKKAAEDRSKQLEDEL------- 43
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET---NNQIKVEQKQ 213
+ +++K + TE E K E K QEK + ++K + + N +I++ +++
Sbjct: 44 ----VSLQKKLKATEDELDKYS-EALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEE 98
Query: 214 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQ 273
QE+ T +K + E EK E E+ +KV + + + ++EK + Q
Sbjct: 99 LDRAQERLATALQKLE-EAEKAADESER----------GMKVIESRAQKDEEKMEIQEIQ 147
Query: 274 KDLVKYAEQNCQENHNQFFIKKLGIKGGI-AIEVEAECKTPKPAKTNQ----TPIQPKHL 328
K+ ++ + + K + I+ + E AE K A+ + K L
Sbjct: 148 LKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSL 207
Query: 329 PNSKQPHSQRGSKAQEFIAYLQKELE 354
+ +SQ+ K +E I L +L+
Sbjct: 208 EAQAEKYSQKEDKYEEEIKVLSDKLK 233
Score = 43.9 bits (102), Expect = 4e-05
Identities = 33/180 (18%), Positives = 84/180 (46%), Gaps = 5/180 (2%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D++++ +A ++ E A A++S E+ + E QK E++ + E + ++ +I
Sbjct: 100 DRAQERLATALQKLEEAEKAADES----ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKT 216
+ K E+ +K + E+ +++ E + K + +++ + TNN +E + +K
Sbjct: 156 EDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTV-TNNLKSLEAQAEKY 214
Query: 217 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDL 276
Q++ K E+E + + ++ E + T + ++ + + +K K ++L
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEL 274
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 42.0 bits (97), Expect = 1e-04
Identities = 42/151 (27%), Positives = 64/151 (41%), Gaps = 25/151 (16%)
Query: 121 GIELEQEQQKTEQEKQKTE--QEKQKTEQEKQKTSNIETNNQIK--VEQKQ--------- 167
GI +EQ TEQ + TE +EKQ E + K S+ IK +E K+
Sbjct: 97 GIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXR 156
Query: 168 ---QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTE 224
K QE+ K E QE +T + T + +QK ++ + E +
Sbjct: 157 STSDKAAQERLKKEINNSHI--------QEVVQTIKLLTEKTARYQQKLEEKQAENLRAI 208
Query: 225 QEKQ-KTEQEKQKTEQEKQKTSNIETNNQIK 254
QEK+ + +QE +EK KT +E +K
Sbjct: 209 QEKEGQLQQEAVAEYEEKLKTLTVEVQEXVK 239
Score = 40.0 bits (92), Expect = 6e-04
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%)
Query: 100 KKEVAETQ--KEAENARDRANKSGIE---LEQEQQKTEQEKQKTEQEKQKTE------QE 148
+K++AE + KE+ + + K +E L++ Q K QE+ K E QE
Sbjct: 119 EKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKKEINNSHIQE 178
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ-KTEQEKQKTEQEKQKTSNIETNNQI 207
+T + T + +QK ++ + E + QEK+ + +QE +EK KT +E +
Sbjct: 179 VVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEXV 238
Query: 208 KVEQKQ 213
K K+
Sbjct: 239 KNYXKE 244
Score = 33.1 bits (74), Expect = 0.068
Identities = 39/184 (21%), Positives = 74/184 (40%), Gaps = 17/184 (9%)
Query: 98 QSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIET 157
+ +KE+ E +++ R+ + L E + + K++ E E E
Sbjct: 36 KQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKERLEXELIHLGE-EY 94
Query: 158 NNQIKVEQKQQKTEQEKQKTE--QEKQKTEQEKQKTEQE---KQKTSNIETNN----QIK 208
++ I+ ++Q TEQ + TE +EKQ E + K E K +E Q+
Sbjct: 95 HDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVX 154
Query: 209 VEQKQQKTEQEKQKTEQEKQKTEQEKQ-------KTEQEKQKTSNIETNNQIKVEQEQQK 261
K QE+ K E ++ Q KT + +QK + N +++++ +
Sbjct: 155 XRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQ 214
Query: 262 TEQE 265
+QE
Sbjct: 215 LQQE 218
Score = 33.1 bits (74), Expect = 0.068
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQE----KQKTEQEK-QKTEQEKQKTSN 154
+KE T++ A+ K EL+ ++ +E K+K E ++ + + + TS+
Sbjct: 101 RKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSD 160
Query: 155 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
++K E ++ Q + +KT + +QK E++ + N +++K+
Sbjct: 161 KAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEK-------QAENLRAIQEKEG 213
Query: 215 KTEQEKQKTEQEKQKT 230
+ +QE +EK KT
Sbjct: 214 QLQQEAVAEYEEKLKT 229
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 41.6 bits (96), Expect = 2e-04
Identities = 31/144 (21%), Positives = 74/144 (50%), Gaps = 5/144 (3%)
Query: 136 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ-KTEQE 194
QK + K+K +E +K E Q ++ K+ T+ Q ++ TE+EK+ + E+
Sbjct: 438 QKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQT---DQTLTEKEKEIEVERV 494
Query: 195 KQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIK 254
K +++ ++++K ++ ++K+++ QE K EK + ++ Q E +K
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDR-VQLLKEQERTLALK 553
Query: 255 VEQEQQKTEQEKQKTNNTQKDLVK 278
+++++Q ++ QK + K+ ++
Sbjct: 554 LQEQEQLLKEGFQKESRIMKNEIQ 577
Score = 38.1 bits (87), Expect = 0.002
Identities = 33/135 (24%), Positives = 69/135 (50%), Gaps = 9/135 (6%)
Query: 119 KSGIELEQEQQKTEQEKQKTEQEKQKTEQ---EKQKTSNIETNNQIKVEQKQQKTEQEKQ 175
+ GI+ E+ Q + K+ +T+Q EK+K +E ++K E Q + +
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVE---RVKAESAQASAKMLHE 508
Query: 176 KTEQEKQKTEQ-EKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEK 234
+ +Q EQ E+ E KQ T +E N+++++ ++Q++T K + EQE+ E +
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKME-NDRVQLLKEQERTLALKLQ-EQEQLLKEGFQ 566
Query: 235 QKTEQEKQKTSNIET 249
+++ K + +++T
Sbjct: 567 KESRIMKNEIQDLQT 581
Score = 35.8 bits (81), Expect = 0.010
Identities = 30/109 (27%), Positives = 60/109 (54%), Gaps = 7/109 (6%)
Query: 98 QSKKEVAETQKEAENAR---DRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSN 154
Q+ + + E +KE E R + A S L + Q+K EQ ++ E+ Q E KQ T
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQ--EHLKQLTEK 534
Query: 155 IETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
+E N+++++ ++Q++T K + EQE+ E ++++ K + +++T
Sbjct: 535 ME-NDRVQLLKEQERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQT 581
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 33.9 bits (76), Expect = 0.040
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 144 KTEQEKQKTSNIETNNQ-IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN-I 201
K EQ + + TN Q +K+ K + +++K+K ++ ++ E+E + T EK K +N +
Sbjct: 39 KAEQLNINSQSKYTNLQNLKITDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFL 98
Query: 202 ETNNQIKVEQKQ 213
+ N IK K+
Sbjct: 99 DNKNDIKTNYKE 110
Score = 32.3 bits (72), Expect = 0.12
Identities = 20/72 (27%), Positives = 40/72 (54%), Gaps = 2/72 (2%)
Query: 190 KTEQEKQKTSNIETNNQ-IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN-I 247
K EQ + + TN Q +K+ K + +++K+K ++ ++ E+E + T EK K +N +
Sbjct: 39 KAEQLNINSQSKYTNLQNLKITDKVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFL 98
Query: 248 ETNNQIKVEQEQ 259
+ N IK ++
Sbjct: 99 DNKNDIKTNYKE 110
Score = 27.3 bits (59), Expect = 3.7
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 82 VTTITAMLMNVCFADDQSKKEVAETQKEAENARDR-ANKSGIELEQEQQKTEQEKQKTEQ 140
V T T +L V F+ EV + ++ N++ + N +++ + + +++K+K ++
Sbjct: 17 VVTKTVLLSTV-FSISLLNNEVIKAEQLNINSQSKYTNLQNLKITDKVEDFKEDKEKAKE 75
Query: 141 ---EKQK----TEQEKQKTSN-IETNNQIKVEQKQ 167
EK+K T EK K +N ++ N IK K+
Sbjct: 76 WGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKE 110
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
Length = 625
Score = 33.5 bits (75), Expect = 0.052
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 18 VKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSNWICGNVKTADDYLKTHPNSWF 76
+KT ++ +F NV + G +WE I + + + ++W + D HPNS F
Sbjct: 351 IKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRF 409
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 33.5 bits (75), Expect = 0.052
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 18 VKTAKEKKVFKNVGMSIMGIAFWEAIKDSIKKQIKKSNWICGNVKTADDYLKTHPNSWF 76
+KT ++ +F NV + G +WE I + + + ++W + D HPNS F
Sbjct: 351 IKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRF 409
>pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radical Enzymes
Length = 67
Score = 32.7 bits (73), Expect = 0.088
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 205 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI-KVEQEQQKTE 263
+++K +++ K +EK K + E+ K+K E+ K+K + ++ KVE+E +K E
Sbjct: 2 SRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLE 61
Query: 264 QEKQK 268
+E +K
Sbjct: 62 EEIKK 66
Score = 31.2 bits (69), Expect = 0.26
Identities = 18/65 (27%), Positives = 38/65 (57%), Gaps = 1/65 (1%)
Query: 159 NQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQI-KVEQKQQKTE 217
+++K +++ K +EK K + E+ K+K E+ K+K + ++ KVE++ +K E
Sbjct: 2 SRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLE 61
Query: 218 QEKQK 222
+E +K
Sbjct: 62 EEIKK 66
Score = 27.7 bits (60), Expect = 2.8
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query: 120 SGIELEQEQQKTEQEKQKT-------EQEKQKTEQEKQKTSNIETNNQI-KVEQKQQKTE 171
S ++ +E+ K +EK K E+ K+K E+ K+K + ++ KVE++ +K E
Sbjct: 2 SRVKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLE 61
Query: 172 QEKQK 176
+E +K
Sbjct: 62 EEIKK 66
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 32.7 bits (73), Expect = 0.088
Identities = 18/68 (26%), Positives = 34/68 (49%), Gaps = 15/68 (22%)
Query: 116 RANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ 175
R IE++Q + + +EK + + E+ E EK +K++ E+EK+
Sbjct: 294 RRKPDTIEVQQMKAQAREEKHQKQMERAMLENEK---------------KKREMAEKEKE 338
Query: 176 KTEQEKQK 183
K E+EK++
Sbjct: 339 KIEREKEE 346
Score = 31.6 bits (70), Expect = 0.20
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 15/62 (24%)
Query: 207 IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEK 266
I+V+Q + + +EK + + E+ E EK+K E E+E++K E+EK
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREM---------------AEKEKEKIEREK 344
Query: 267 QK 268
++
Sbjct: 345 EE 346
Score = 31.6 bits (70), Expect = 0.20
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 161 IKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQ 206
I+V+Q + + +EK + + E+ E EK+K E +++ IE +
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKE 345
Score = 31.2 bits (69), Expect = 0.26
Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 18/75 (24%)
Query: 158 NNQIKVEQKQQKT---EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQ 214
N+++ + +++ T +Q K + +EK + + E+ E EK +K++
Sbjct: 287 NHELYMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLENEK---------------KKRE 331
Query: 215 KTEQEKQKTEQEKQK 229
E+EK+K E+EK++
Sbjct: 332 MAEKEKEKIEREKEE 346
Score = 30.8 bits (68), Expect = 0.34
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 195 KQKTSNIETNNQIKVEQKQQKTEQEKQKT--EQEKQK---TEQEKQKTEQEKQK 243
++K IE Q+K + +++K +++ ++ E EK+K E+EK+K E+EK++
Sbjct: 294 RRKPDTIEVQ-QMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Score = 30.8 bits (68), Expect = 0.34
Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 149 KQKTSNIETNNQIKVEQKQQKTEQEKQKT--EQEKQK---TEQEKQKTEQEKQK 197
++K IE Q+K + +++K +++ ++ E EK+K E+EK+K E+EK++
Sbjct: 294 RRKPDTIEVQ-QMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 32.3 bits (72), Expect = 0.12
Identities = 24/97 (24%), Positives = 40/97 (40%), Gaps = 6/97 (6%)
Query: 143 QKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ------KTEQEKQ 196
Q+ Q T+ + T Q +EQ Q + Q EQ+ + E + KT + +
Sbjct: 124 QQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQG 183
Query: 197 KTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 233
++ NNQ QK Q+ EQ +Q ++ E
Sbjct: 184 DMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSE 220
Score = 29.3 bits (64), Expect = 0.98
Identities = 52/289 (17%), Positives = 97/289 (32%), Gaps = 42/289 (14%)
Query: 87 AMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTE 146
A ++ C ++ + A T A+ + + + ++QQ EQ Q + Q E
Sbjct: 102 ARIVARCLWEESRLLQTAATA--AQQGGQANHPTAAVVTEKQQMLEQHLQDVRKRVQDLE 159
Query: 147 QEKQKTSNIET--------------------NNQIKVEQKQQKTEQEKQKTEQEKQKTEQ 186
Q+ + N++ NNQ QK Q+ EQ +Q ++
Sbjct: 160 QKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVS 219
Query: 187 EKQKTEQEKQKTSNIETNNQIKVEQKQQ--------------KTEQEKQKTEQEKQKTEQ 232
E + T+ ++ +++Q + E + + +T Q
Sbjct: 220 ELAGLLSAMEYVQKTLTDEELADWKRRQQIACIGGPPNICLDRLENWITSLAESQLQTRQ 279
Query: 233 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQFF 292
+ +K E+ +QK S V+ E+ + N K Q C H
Sbjct: 280 QIKKLEELQQKVS---YKGDPIVQHRPMLEERIVELFRNLMKSAFVVERQPCMPMHPD-- 334
Query: 293 IKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 341
+ L IK G+ + P Q I+ +S + RGS+
Sbjct: 335 -RPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDKDSGDVAALRGSR 382
>pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 31.6 bits (70), Expect = 0.20
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 206 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE----QEKQKTSNIETNNQIKVEQEQQK 261
Q++ EQK+Q T QEK++ E++K E++ + E +E+ +E + + K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPK 161
Query: 262 TEQEKQKTN 270
T + K++ N
Sbjct: 162 TGKLKRRVN 170
Score = 30.8 bits (68), Expect = 0.34
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 4/71 (5%)
Query: 160 QIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE----QEKQKTSNIETNNQIKVEQKQQK 215
Q++ EQK+Q T QEK++ E++K E++ + E +E+ +E + + K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQVGNFKVEPPDLFRGRGAHPK 161
Query: 216 TEQEKQKTEQE 226
T + K++ E
Sbjct: 162 TGKLKRRVNPE 172
Score = 26.6 bits (57), Expect = 6.3
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 122 IELEQEQQKTEQEKQKTEQEKQKTEQE 148
++ EQ++Q T QEK++ E++K E++
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/55 (32%), Positives = 33/55 (59%), Gaps = 2/55 (3%)
Query: 190 KTEQEKQKTSNIETNNQIKVEQ--KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
K EK + + + N V + KQ++ EQ +K E+E+ K E+EK++ EQ+++
Sbjct: 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEK 259
Score = 30.8 bits (68), Expect = 0.34
Identities = 18/55 (32%), Positives = 33/55 (59%), Gaps = 2/55 (3%)
Query: 144 KTEQEKQKTSNIETNNQIKVEQ--KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 196
K EK + + + N V + KQ++ EQ +K E+E+ K E+EK++ EQ+++
Sbjct: 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEK 259
Score = 29.6 bits (65), Expect = 0.75
Identities = 17/55 (30%), Positives = 31/55 (55%)
Query: 135 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ 189
K E+ + T + + I Q +VEQ +K E+E+ K E+EK++ EQ+++
Sbjct: 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEK 259
Score = 29.6 bits (65), Expect = 0.75
Identities = 17/55 (30%), Positives = 31/55 (55%)
Query: 181 KQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQ 235
K E+ + T + + I Q +VEQ +K E+E+ K E+EK++ EQ+++
Sbjct: 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEK 259
Score = 28.9 bits (63), Expect = 1.3
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 100 KKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQ 150
K E+A +E R K E+EQ +K E+E+ K E+EK++ EQ+++
Sbjct: 210 KVEIATLTRENGKTVIRVLKQK-EVEQLIKKHEEEEAKAEREKKEKEQKEK 259
>pdb|1FXK|B Chain B, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 109
Score = 30.4 bits (67), Expect = 0.44
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 4/101 (3%)
Query: 168 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 227
Q+ +Q+ Q +KQ E + +T++ ++ S + ++ K + +E
Sbjct: 10 QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 69
Query: 228 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQK 268
Q EK +T Q ++KT + K QE Q QE K
Sbjct: 70 Q----EKLETLQLREKTIERQEERVXKKLQEXQVNIQEAXK 106
Score = 29.3 bits (64), Expect = 0.98
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
+L+Q+ Q +KQ E + +T++ ++ S + ++ K + +E
Sbjct: 11 QLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL- 69
Query: 183 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
QEK +T Q ++KT + K Q+ Q QE K
Sbjct: 70 ---QEKLETLQLREKTIERQEERVXKKLQEXQVNIQEAXK 106
Score = 28.5 bits (62), Expect = 1.7
Identities = 21/92 (22%), Positives = 48/92 (51%), Gaps = 5/92 (5%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE-QKQQKTE--Q 218
+++Q+ Q +KQ E + +T++ ++ + +++ I + K + TE Q
Sbjct: 11 QLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQ 70
Query: 219 EKQKTEQEKQKT--EQEKQKTEQEKQKTSNIE 248
EK +T Q ++KT QE++ ++ ++ NI+
Sbjct: 71 EKLETLQLREKTIERQEERVXKKLQEXQVNIQ 102
>pdb|1FXK|A Chain A, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 107
Score = 30.4 bits (67), Expect = 0.44
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 4/101 (3%)
Query: 168 QKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEK 227
Q+ +Q+ Q +KQ E + +T++ ++ S + ++ K + +E
Sbjct: 11 QQLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 70
Query: 228 QKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQK 268
Q EK +T Q ++KT + K QE Q QE K
Sbjct: 71 Q----EKLETLQLREKTIERQEERVXKKLQEXQVNIQEAXK 107
Score = 29.3 bits (64), Expect = 0.98
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 4/100 (4%)
Query: 123 ELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQ 182
+L+Q+ Q +KQ E + +T++ ++ S + ++ K + +E
Sbjct: 12 QLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL- 70
Query: 183 KTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
QEK +T Q ++KT + K Q+ Q QE K
Sbjct: 71 ---QEKLETLQLREKTIERQEERVXKKLQEXQVNIQEAXK 107
Score = 28.5 bits (62), Expect = 1.7
Identities = 21/92 (22%), Positives = 48/92 (51%), Gaps = 5/92 (5%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVE-QKQQKTE--Q 218
+++Q+ Q +KQ E + +T++ ++ + +++ I + K + TE Q
Sbjct: 12 QLQQQAQAISVQKQTVEXQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQ 71
Query: 219 EKQKTEQEKQKT--EQEKQKTEQEKQKTSNIE 248
EK +T Q ++KT QE++ ++ ++ NI+
Sbjct: 72 EKLETLQLREKTIERQEERVXKKLQEXQVNIQ 103
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 83 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 136
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 194
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 83 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 136
Score = 26.2 bits (56), Expect = 8.3
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 200 NIETNNQIKVEQ-KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
N++T K EQ + + + K + + K + K+ E +K+ +E +K+E +
Sbjct: 445 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE-EQLMKLEVQ 503
Query: 259 QQKTEQEKQKTNNTQK 274
E+ KQ T K
Sbjct: 504 ATDREENKQIALGTSK 519
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 82 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 135
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 194
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 82 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 135
Score = 26.2 bits (56), Expect = 8.3
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 200 NIETNNQIKVEQ-KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
N++T K EQ + + + K + + K + K+ E +K+ +E +K+E +
Sbjct: 444 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE-EQLMKLEVQ 502
Query: 259 QQKTEQEKQKTNNTQK 274
E+ KQ T K
Sbjct: 503 ATDREENKQIALGTSK 518
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 111 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 164
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 194
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 111 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 164
Score = 26.9 bits (58), Expect = 4.8
Identities = 61/320 (19%), Positives = 120/320 (37%), Gaps = 74/320 (23%)
Query: 144 KTEQEKQKTSNI-ETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT---- 198
K + K K + E +N+ K K +K E++K K +E++ E K K + K
Sbjct: 1 KKPKNKDKDKKVPEPDNKKK---KPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPP 57
Query: 199 -----SNIETNNQIKVEQKQQKTEQ----------EKQKTEQEKQKT---EQEKQKTEQE 240
N++ KV + K E+ + T++ +K + K+ T +E
Sbjct: 58 YEPLPENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEE 117
Query: 241 KQKTSNIETNN--------QIKVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ-- 290
K +N+ + + + E +Q +++EK K + L+K +NH +
Sbjct: 118 KNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERI 177
Query: 291 --FFIKKLGIKGG------------------IAIEVEAECKTPKPAKTNQTPIQPKHLPN 330
F I+ G+ G I I + K P P P
Sbjct: 178 ANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PG 225
Query: 331 SKQPHSQRGSKAQEFIAY---LQKELEFL---PYSQKAIAKQVNFYKPSSIAYLELDPRD 384
K + +K +++ +Q ++++ P S+ K Y+ + +D
Sbjct: 226 HKWKEVRHDNKVTWLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIR 285
Query: 385 FKVTEEWQKENLKIRSKAQA 404
+ E+W+ + +K+R +A A
Sbjct: 286 NQYREDWKSKEMKVRQRAVA 305
Score = 26.2 bits (56), Expect = 8.3
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 200 NIETNNQIKVEQ-KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQE 258
N++T K EQ + + + K + + K + K+ E +K+ +E +K+E +
Sbjct: 473 NLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLE-EQLMKLEVQ 531
Query: 259 QQKTEQEKQKTNNTQK 274
E+ KQ T K
Sbjct: 532 ATDREENKQIALGTSK 547
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 194
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 110 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 110 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 26.2 bits (56), Expect = 8.3
Identities = 55/299 (18%), Positives = 112/299 (37%), Gaps = 70/299 (23%)
Query: 164 EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT---------SNIETNNQIKVEQKQQ 214
++K +K E++K K +E++ E K K + K N++ KV +
Sbjct: 18 KKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSP 77
Query: 215 KTEQ----------EKQKTEQEKQKT---EQEKQKTEQEKQKTSNIETNN--------QI 253
K E+ + T++ +K + K+ T +EK +N+ + +
Sbjct: 78 KAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKA 137
Query: 254 KVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ----FFIKKLGIKGG-------- 301
+ E +Q +++EK K + L+K +NH + F I+ G+ G
Sbjct: 138 QTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMG 197
Query: 302 ----------IAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAY--- 348
I I + K P P P K + +K +++
Sbjct: 198 MLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVTWLVSWTEN 245
Query: 349 LQKELEFL---PYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQA 404
+Q ++++ P S+ K Y+ + +D + E+W+ + +K+R +A A
Sbjct: 246 IQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVA 304
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 142 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 194
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 110 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 30.0 bits (66), Expect = 0.57
Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%)
Query: 188 KQKTEQEKQKTSNIETNNQIKVEQK-QQKTEQEKQKTEQEKQKTEQEKQKTEQE 240
K+ T +EK +N+ + ++ Q + +TE KQ +++EK K ++E +K +E
Sbjct: 110 KEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 26.2 bits (56), Expect = 8.3
Identities = 55/299 (18%), Positives = 112/299 (37%), Gaps = 70/299 (23%)
Query: 164 EQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKT---------SNIETNNQIKVEQKQQ 214
++K +K E++K K +E++ E K K + K N++ KV +
Sbjct: 18 KKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPLPENVKFYYDGKVMKLSP 77
Query: 215 KTEQ----------EKQKTEQEKQKT---EQEKQKTEQEKQKTSNIETNN--------QI 253
K E+ + T++ +K + K+ T +EK +N+ + +
Sbjct: 78 KAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNIITNLSKCDFTQMSQYFKA 137
Query: 254 KVEQEQQKTEQEKQKTNNTQKDLVKYAEQNCQENHNQ----FFIKKLGIKGG-------- 301
+ E +Q +++EK K + L+K +NH + F I+ G+ G
Sbjct: 138 QTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRGRGNHPKMG 197
Query: 302 ----------IAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAY--- 348
I I + K P P P K + +K +++
Sbjct: 198 MLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVTWLVSWTEN 245
Query: 349 LQKELEFL---PYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQA 404
+Q ++++ P S+ K Y+ + +D + E+W+ + +K+R +A A
Sbjct: 246 IQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVA 304
>pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
Length = 757
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 101 KEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQK 144
K V + QKE E A+++ + + +EQ + QEK ++ Q +QK
Sbjct: 631 KHVLKIQKELEEAKEKLARQHDGVLEEQIERLQEKVESAQSEQK 674
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 28.5 bits (62), Expect = 1.7
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 125 EQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 184
EQE K +QE+ + +K K +QE++ + +E + +KQ + + +
Sbjct: 170 EQEFLKYQQEQGGHQSQKGKHQQEEENEGG-SILSGFTLEFLEHAFSVDKQIAKNLQGEN 228
Query: 185 E-QEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQ-EKQKTEQEKQ 242
E ++K K S I+ + ++ Q++ E+E+ + Q K K + ++ + Q K
Sbjct: 229 EGEDKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQRPRGSQSKS 288
Query: 243 KTSNIE 248
+ + I+
Sbjct: 289 RRNGID 294
Score = 27.3 bits (59), Expect = 3.7
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 13/119 (10%)
Query: 171 EQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKT 230
EQE K +QE+ + +K K +QE++ + +E + +KQ + + +
Sbjct: 170 EQEFLKYQQEQGGHQSQKGKHQQEEENEGGSILSG-FTLEFLEHAFSVDKQIAKNLQGEN 228
Query: 231 EQEKQKTEQEKQKTSNIETNNQIKV----EQEQQKTEQEKQKTNNTQKDLVKYAEQNCQ 285
E E K + + + V EQQ+ QE+++ +K K +++CQ
Sbjct: 229 EGE--------DKGAIVTVKGGLSVIKPPTDEQQQRPQEEEEEEEDEKPQCKGKDKHCQ 279
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 97 DQSKKEVAETQKEAENARDRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIE 156
D KK++ + + ENA DRA ++ E +K+ E+ ++ E E
Sbjct: 2 DAIKKKMQMLKLDKENALDRA-----------EQAEADKKAAEERSKQLEDEL------- 43
Query: 157 TNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEK 195
+ +++K + TE E K E K QEK + +K
Sbjct: 44 ----VALQKKLKGTEDELDKYS-ESLKDAQEKLELADKK 77
Score = 27.3 bits (59), Expect = 3.7
Identities = 17/79 (21%), Positives = 38/79 (47%), Gaps = 5/79 (6%)
Query: 163 VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQK 222
+++K Q + +K+ ++ E +K+ E+ ++ + + +++K + TE E K
Sbjct: 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLED----ELVALQKKLKGTEDELDK 59
Query: 223 TEQEKQKTEQEKQKTEQEK 241
E K QEK + +K
Sbjct: 60 YS-ESLKDAQEKLELADKK 77
>pdb|1B6A| Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/93 (17%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 115 DRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 174
DR + E+ +K ++K+K++ EQE K S + + ++ ++E+
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
Query: 175 QKTEQEKQ---KTEQEKQKTEQEKQKTSNIETN 204
+ +++ K+K +++K++ ++T+
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/110 (15%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 148 EKQKTSNIETNNQIKVEQKQQ----KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
E+ S N + + +++ E+ +K ++K+K++ EQE K S
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQ---KTEQEKQKTEQEKQKTSNIETN 250
+ + ++ ++E+ + +++ K+K +++K++ ++T+
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
>pdb|1BN5| Human Methionine Aminopeptidase 2
pdb|1BOA| Human Methionine Aminopeptidase 2 Complexed With Angiogenesis
Inhibitor Fumagillin
Length = 478
Score = 28.1 bits (61), Expect = 2.2
Identities = 16/93 (17%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 115 DRANKSGIELEQEQQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEK 174
DR + E+ +K ++K+K++ EQE K S + + ++ ++E+
Sbjct: 22 DREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKER 81
Query: 175 QKTEQEKQ---KTEQEKQKTEQEKQKTSNIETN 204
+ +++ K+K +++K++ ++T+
Sbjct: 82 DEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/110 (15%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 148 EKQKTSNIETNNQIKVEQKQQ----KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIET 203
E+ S N + + +++ E+ +K ++K+K++ EQE K S
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 204 NNQIKVEQKQQKTEQEKQKTEQEKQ---KTEQEKQKTEQEKQKTSNIETN 250
+ + ++ ++E+ + +++ K+K +++K++ ++T+
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 28.1 bits (61), Expect = 2.2
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 385 FKVTEEWQKENLKIRSKAQAKMLEMRDLKPDP 416
FK + W +EN+ + K K + +D PDP
Sbjct: 22 FKSLDNWAEENILVHLKPVEKCWQPQDFLPDP 53
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGO| Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 27.7 bits (60), Expect = 2.8
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 66 DYLKTHPNSWFNSAIGVTTITAMLMNVCFADDQSKKEVAETQKEAENARDRANKSGIELE 125
DYLK + I T +T + + E+ E KEA NA ++G+E++
Sbjct: 77 DYLKIDVGVHIDGFIADTAVTVRV-------GMEEDELMEAAKEALNAAISVARAGVEIK 129
Query: 126 QEQQKTEQEKQK 137
+ + E E +K
Sbjct: 130 ELGKAIENEIRK 141
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 27.7 bits (60), Expect = 2.8
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 172 QEKQKTEQEKQKTEQEKQKTEQE--KQKTSNIETNNQIKVEQKQQKTEQEK 220
+EK+K + E ++ ++E+ KT++E K+ +I ++K E+ +K EK
Sbjct: 12 KEKEKNKDENKRKDEERNKTQEEHLKEIMKHI-VKIEVKGEEAVKKEAAEK 61
Score = 27.7 bits (60), Expect = 2.8
Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 218 QEKQKTEQEKQKTEQEKQKTEQE--KQKTSNIETNNQIKVEQEQQKTEQEK 266
+EK+K + E ++ ++E+ KT++E K+ +I ++K E+ +K EK
Sbjct: 12 KEKEKNKDENKRKDEERNKTQEEHLKEIMKHI-VKIEVKGEEAVKKEAAEK 61
>pdb|1QS2|A Chain A, Crystal Structure Of Vip2 With Nad
Length = 401
Score = 27.7 bits (60), Expect = 2.8
Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 166 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN-IETNNQIKVEQKQ 213
K + +++K+K ++ ++ E+E + T EK K +N ++ N IK K+
Sbjct: 1 KVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKE 49
Score = 26.2 bits (56), Expect = 8.3
Identities = 13/49 (26%), Positives = 29/49 (58%), Gaps = 1/49 (2%)
Query: 212 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSN-IETNNQIKVEQEQ 259
K + +++K+K ++ ++ E+E + T EK K +N ++ N IK ++
Sbjct: 1 KVEDFKEDKEKAKEWGKEKEKEWKLTATEKGKMNNFLDNKNDIKTNYKE 49
>pdb|7CEI|B Chain B, The Endonuclease Domain Of Colicin E7 In Complex With Its
Inhibitor Im7 Protein
Length = 206
Score = 27.3 bits (59), Expect = 3.7
Identities = 25/143 (17%), Positives = 62/143 (42%), Gaps = 7/143 (4%)
Query: 130 KTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQ-KTEQEKQKTEQEK 188
K ++ + +K + ++ S+ + +E+++QK +EK K + +K+ +
Sbjct: 21 KAQRAQTDVNNKKAAFDAAAKEKSDADVALSSALERRKQKENKEKDAKAKLDKESKRNKP 80
Query: 189 QKTEQEKQKTSNIETNNQIK------VEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
K + + +N NN K ++ K ++ K+ + +K E+ + E
Sbjct: 81 GKATGKGKPVNNKWLNNAGKDLGSPVPDRIANKLRDKEFKSFDDFRKKFWEEVSKDPELS 140
Query: 243 KTSNIETNNQIKVEQEQQKTEQE 265
K + N+++KV + + Q+
Sbjct: 141 KQFSRNNNDRMKVGKAPKTRTQD 163
>pdb|1MU2|B Chain B, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 426
Score = 26.9 bits (58), Expect = 4.8
Identities = 21/92 (22%), Positives = 40/92 (42%)
Query: 174 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 233
K +E Q TE + + E+ + S + + + E++ + T Q+ Q + + ++E
Sbjct: 281 KMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEE 340
Query: 234 KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQE 265
K + K N TN + Q QK +E
Sbjct: 341 KILKVGKYAKVKNTHTNGIRLLAQVVQKIGKE 372
Score = 26.2 bits (56), Expect = 8.3
Identities = 20/87 (22%), Positives = 39/87 (43%)
Query: 133 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 192
+E Q TE + + E+ + S + + + E++ + T Q+ Q + + ++EK
Sbjct: 286 EEVQWTELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEEKILKV 345
Query: 193 QEKQKTSNIETNNQIKVEQKQQKTEQE 219
+ K N TN + Q QK +E
Sbjct: 346 GKYAKVKNTHTNGIRLLAQVVQKIGKE 372
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 26.9 bits (58), Expect = 4.8
Identities = 21/92 (22%), Positives = 40/92 (42%)
Query: 174 KQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQE 233
K +E Q TE + + E+ + S + + + E++ + T Q+ Q + + ++E
Sbjct: 286 KMTLTEEVQWTELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEE 345
Query: 234 KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQE 265
K + K N TN + Q QK +E
Sbjct: 346 KILKVGKYAKVKNTHTNGIRLLAQVVQKIGKE 377
Score = 26.2 bits (56), Expect = 8.3
Identities = 20/87 (22%), Positives = 39/87 (43%)
Query: 133 QEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQEKQKTEQEKQKTE 192
+E Q TE + + E+ + S + + + E++ + T Q+ Q + + ++EK
Sbjct: 291 EEVQWTELAEAELEENRIILSQEQEGHYYQEEKELEATVQKDQDNQWTYKIHQEEKILKV 350
Query: 193 QEKQKTSNIETNNQIKVEQKQQKTEQE 219
+ K N TN + Q QK +E
Sbjct: 351 GKYAKVKNTHTNGIRLLAQVVQKIGKE 377
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 26.6 bits (57), Expect = 6.3
Identities = 15/83 (18%), Positives = 40/83 (48%), Gaps = 13/83 (15%)
Query: 166 KQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQKQQKTEQEKQKTEQ 225
K E+E + +E+ +E ++ +E++K +K +K E+E+++ Q
Sbjct: 2 KSASGEKEGNENAEEEAAAIEEARREAEERRK-------------EKHRKMEEEREEMRQ 48
Query: 226 EKQKTEQEKQKTEQEKQKTSNIE 248
+ K+K ++E + ++++
Sbjct: 49 TIRDKYGLKKKVKEEPEAEADLD 71
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/35 (22%), Positives = 23/35 (64%)
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
+++ ++ T++E++ E+E + E + +E+EK+
Sbjct: 338 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKE 372
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/35 (22%), Positives = 23/35 (64%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 196
+++ ++ T++E++ E+E + E + +E+EK+
Sbjct: 338 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKE 372
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 386
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/35 (22%), Positives = 23/35 (64%)
Query: 208 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 242
+++ ++ T++E++ E+E + E + +E+EK+
Sbjct: 339 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKE 373
Score = 26.2 bits (56), Expect = 8.3
Identities = 8/35 (22%), Positives = 23/35 (64%)
Query: 162 KVEQKQQKTEQEKQKTEQEKQKTEQEKQKTEQEKQ 196
+++ ++ T++E++ E+E + E + +E+EK+
Sbjct: 339 ELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKE 373
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.304 0.121 0.315
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,340,311
Number of Sequences: 13198
Number of extensions: 89554
Number of successful extensions: 588
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 289
Number of HSP's gapped (non-prelim): 177
length of query: 461
length of database: 2,899,336
effective HSP length: 91
effective length of query: 370
effective length of database: 1,698,318
effective search space: 628377660
effective search space used: 628377660
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 56 (26.2 bits)