BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644750|ref|NP_206920.1| hypothetical protein
[Helicobacter pylori 26695]
(398 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 35 0.011
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Co... 32 0.13
pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolip... 31 0.28
pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta >g... 30 0.37
pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exc... 30 0.37
pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 A... 30 0.63
pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id:... 30 0.63
pdb|2TMA|A Chain A, Tropomyosin >gi|230768|pdb|2TMA|B Chain... 29 1.1
pdb|1JTH|C Chain C, Crystal Structure And Biophysical Prope... 28 1.8
pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturas... 28 1.8
pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicu... 28 2.4
pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2... 28 2.4
pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And F... 27 3.1
pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat... 27 4.1
pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1S... 27 4.1
pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Te... 27 4.1
pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Sna... 27 4.1
pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyos... 26 6.9
pdb|1JKW| Structure Of Cyclin Mcs2 26 6.9
pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk ... 26 6.9
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 26 9.1
pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-S... 26 9.1
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 26 9.1
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 35.4 bits (80), Expect = 0.011
Identities = 52/241 (21%), Positives = 100/241 (40%), Gaps = 16/241 (6%)
Query: 125 KQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQK 184
K+ ELE+ E E + + +L+ E++K + ++L + E RQK + EK
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 185 ANKSAIELE------QQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGG 238
A+ ++E + + + +R L++E+ + T +E + KL K
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDL--TTNLAEEEEKAKNLTKLKNKHE 1038
Query: 239 IAI-EVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRG---SKAQEFIAYLQKELEFLP 294
I E+E K + ++ I+ K S H Q ++ E A L K+ E L
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098
Query: 295 YSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMRDLKPDPQ 354
+ + + + + EL+ + E+ + E R+KA+ + RDL + +
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEK-AARNKAEK---QKRDLSEELE 1154
Query: 355 A 355
A
Sbjct: 1155 A 1155
Score = 30.4 bits (67), Expect = 0.37
Identities = 36/172 (20%), Positives = 83/172 (47%), Gaps = 10/172 (5%)
Query: 129 LEQEKKEAENAR-DRANKSGIELEQERQKTNKSGIELANSQIKAEQER-QKTEQEKQKAN 186
L QEK +AE A + + L ++Q+ + E+ ++I+ E+ER Q+ + EK+K
Sbjct: 896 LLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEM-EARIEEEEERSQQLQAEKKKMQ 954
Query: 187 KSAIELEQQKQKTINTQRDLIKEQ---KDFIKETEQN--CQENHNQFFIKKLGIKGGIAI 241
+ ++LE+Q ++ ++ L E+ IK+ E + E+ N K+ +
Sbjct: 955 QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Query: 242 EVEAECKTPKPAKTNQTPIQPKH--LPNSKQPHSQRGSKAQEFIAYLQKELE 291
++ + N T ++ KH + + + ++ K+++ + ++++LE
Sbjct: 1015 DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
Score = 29.6 bits (65), Expect = 0.63
Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 28/220 (12%)
Query: 172 EQERQKTEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIK 231
++E Q+T++ +QKA ELE QK + +++L++E+ E +E + K
Sbjct: 863 DEELQRTKERQQKAEAELKELE-QKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAK 921
Query: 232 KLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELE 291
K ++ I E+EA + + S+Q +++ K Q+ + L+++LE
Sbjct: 922 KQELE-EILHEMEARIEEEE--------------ERSQQLQAEK-KKMQQQMLDLEEQLE 965
Query: 292 FLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQAKMLEMR--DL 349
++A +++ K ++ ++ D + E+ + K R K+LE R DL
Sbjct: 966 ----EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER-----KLLEERVSDL 1016
Query: 350 KPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANTEKKAEK 389
+ +++L ++ + E+E E+K+ +
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQ 1056
Score = 29.6 bits (65), Expect = 0.63
Identities = 41/171 (23%), Positives = 68/171 (38%), Gaps = 12/171 (7%)
Query: 124 DKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQ 183
D+ +L +E+K E +R + L +E +K L + K E + E +
Sbjct: 997 DQNNKLTKERKLLE---ERVSDLTTNLAEEEEKAKN----LTKLKNKHESMISELEVRLK 1049
Query: 184 KANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKGGIA-IE 242
K KS ELE+ K+K DL ++ I E + E Q K+ ++ +A +E
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQ----IAELQAQIAELKAQLAKKEEELQAALARLE 1105
Query: 243 VEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSKAQEFIAYLQKELEFL 293
E K K + L + +KA++ L +ELE L
Sbjct: 1106 DETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEAL 1156
>pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp.
pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
Length = 592
Score = 32.0 bits (71), Expect = 0.13
Identities = 25/97 (25%), Positives = 52/97 (52%), Gaps = 19/97 (19%)
Query: 123 TDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEK 182
T+K+ E+E E+ +AE+A+ A ++ E Q+ N+ Q+ ++ER E K
Sbjct: 483 TEKEKEIEVERVKAESAQASA-----KMLHEMQRKNE--------QMMEQKERSYQEHLK 529
Query: 183 Q---KANKSAIELEQQKQKTINTQRDLIKEQKDFIKE 216
Q K ++L +++++T+ + ++EQ+ +KE
Sbjct: 530 QLTEKMENDRVQLLKEQERTLALK---LQEQEQLLKE 563
Score = 29.3 bits (64), Expect = 0.82
Identities = 23/89 (25%), Positives = 41/89 (45%), Gaps = 13/89 (14%)
Query: 123 TDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEK 182
TD ++ +Q E E E+E ER K + A++++ E +R+ + +
Sbjct: 472 TDAILQTDQTLTEKEK----------EIEVERVKAESAQ---ASAKMLHEMQRKNEQMME 518
Query: 183 QKANKSAIELEQQKQKTINTQRDLIKEQK 211
QK L+Q +K N + L+KEQ+
Sbjct: 519 QKERSYQEHLKQLTEKMENDRVQLLKEQE 547
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 30.8 bits (68), Expect = 0.28
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 141 DRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTI 200
D K+ LEQ RQ K+ EL + E+E + + Q A ++ ++ Q+ K +
Sbjct: 67 DANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEV 126
Query: 201 -----NTQRDLIKEQK----DFIKETEQNCQENH 225
T + L + K DF+K E+ ++ H
Sbjct: 127 ASNMEETNKKLAPKIKQAYDDFVKHAEEVQKKLH 160
>pdb|1JAD|A Chain A, C-Terminal Domain Of Turkey Plc-Beta
pdb|1JAD|B Chain B, C-Terminal Domain Of Turkey Plc-Beta
Length = 251
Score = 30.4 bits (67), Expect = 0.37
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 123 TDKQIELEQEKKEAE----NARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKT 178
T K EL +EK+ AE +N I+ + E ++ ++ + ++ KA QER K
Sbjct: 110 TAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLDRIQVXXRSTSDKAAQERLKK 169
Query: 179 EQEKQKANKSAIELEQQKQKTINTQRDLIKEQKD---FIKETEQNCQENHNQFFIKKLGI 235
E + ++ +KT Q+ L ++Q + I+E E Q+ + +KL
Sbjct: 170 EINNSHIQEVVQTIKLLTEKTARYQQKLEEKQAENLRAIQEKEGQLQQEAVAEYEEKLKT 229
Query: 236 KGGIAIEVEAECK 248
+ +EV+ K
Sbjct: 230 ---LTVEVQEXVK 239
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 30.4 bits (67), Expect = 0.37
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 122 DTDKQIELEQEKKEAENARDRANK-SGIELE-QERQKTNKSGIELANSQIKAEQE--RQK 177
D ++IE + + AE R K + +E + E Q + GI ++KAE E R++
Sbjct: 20 DQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGI----LRVKAEMENLRRR 75
Query: 178 TEQEKQKANKSAIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQENHNQFFIKKLGIKG 237
TE + +KA+K A+E + + D E D E+ L +
Sbjct: 76 TELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLDVVR 135
Query: 238 GIAIEVEAECKTPKPAKTNQ 257
+EV AE P +Q
Sbjct: 136 KFGVEVIAETNVPLDPNVHQ 155
>pdb|1C1G|A Chain A, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|B Chain B, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|C Chain C, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
pdb|1C1G|D Chain D, Crystal Structure Of Tropomyosin At 7 Angstroms Resolution
In The Spermine-Induced Crystal Form
Length = 284
Score = 29.6 bits (65), Expect = 0.63
Identities = 51/290 (17%), Positives = 120/290 (40%), Gaps = 52/290 (17%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQ--IKAEQERQKTEQEKQKA 185
+++ K + ENA DRA+++ + + ++ + EL + Q +KA ++ E K
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
Query: 186 NKSAIELEQQKQ-------KTINTQRDLIKEQKDFIKE---------------------- 216
+ +EL ++K ++N + L +E+ D +E
Sbjct: 67 AQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERG 126
Query: 217 ---TEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHS 273
E Q++ + I+++ +K I +A+ K + A+ + + + +
Sbjct: 127 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR------KLVIIESDLERAE 180
Query: 274 QRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKENL 333
+R ++ A L++E++ + + K++ Q Y Y E + KV + KE
Sbjct: 181 ERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE----EIKVLSDKLKE-- 234
Query: 334 KIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKI-FADVNKEIEAVAN 382
++ +A+ E K + + + L+ QK+ + +++E++ N
Sbjct: 235 ---AETRAEFAERSVTKLEKS--IDDLEDELYAQKLKYKAISEELDHALN 279
>pdb|1DHX| Adenovirus, Hexon Protein, Coat Protein Mol_id: 1; Molecule:
Adenovirus Type 2 Hexon; Chain: Null; Synonym:
Adenovirus Type 2 Polypeptide Ii
Length = 967
Score = 29.6 bits (65), Expect = 0.63
Identities = 16/56 (28%), Positives = 31/56 (54%), Gaps = 3/56 (5%)
Query: 120 AGDTDKQIELEQEKKEAENARDRANKSGIELEQ---ERQKTNKSGIELANSQIKAE 172
A D +++ E E+E++E +NARD+A K Q + KSG+++ + + +
Sbjct: 145 AEDEEEEDEDEEEEEEEQNARDQATKKTHVYAQAPLSGETITKSGLQIGSDNAETQ 200
>pdb|2TMA|A Chain A, Tropomyosin
pdb|2TMA|B Chain B, Tropomyosin
Length = 284
Score = 28.9 bits (63), Expect = 1.1
Identities = 54/291 (18%), Positives = 119/291 (40%), Gaps = 54/291 (18%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAE---------QERQKT 178
+++ K + ENA DRA ++ + + ++ + EL + Q K + E K
Sbjct: 7 KMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKD 66
Query: 179 EQEK-QKANKSAIELEQQKQKTINTQRDLIKEQKDFIKE--------------------- 216
QEK + A K A + E ++N + L++E+ D +E
Sbjct: 67 AQEKLELAEKKATDAEAD-VASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESER 125
Query: 217 ----TEQNCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPH 272
E Q++ + I+++ +K I +A+ K + A+ + + + +
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR------KLVIIESDLERA 179
Query: 273 SQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKVTEEWQKEN 332
+R ++ A L++E++ + + K++ Q Y Y E + KV + KE
Sbjct: 180 EERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEE----EIKVLSDKLKE- 234
Query: 333 LKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKI-FADVNKEIEAVAN 382
++ +A+ E K + + + L+ QK+ + +++E++ N
Sbjct: 235 ----AETRAEFAERSVTKLEKS--IDDLEDELYAQKLKYKAISEELDHALN 279
>pdb|1JTH|C Chain C, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|A Chain A, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 82
Score = 28.1 bits (61), Expect = 1.8
Identities = 17/75 (22%), Positives = 37/75 (48%)
Query: 120 AGDTDKQIELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTE 179
A D D + ELE+ ++ A+ D + +S + Q +++ +GI + ++ ++ E
Sbjct: 2 AEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERIE 61
Query: 180 QEKQKANKSAIELEQ 194
+ + NK E E+
Sbjct: 62 EGMDQINKDMKEAEK 76
>pdb|1AFR|A Chain A, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|B Chain B, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|C Chain C, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|D Chain D, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|E Chain E, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
pdb|1AFR|F Chain F, Stearoyl-Acyl Carrier Protein Desaturase From Castor Seeds
Length = 345
Score = 28.1 bits (61), Expect = 1.8
Identities = 11/32 (34%), Positives = 17/32 (52%)
Query: 322 FKVTEEWQKENLKIRSKAQAKMLEMRDLKPDP 353
FK + W +EN+ + K K + +D PDP
Sbjct: 22 FKSLDNWAEENILVHLKPVEKCWQPQDFLPDP 53
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 27.7 bits (60), Expect = 2.4
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 153 ERQKTNKSGIELANSQIKAEQERQKTEQEKQKANKSAIELEQQKQKTINTQRD 205
+R KT K+ + + N ++ AE+ ++K E+EK+K NK+ + Q + +N R+
Sbjct: 67 QRAKTIKNTVSV-NLELTAEEWKKKYEKEKEK-NKALKSVIQHLEVELNRWRN 117
>pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia
Coli
Length = 365
Score = 27.7 bits (60), Expect = 2.4
Identities = 18/53 (33%), Positives = 25/53 (46%), Gaps = 9/53 (16%)
Query: 125 KQIELEQEKKEAENARDRANKSGI---------ELEQERQKTNKSGIELANSQ 168
K E+E +KK AE NKS I L+ R K ++G+E N+Q
Sbjct: 294 KLYEVEXQKKNAEKQAXEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQ 346
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 27.3 bits (59), Expect = 3.1
Identities = 16/58 (27%), Positives = 29/58 (49%), Gaps = 11/58 (18%)
Query: 127 IELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQK 184
IE++Q K +A + + LE E++K AE+E++K E+EK++
Sbjct: 300 IEVQQMKAQAREEKHQKQMERAMLENEKKKREM-----------AEKEKEKIEREKEE 346
>pdb|1BG1|A Chain A, Three-Dimensional Structure Of The Stat3b Homodimer Bound
To Dna
Length = 722
Score = 26.9 bits (58), Expect = 4.1
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 164 LANSQIKAEQERQKTEQEKQKANKSAIELEQQK----QKTINTQRDLIKEQKDFIKETEQ 219
LA SQ++ Q+ +K E+ +QK + + Q + ++ + R+L+K F+ E Q
Sbjct: 270 LAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVELFRNLMKSA--FVVE-RQ 326
Query: 220 NCQENHNQFFIKKLGIKGGIAIEVEAECKTPKPAKTNQTPIQPKHLPNSKQPHSQRGSK 278
C H + L IK G+ + P Q I+ +S + RGS+
Sbjct: 327 PCMPMHPD---RPLVIKTGVQFTTKVRLLVKFPELNYQLKIKVCIDKDSGDVAALRGSR 382
>pdb|1DN1|B Chain B, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A
COMPLEX
Length = 267
Score = 26.9 bits (58), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSVGGFFTKIAKRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ + GF KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 37 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 88
>pdb|1BR0|A Chain A, Three Dimensional Structure Of The N-Terminal Domain Of
Syntaxin 1a
Length = 120
Score = 26.9 bits (58), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSVGGFFTKIAKRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ + GF KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 11 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 62
>pdb|1EZ3|A Chain A, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|B Chain B, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
pdb|1EZ3|C Chain C, Crystal Structure Of The Neuronal T-Snare Syntaxin-1a
Length = 127
Score = 26.9 bits (58), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 39 IRSVGGFFTKIAKRVRGLVKKHPKKSSAALVVLTHIACKKAKELDDKVQDKSKQAEK 95
+ + GF KIA+ V + +KH +A++ + K +EL++ + D K A K
Sbjct: 14 VEEIRGFIDKIAENVEEVKRKH-----SAILASPNPDEKTKEELEELMSDIKKTANK 65
>pdb|1IC2|A Chain A, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|C Chain C, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|B Chain B, Deciphering The Design Of The Tropomyosin Molecule
pdb|1IC2|D Chain D, Deciphering The Design Of The Tropomyosin Molecule
Length = 81
Score = 26.2 bits (56), Expect = 6.9
Identities = 14/68 (20%), Positives = 37/68 (53%), Gaps = 4/68 (5%)
Query: 128 ELEQEKKEAENARDRANKSGIELEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKANK 187
+++ K + ENA DRA ++ E +++ + +L + + +++ + TE E K ++
Sbjct: 7 KMQMLKLDKENALDRAEQA----EADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSE 62
Query: 188 SAIELEQQ 195
S + +++
Sbjct: 63 SLKDAQEK 70
>pdb|1JKW| Structure Of Cyclin Mcs2
Length = 323
Score = 26.2 bits (56), Expect = 6.9
Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 15/63 (23%)
Query: 49 IAKRVRGLVKKHPKKSSAALVVLT-------------HIACKKAK--ELDDKVQDKSKQA 93
I K +R LVKK+ S + VL ++ KK K E DD V KSK
Sbjct: 251 IMKSMRNLVKKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHE 310
Query: 94 EKE 96
E+E
Sbjct: 311 EEE 313
>pdb|1KXU| Cyclin H, A Positive Regulatory Subunit Of Cdk Activating Kinase
Length = 333
Score = 26.2 bits (56), Expect = 6.9
Identities = 22/63 (34%), Positives = 28/63 (43%), Gaps = 15/63 (23%)
Query: 49 IAKRVRGLVKKHPKKSSAALVVLT-------------HIACKKAK--ELDDKVQDKSKQA 93
I K +R LVKK+ S + VL ++ KK K E DD V KSK
Sbjct: 261 IMKSMRNLVKKYEPPRSEEVAVLKQKLERCHSAELALNVITKKRKGYEDDDYVSKKSKHE 320
Query: 94 EKE 96
E+E
Sbjct: 321 EEE 323
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 25.8 bits (55), Expect = 9.1
Identities = 23/133 (17%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 265 LPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKV 324
+ ++ Q +SQR ++ +A Q + + S + I + +N KP +LD V
Sbjct: 56 IDDTDQNYSQRIDNIRQQLADSQNKYKT---SNRVIVETINILKPGLEGAQQLDENYGHV 112
Query: 325 TEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANT- 383
+ E ++ + ++ + ++ ++ L+ Q + ++ ++++ D++ +I A +
Sbjct: 113 STELRRRIVTLKQRVATQVNRIKALQNSIQ------EQVVEMKRLEVDIDIKIRACKGSC 166
Query: 384 ----EKKAEKAGY 392
+ + +K GY
Sbjct: 167 ARSFDYQVDKEGY 179
>pdb|1JBQ|E Chain E, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|B Chain B, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|C Chain C, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|D Chain D, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
pdb|1JBQ|F Chain F, Structure Of Human Cystathionine Beta-Synthase: A Unique
Pyridoxal 5'-Phosphate Dependent Hemeprotein
Length = 435
Score = 25.8 bits (55), Expect = 9.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 252 PAKTNQTPIQPKHLPNSKQPHSQRGS 277
P++T Q + P P+ PHS +GS
Sbjct: 24 PSETPQAEVGPTGCPHRSGPHSAKGS 49
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 25.8 bits (55), Expect = 9.1
Identities = 23/133 (17%), Positives = 62/133 (46%), Gaps = 14/133 (10%)
Query: 265 LPNSKQPHSQRGSKAQEFIAYLQKELEFLPYSQKAIAKQVNFYKPSSIAYLELDPRDFKV 324
+ ++ Q +SQR ++ +A Q + + S + I + +N KP +LD V
Sbjct: 56 IDDTDQNYSQRIDNIRQQLADSQNKYKT---SNRVIVETINILKPGLEGAQQLDENYGHV 112
Query: 325 TEEWQKENLKIRSKAQAKMLEMRDLKPDPQAHLPTSQSLLFVQKIFADVNKEIEAVANT- 383
+ E ++ + ++ + ++ ++ L+ Q + ++ ++++ D++ +I A +
Sbjct: 113 STELRRRIVTLKQRVATQVNRIKALQNSIQ------EQVVEMKRLEVDIDIKIRACKGSC 166
Query: 384 ----EKKAEKAGY 392
+ + +K GY
Sbjct: 167 ARSFDYQVDKEGY 179
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.309 0.125 0.334
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,060,066
Number of Sequences: 13198
Number of extensions: 77420
Number of successful extensions: 237
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 214
Number of HSP's gapped (non-prelim): 34
length of query: 398
length of database: 2,899,336
effective HSP length: 90
effective length of query: 308
effective length of database: 1,711,516
effective search space: 527146928
effective search space used: 527146928
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)