BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645798|ref|NP_207975.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(459 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase 27 3.7
pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycer... 27 4.8
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycer... 27 6.3
pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An A... 26 8.2
>pdb|1DXY| Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 27.3 bits (59), Expect = 3.7
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 39 GMFVGKKLGKEAIAAVNIAWPIFPGLIAYELLFGFGAASI 78
G F+GK+LG++ + + G +A +L GFGA I
Sbjct: 136 GTFIGKELGQQTVGVMGTG---HIGQVAIKLFKGFGAKVI 172
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 26.9 bits (58), Expect = 4.8
Identities = 25/102 (24%), Positives = 41/102 (39%), Gaps = 9/102 (8%)
Query: 243 QSTAEFSASVMILLFNT---AIMHTAGERFVSMYGIVMYN---AIIFFTTLFAISQGIQP 296
Q AEF + +++ F A + AG F V++ A+ + T + P
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNP 69
Query: 297 ---IASFSYGARNLERVKEVFVFGLKAAFCIGIVFYGAYYFL 335
IA + + + +V V + AFC + YG YY L
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 111
>pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
Length = 281
Score = 26.6 bits (57), Expect = 6.3
Identities = 25/102 (24%), Positives = 41/102 (39%), Gaps = 9/102 (8%)
Query: 243 QSTAEFSASVMILLFNT---AIMHTAGERFVSMYGIVMYN---AIIFFTTLFAISQGIQP 296
Q AEF + +++ F A + AG F V++ A+ + T + P
Sbjct: 10 QCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAHLNP 69
Query: 297 ---IASFSYGARNLERVKEVFVFGLKAAFCIGIVFYGAYYFL 335
IA + + + +V V + AFC + YG YY L
Sbjct: 70 AVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNL 111
>pdb|1DFC|A Chain A, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
pdb|1DFC|B Chain B, Crystal Structure Of Human Fascin, An Actin-Crosslinking
Protein
Length = 493
Score = 26.2 bits (56), Expect = 8.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 117 SETIARFFGSNDALLSMSKRYIEIILMGAVFMVLHPLADVFVVNDKR 163
SE R+FG + LS + + +V + +HP +++ V KR
Sbjct: 105 SEAHRRYFGGTEDRLSCFAQTVSPAEKWSVHIAMHPQVNIYSVTRKR 151
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.332 0.145 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,252,604
Number of Sequences: 13198
Number of extensions: 82474
Number of successful extensions: 220
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 4
length of query: 459
length of database: 2,899,336
effective HSP length: 91
effective length of query: 368
effective length of database: 1,698,318
effective search space: 624981024
effective search space used: 624981024
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)