BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645799|ref|NP_207976.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
         (391 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QBK|B  Chain B, Structure Of The Karyopherin Beta2-Ran ...    26  6.8
pdb|1JP4|A  Chain A, Crystal Structure Of An Enzyme Displayi...    26  8.9

>pdb|1QBK|B Chain B, Structure Of The Karyopherin Beta2-Ran Gppnhp Nuclear
           Transport Complex
          Length = 890

 Score = 26.2 bits (56), Expect = 6.8
 Identities = 15/43 (34%), Positives = 24/43 (54%)

Query: 29  TEFVPVALLSDIAKSFEMESATVGLMITAYAWVVSLGSLPLML 71
           T+F+    L++I  S  +  ATVG++IT  A    L + P +L
Sbjct: 88  TDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLL 130



>pdb|1JP4|A Chain A, Crystal Structure Of An Enzyme Displaying Both Inositol-
           Polyphosphate 1-Phosphatase And 3'-Phosphoadenosine-5'-
           Phosphate Phosphatase Activities
          Length = 308

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 324 VLQLAPDATDVASAIYSGSYNVGIGSGALFGSIVIHQLGLGYIGF 368
           ++ +A +   +A  I    YN   G  A+ G  +   LGLG  GF
Sbjct: 136 LIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWGVLGLGAFGF 180



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.332    0.145    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,903,695
Number of Sequences: 13198
Number of extensions: 69454
Number of successful extensions: 130
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 2
length of query: 391
length of database: 2,899,336
effective HSP length: 90
effective length of query: 301
effective length of database: 1,711,516
effective search space: 515166316
effective search space used: 515166316
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)