BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645797|ref|NP_207974.1| NA+/H+ antiporter (napA)
[Helicobacter pylori 26695]
(383 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1... 32 0.092
pdb|1QE3|A Chain A, Pnb Esterase 28 2.3
pdb|1C7I|A Chain A, Thermophylic Pnb Esterase 27 3.0
pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Hum... 26 8.6
>pdb|1FX0|B Chain B, Crystal Structure Of The Chloroplast F1-Atpase From
Spinach
pdb|1KMH|B Chain B, Crystal Structure Of Spinach Chloroplast F1-Atpase
Complexed With Tentoxin
Length = 498
Score = 32.3 bits (72), Expect = 0.092
Identities = 15/43 (34%), Positives = 22/43 (50%)
Query: 13 LLIVMAPYMSRISRLPITVVEILFGSVGAYVGFIEPTKGFEIM 55
L + A + R P V E+ GS G YVG E +GF+++
Sbjct: 419 LTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFQLI 461
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 3/63 (4%)
Query: 258 LIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFL--NPHLILQGILIVIAMLS-LHLITSTL 314
LI D G+ FF P +H TLD L +L P L ++ S +H++T L
Sbjct: 303 LIGTTRDEGYLFFTPDSDVHSQETLDAALEYLLGKPLAEKAADLYPRSLESQIHMMTDLL 362
Query: 315 LWR 317
WR
Sbjct: 363 FWR 365
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 27.3 bits (59), Expect = 3.0
Identities = 17/63 (26%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Query: 258 LIHKLNDVGFGFFVPLFFIHVGSTLDLKLVFLNPHLILQGILIVIAM---LSLHLITSTL 314
LI D G+ FF P ++ TLD L +L + + + + +H++T L
Sbjct: 303 LIGTTRDEGYFFFTPDSDVYSQETLDAALEYLLGKPLAEKVADLYPRSLESQIHMVTDLL 362
Query: 315 LWR 317
WR
Sbjct: 363 FWR 365
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl-Coa Dehydrogenase
Length = 396
Score = 25.8 bits (55), Expect = 8.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 327 FSFALGASMPLTFLVTTAAVGLKAQAISQNTYYAL 361
F A+GA +V AVGL +A+ + T YAL
Sbjct: 245 FKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYAL 279
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.336 0.150 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,806,659
Number of Sequences: 13198
Number of extensions: 67318
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 4
length of query: 383
length of database: 2,899,336
effective HSP length: 90
effective length of query: 293
effective length of database: 1,711,516
effective search space: 501474188
effective search space used: 501474188
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)