BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645801|ref|NP_207978.1| hypothetical protein
[Helicobacter pylori 26695]
(385 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 29 0.78
pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomeras... 29 0.78
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 29 0.78
pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In N... 29 0.78
pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I... 29 0.78
pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I... 29 0.78
pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s ... 29 1.0
pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment 28 1.7
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 28 1.7
pdb|1L2P|A Chain A, Atp Synthase B Subunit Dimerization Domain 28 1.7
pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor >gi|1697482... 28 2.3
pdb|1JKW| Structure Of Cyclin Mcs2 28 2.3
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 28 2.3
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 28 2.3
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 28 2.3
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 28 2.3
pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE... 27 3.0
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 27 3.9
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 27 3.9
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 27 3.9
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 27 5.1
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Com... 26 6.6
pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO 26 8.7
>pdb|1LPQ|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex Containing An 8-Oxog
Lesion
Length = 564
Score = 29.3 bits (64), Expect = 0.78
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 170 QKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ----FFIEKGGIKAG 225
Q ++ + +TE +Q +++EK K + + +K +NH + F IE G+ G
Sbjct: 103 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 162
Query: 226 IG------------------IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQ 267
G I + K P P P K + +K
Sbjct: 163 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVT 210
Query: 268 ELIAYLQKELESLPY----SQKAIAKQVDFYRPSSIAYLE--LDPRDFNVTEEWQKENLK 321
L+++ + S+ Y I + D+ + + L+ +D E+W+ + +K
Sbjct: 211 WLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMK 270
Query: 322 IRSKAQA 328
+R +A A
Sbjct: 271 VRQRAVA 277
>pdb|1EJ9|A Chain A, Crystal Structure Of Human Topoisomerase I Dna Complex
Length = 563
Score = 29.3 bits (64), Expect = 0.78
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 170 QKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ----FFIEKGGIKAG 225
Q ++ + +TE +Q +++EK K + + +K +NH + F IE G+ G
Sbjct: 102 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 161
Query: 226 IG------------------IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQ 267
G I + K P P P K + +K
Sbjct: 162 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVT 209
Query: 268 ELIAYLQKELESLPY----SQKAIAKQVDFYRPSSIAYLE--LDPRDFNVTEEWQKENLK 321
L+++ + S+ Y I + D+ + + L+ +D E+W+ + +K
Sbjct: 210 WLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMK 269
Query: 322 IRSKAQA 328
+R +A A
Sbjct: 270 VRQRAVA 276
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.3 bits (64), Expect = 0.78
Identities = 44/224 (19%), Positives = 102/224 (44%), Gaps = 42/224 (18%)
Query: 78 KAKELDDKVQDKSKQAEKENQINWWKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTS 137
K +EL + +++ ++AE E + K++ L +LL Q +L+ E + +
Sbjct: 862 KDEELQ-RTKERQQKAEAELKELEQKHTQLCEEKNLL-----------QEKLQAETELYA 909
Query: 138 NIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQ---ERQKTEQE------------ 182
E ++++ +KQ+ I + ++E+E+++++Q E++K +Q+
Sbjct: 910 EAE-EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 183 --RQKTEQEK----QKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEVEAECKT 236
RQK + EK K K + D + +QN + + +E+ + E E
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEE--- 1025
Query: 237 PKPAKTNQTPIQPKH--LPNSKQPRSQRGSKAQELIAYLQKELE 278
N T ++ KH + + + R ++ K+++ + ++++LE
Sbjct: 1026 ---KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Score = 27.7 bits (60), Expect = 2.3
Identities = 34/210 (16%), Positives = 93/210 (44%), Gaps = 11/210 (5%)
Query: 171 KTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAGIGIEV 230
+ E+E Q ++E Q+T++ +QK K+ + Q C+E + + + ++A +
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKN----LLQEKLQAETELYA 909
Query: 231 EAECKTPKPAKTNQTPIQPKHLPNSK----QPRSQRGSKAQELIAYLQKELESLPYSQKA 286
EAE + A Q + H ++ + RSQ+ ++ + +LE ++A
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 287 IAKQVDFYRPSSIAYLELDPRDFNVTEEWQKENLKIRSKAQAKMLEMRSLKPDSQAHLST 346
+++ + ++ ++ D + E+ + K R + ++ ++ + + +
Sbjct: 970 ARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE---EK 1026
Query: 347 SQSLLFVQKIFADVNKEIKVVANTEKKAEK 376
+++L ++ + E++V E+K+ +
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Score = 27.3 bits (59), Expect = 3.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 15/66 (22%)
Query: 166 EQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQFFIEKGGIKAG 225
E+E Q ++E Q+T++ +QK E E +K +EQ H Q EK ++
Sbjct: 856 EEEMQAKDEELQRTKERQQKAEAE-----------LKELEQ----KHTQLCEEKNLLQEK 900
Query: 226 IGIEVE 231
+ E E
Sbjct: 901 LQAETE 906
>pdb|1A36|A Chain A, Human Dna Topoisomerase I (70 Kda) In Non-Covalent Complex
With A 22 Base Pair Dna Duplex
Length = 592
Score = 29.3 bits (64), Expect = 0.78
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 170 QKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ----FFIEKGGIKAG 225
Q ++ + +TE +Q +++EK K + + +K +NH + F IE G+ G
Sbjct: 131 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 190
Query: 226 IG------------------IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQ 267
G I + K P P P K + +K
Sbjct: 191 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVT 238
Query: 268 ELIAYLQKELESLPY----SQKAIAKQVDFYRPSSIAYLE--LDPRDFNVTEEWQKENLK 321
L+++ + S+ Y I + D+ + + L+ +D E+W+ + +K
Sbjct: 239 WLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMK 298
Query: 322 IRSKAQA 328
+R +A A
Sbjct: 299 VRQRAVA 305
>pdb|1A31|A Chain A, Human Reconstituted Dna Topoisomerase I In Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 29.3 bits (64), Expect = 0.78
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 170 QKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ----FFIEKGGIKAG 225
Q ++ + +TE +Q +++EK K + + +K +NH + F IE G+ G
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189
Query: 226 IG------------------IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQ 267
G I + K P P P K + +K
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVT 237
Query: 268 ELIAYLQKELESLPY----SQKAIAKQVDFYRPSSIAYLE--LDPRDFNVTEEWQKENLK 321
L+++ + S+ Y I + D+ + + L+ +D E+W+ + +K
Sbjct: 238 WLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMK 297
Query: 322 IRSKAQA 328
+R +A A
Sbjct: 298 VRQRAVA 304
>pdb|1A35|A Chain A, Human Reconstituted Dna Topoisomerase I In Non-Covalent
Complex With A 22 Base Pair Dna Duplex
Length = 538
Score = 29.3 bits (64), Expect = 0.78
Identities = 36/187 (19%), Positives = 70/187 (37%), Gaps = 40/187 (21%)
Query: 170 QKTEQERQKTEQERQKTEQEKQKTIKTQKDFIKYVEQNCQENHNQ----FFIEKGGIKAG 225
Q ++ + +TE +Q +++EK K + + +K +NH + F IE G+ G
Sbjct: 130 QMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKERIANFKIEPPGLFRG 189
Query: 226 IG------------------IEVEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGSKAQ 267
G I + K P P P K + +K
Sbjct: 190 RGNHPKMGMLKRRIMPEDIIINCSKDAKVPSPP------------PGHKWKEVRHDNKVT 237
Query: 268 ELIAYLQKELESLPY----SQKAIAKQVDFYRPSSIAYLE--LDPRDFNVTEEWQKENLK 321
L+++ + S+ Y I + D+ + + L+ +D E+W+ + +K
Sbjct: 238 WLVSWTENIQGSIKYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMK 297
Query: 322 IRSKAQA 328
+R +A A
Sbjct: 298 VRQRAVA 304
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 28.9 bits (63), Expect = 1.0
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 140 ETNNQIKVEQEKQKTSNIETNNQIKVEQ--EQQKTEQERQKTEQERQKTEQEKQKTIKTQ 197
+T + K+ EK + + + N V + +Q++ EQ +K E+E K E+EK++ + +
Sbjct: 199 KTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKE 258
Query: 198 KD 199
KD
Sbjct: 259 KD 260
Score = 27.7 bits (60), Expect = 2.3
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 102 WKYSGLTIATSLLLAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNN 161
+K +T+ ++L LA + +L EK + + + N V I
Sbjct: 179 YKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTV---------IRVLK 229
Query: 162 QIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIK 195
Q +VEQ +K E+E K E R+K E+E+++ K
Sbjct: 230 QKEVEQLIKKHEEEEAKAE--REKKEKEQKEKDK 261
>pdb|1OIS| Yeast Dna Topoisomerase I, N-Terminal Fragment
Length = 223
Score = 28.1 bits (61), Expect = 1.7
Identities = 11/28 (39%), Positives = 21/28 (74%)
Query: 162 QIKVEQEQQKTEQERQKTEQERQKTEQE 189
Q++ EQ++Q T QE+++ ER+K E++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 28.1 bits (61), Expect = 1.7
Identities = 13/47 (27%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 147 VEQEKQKTSNIETNNQIKVEQEQQKTEQE-RQKTEQERQKTEQEKQK 192
+E ++ K E +Q ++E+ + E++ R+ E+E++K E+EK++
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
Score = 26.9 bits (58), Expect = 3.9
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 163 IKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKD 199
I+V+Q + + +E+ + + ER E EK+K +K+
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKE 336
Score = 26.2 bits (56), Expect = 6.6
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 128 ELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQKTEQERQK 185
EL ++K IE +E++ +E +++++ E+E++K E+E+++
Sbjct: 289 ELYMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLENEKKKREMAEKEKEKIEREKEE 346
>pdb|1L2P|A Chain A, Atp Synthase B Subunit Dimerization Domain
Length = 61
Score = 28.1 bits (61), Expect = 1.7
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 144 QIKVEQEKQKTSNIETNNQIKVEQEQQK-TEQERQKTEQERQKTEQEKQK 192
Q+ +EQ ++ S I + + EQE+ K Q + + E ER++ +E +K
Sbjct: 12 QVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRK 61
Score = 27.7 bits (60), Expect = 2.3
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 126 QIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQERQK 178
Q+ +EQ ++ S I + + EQE+ K I Q ++E E+++ +E +K
Sbjct: 12 QVIIEQANKRRSQILDEAKAEAEQERTK---IVAQAQAEIEAERKRAREELRK 61
>pdb|1J7N|B Chain B, Anthrax Toxin Lethal Factor
pdb|1J7N|A Chain A, Anthrax Toxin Lethal Factor
pdb|1JKY|A Chain A, Crystal Structure Of The Anthrax Lethal Factor (Lf): Wild-
Type Lf Complexed With The N-Terminal Sequence Of Mapkk2
Length = 776
Score = 27.7 bits (60), Expect = 2.3
Identities = 10/28 (35%), Positives = 20/28 (70%)
Query: 167 QEQQKTEQERQKTEQERQKTEQEKQKTI 194
+E++K + E ++ ++ER KT++E K I
Sbjct: 12 KEKEKNKDENKRKDEERNKTQEEHLKEI 39
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 4/68 (5%)
Query: 33 STITNIIRSIRGIFTKI----AKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQD 88
S + +I++S+R + K +++V L +K + SA L + +K E DD V
Sbjct: 246 SQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSK 305
Query: 89 KSKQAEKE 96
KSK E+E
Sbjct: 306 KSKHEEEE 313
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A
COMPLEX
Length = 267
Score = 27.7 bits (60), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSIRGIFTKIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ IRG KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 37 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 88
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 27.7 bits (60), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSIRGIFTKIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ IRG KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 11 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 62
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 27.7 bits (60), Expect = 2.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSIRGIFTKIAKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ IRG KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 14 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 65
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 27.7 bits (60), Expect = 2.3
Identities = 21/68 (30%), Positives = 35/68 (50%), Gaps = 4/68 (5%)
Query: 33 STITNIIRSIRGIFTKI----AKKVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQD 88
S + +I++S+R + K +++V L +K + SA L + +K E DD V
Sbjct: 256 SQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSK 315
Query: 89 KSKQAEKE 96
KSK E+E
Sbjct: 316 KSKHEEEE 323
>pdb|1QJB|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1IB1|A Chain A, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|B Chain B, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|C Chain C, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|D Chain D, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1QJA|B Chain B, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1QJB|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 1)
pdb|1QJA|A Chain A, 14-3-3 ZetaPHOSPHOPEPTIDE COMPLEX (MODE 2)
pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A38|B Chain B, 14-3-3 Protein Zeta Bound To R18 Peptide
pdb|1A4O|A Chain A, 14-3-3 Protein Zeta Isoform
pdb|1A4O|B Chain B, 14-3-3 Protein Zeta Isoform
pdb|1A4O|C Chain C, 14-3-3 Protein Zeta Isoform
pdb|1A4O|D Chain D, 14-3-3 Protein Zeta Isoform
pdb|1A37|A Chain A, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
pdb|1A37|B Chain B, 14-3-3 Protein Zeta Bound To Ps-Raf259 Peptide
Length = 245
Score = 27.3 bits (59), Expect = 3.0
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 115 LAACSTGDVSEQIELEQEKQKTSNIETNNQIKVEQEKQKTSNIETNNQIKVEQEQQKTEQ 174
+AAC + EL E++ ++ N + + + + +EQ+ + E+
Sbjct: 22 MAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVS-------SIEQKTEGAEK 74
Query: 175 ERQKTEQERQKTEQE 189
++Q + R+K E E
Sbjct: 75 KQQMAREYREKIETE 89
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 26.9 bits (58), Expect = 3.9
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 5/70 (7%)
Query: 159 TNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDF----IKYVEQNCQENHNQ 214
TNN +E + +K Q+ K E+E K +K K +T+ +F + +E++ + ++
Sbjct: 201 TNNLKSLEAQAEKYSQKEDKYEEE-IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259
Query: 215 FFIEKGGIKA 224
+ +K KA
Sbjct: 260 LYAQKLKYKA 269
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 26.9 bits (58), Expect = 3.9
Identities = 18/70 (25%), Positives = 36/70 (50%), Gaps = 5/70 (7%)
Query: 159 TNNQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQKDF----IKYVEQNCQENHNQ 214
TNN +E + +K Q+ K E+E K +K K +T+ +F + +E++ + ++
Sbjct: 201 TNNLKSLEAQAEKYSQKEDKYEEE-IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259
Query: 215 FFIEKGGIKA 224
+ +K KA
Sbjct: 260 LYAQKLKYKA 269
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 26.9 bits (58), Expect = 3.9
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Query: 158 ETNNQIKVEQEQQKTEQERQKTEQERQKTEQE---------------KQKTIKTQKDFIK 202
E ++ I+ +EQ TEQ + TE R+K E K+K + D I+
Sbjct: 93 EYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQ 152
Query: 203 YVEQNCQENHNQFFIEKGGIKAGIGIEVEA-ECKTPKPAKTNQTPIQPKHLPNSKQPRSQ 261
++ + Q ++K + I V+ + T K A+ Q ++ K N + + +
Sbjct: 153 VXXRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQ-KLEEKQAENLRAIQEK 211
Query: 262 RGSKAQELIAYLQKELESL 280
G QE +A +++L++L
Sbjct: 212 EGQLQQEAVAEYEEKLKTL 230
Score = 26.9 bits (58), Expect = 3.9
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 119 STGDVSEQIELEQEKQKTSNIETNNQIKVEQEK-----QKTSNIETNNQIKVEQEQQKTE 173
ST D + Q L++E + E IK+ EK QK + N +++++ + +
Sbjct: 157 STSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQ 216
Query: 174 QERQKTEQERQKT-EQEKQKTIK 195
QE +E+ KT E Q+ +K
Sbjct: 217 QEAVAEYEEKLKTLTVEVQEXVK 239
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 26.6 bits (57), Expect = 5.1
Identities = 16/73 (21%), Positives = 37/73 (49%), Gaps = 2/73 (2%)
Query: 140 ETNNQIKVEQEKQKTSNIETN--NQIKVEQEQQKTEQERQKTEQERQKTEQEKQKTIKTQ 197
E +I+VE+ K +++ ++++ + EQ ++ER E +Q TE+ + ++
Sbjct: 484 EKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLL 543
Query: 198 KDFIKYVEQNCQE 210
K+ + + QE
Sbjct: 544 KEQERTLALKLQE 556
>pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 391
Score = 26.2 bits (56), Expect = 6.6
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 311 VTEEWQKENLKIRSKAQAKMLEM--RSLKPDSQAHLSTSQSLLFVQKIFADVNKEIKVVA 368
+ EW E + +R + + L+M + D S + +L +K+F K IK +
Sbjct: 199 IRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAAS 258
Query: 369 NTEK 372
+TEK
Sbjct: 259 STEK 262
>pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO
Length = 184
Score = 25.8 bits (55), Expect = 8.7
Identities = 15/47 (31%), Positives = 30/47 (62%), Gaps = 5/47 (10%)
Query: 144 QIKVEQEKQKTSNIETN-NQIKVEQEQQKTEQERQKTEQERQKTEQE 189
+++VE+ Q + ET + ++E+ +QKT++E + ER ++EQE
Sbjct: 136 KLQVEEVHQLSRKAETKLAEAQIEELKQKTQEEGE----ERAESEQE 178
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.307 0.123 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,934,671
Number of Sequences: 13198
Number of extensions: 71410
Number of successful extensions: 206
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 41
length of query: 385
length of database: 2,899,336
effective HSP length: 90
effective length of query: 295
effective length of database: 1,711,516
effective search space: 504897220
effective search space used: 504897220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)