BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645802|ref|NP_207979.1| hypothetical protein
[Helicobacter pylori 26695]
(269 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal Complex... 28 1.1
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 27 3.2
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 27 3.2
pdb|1I4G|B Chain B, Crystal Structure Of Staphylococcal Ent... 26 4.2
pdb|1JKW| Structure Of Cyclin Mcs2 26 4.2
pdb|1ESF|A Chain A, Staphylococcal Enterotoxin A >gi|163323... 26 4.2
pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococc... 26 5.5
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-S... 26 5.5
pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Tempe... 25 7.2
pdb|1PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, An... 25 7.2
>pdb|1L4A|E Chain E, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 79
Score = 28.1 bits (61), Expect = 1.1
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 80 LEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQ 121
+E+ ++EAE R ++ E +E ++TI+++ L KK ++
Sbjct: 21 IEEARREAEERRKEKHRKMEEEREEMRQTIRDKYGLKKKVKE 62
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 26.6 bits (57), Expect = 3.2
Identities = 11/24 (45%), Positives = 19/24 (78%)
Query: 73 DIDKQIELEQEKKEAENARDRANK 96
D +++ E E+E++E +NARD+A K
Sbjct: 147 DEEEEDEDEEEEEEEQNARDQATK 170
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 26.6 bits (57), Expect = 3.2
Identities = 21/62 (33%), Positives = 27/62 (42%), Gaps = 15/62 (24%)
Query: 1 MKRVRELVKKH--PEKSSVALVVLTHAAC-------------KKAKELDDKVQDKSKQAE 45
MK +R LVKK+ P VA++ C +K E DD V KSK E
Sbjct: 262 MKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHEE 321
Query: 46 KE 47
+E
Sbjct: 322 EE 323
>pdb|1I4G|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4H|B Chain B, Crystal Structure Of Zn2+ Soakad Staphylococcal
Enterotoxin A Mutant H187a
pdb|1I4G|A Chain A, Crystal Structure Of Staphylococcal Enterotoxin A Mutant
H187a With Reduced Zn2+ Affinity
pdb|1I4H|A Chain A, Crystal Structure Of Zn2+ Soakad Staphylococcal
Enterotoxin A Mutant H187a
Length = 233
Score = 26.2 bits (56), Expect = 4.2
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Query: 83 EKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKG 139
EK E N +D KS EL+ +K+ +KA+ +E+H QF + KG
Sbjct: 2 EKSEEINEKDLRKKS--ELQGTALGNLKQIYYYNEKAKTENKESHDQFLQHTILFKG 56
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 26.2 bits (56), Expect = 4.2
Identities = 22/62 (35%), Positives = 28/62 (44%), Gaps = 15/62 (24%)
Query: 1 MKRVRELVKKHPEKSSVALVVLT------HAA---------CKKAKELDDKVQDKSKQAE 45
MK +R LVKK+ S + VL H+A +K E DD V KSK E
Sbjct: 252 MKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEE 311
Query: 46 KE 47
+E
Sbjct: 312 EE 313
>pdb|1ESF|A Chain A, Staphylococcal Enterotoxin A
pdb|1ESF|B Chain B, Staphylococcal Enterotoxin A
pdb|1SXT|A Chain A, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
pdb|1SXT|B Chain B, Staphylococcal Enterotoxin Type A (Sea) Co-Crystallised
With Zinc
Length = 233
Score = 26.2 bits (56), Expect = 4.2
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Query: 83 EKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFMKKLGIKG 139
EK E N +D KS EL+ +K+ +KA+ +E+H QF + KG
Sbjct: 2 EKSEEINEKDLRKKS--ELQGTALGNLKQIYYYNEKAKTENKESHDQFLQHTILFKG 56
>pdb|1LRZ|A Chain A, X-Ray Crystal Structure Of Staphylococcus Aureus Fema
Length = 426
Score = 25.8 bits (55), Expect = 5.5
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 76 KQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQKDLVKKAEQNCQENHGQFFM 132
K IE E K+A N RD + +L+ +QK I+E K L ++ + G FF+
Sbjct: 268 KDIEKRPENKKAHNKRDNLQQ---QLDANEQK-IEEGKRLQEEHGNELPISAGFFFI 320
>pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
Length = 435
Score = 25.8 bits (55), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 154 PAKTNQTPIQPKHLPNSKQPHSQRGS 179
P++T Q + P P+ PHS +GS
Sbjct: 24 PSETPQAEVGPTGCPHRSGPHSAKGS 49
>pdb|2PVB|A Chain A, Pike Parvalbumin (Pi 4.10) At Low Temperature (100k) And
Atomic Resolution (0.91 A)
Length = 107
Score = 25.4 bits (54), Expect = 7.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 55 YSGLTIA-TSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQK 113
++GL A + LAACS D K E + A + D K+ ++Q+K I+E +
Sbjct: 2 FAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDE 61
>pdb|1PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, And Nh4
pdb|1PVB| Parvalbumin (Pike, Pi 4.10) Complexed With Two Calcium Ions And
One Ammonium Ion
pdb|4PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Mg, And Mg
pdb|2PAL| Parvalbumin (Pi 4.10) Complexed With Mn, Mn, And Mn
pdb|3PAL| Parvalbumin (Pi 4.10) Complexed With Ca, Ca, And Mg
Length = 108
Score = 25.4 bits (54), Expect = 7.2
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 55 YSGLTIA-TSLLLAACSVGDIDKQIELEQEKKEAENARDRANKSGIELEQEKQKTIKEQK 113
++GL A + LAACS D K E + A + D K+ ++Q+K I+E +
Sbjct: 3 FAGLKDADVAAALAACSAADSFKHKEFFAKVGLASKSLDDVKKAFYVIDQDKSGFIEEDE 62
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.126 0.351
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,470,907
Number of Sequences: 13198
Number of extensions: 56901
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 10
length of query: 269
length of database: 2,899,336
effective HSP length: 87
effective length of query: 182
effective length of database: 1,751,110
effective search space: 318702020
effective search space used: 318702020
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (25.0 bits)