BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645809|ref|NP_207986.1| translation elongation
factor EF-G (fusA) [Helicobacter pylori 26695]
(692 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 884 0.0
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 884 0.0
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 880 0.0
pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation F... 97 8e-21
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 70 6e-13
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 70 6e-13
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 69 1e-12
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 67 5e-12
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 61 5e-10
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 61 5e-10
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 61 5e-10
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 61 5e-10
pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRN... 58 3e-09
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 54 4e-08
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 53 1e-07
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 52 3e-07
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 51 4e-07
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 50 8e-07
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 45 2e-05
pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiati... 45 4e-05
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 35 0.021
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 35 0.021
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 33 0.11
pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced B... 30 1.2
pdb|1JQS|B Chain B, Fitting Of L11 Protein And Elongation F... 28 2.6
pdb|1FRD| Heterocyst [2fe-2s] Ferredoxin (Oxidized, Recom... 28 3.4
pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between ... 27 7.6
pdb|1BXN|I Chain I, The Crystal Structure Of Rubisco From A... 27 7.6
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 884 bits (2284), Expect = 0.0
Identities = 442/683 (64%), Positives = 543/683 (78%), Gaps = 3/683 (0%)
Query: 7 LNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSA 66
L R+RNIGIAAHIDAGKTTT+ERIL+YTG HKIGEVH+GAATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 67 ATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKY 126
TTCFWKDH+IN+IDTPGHVDFTIEVERSMRVLDGA+ VF S GV+PQSETVWRQA KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 127 GVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVW 186
VPRI F NKMD+ GA+ + V ++ RL A PV + +PIG EDTF G+ID+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 187 NNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEIKKGIK 246
N+ +G IP + L++A+EY EKLVE A+ DE +M KYL GEE + EE+ I+
Sbjct: 189 GND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 247 AGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDD 306
G +++ + P+ GS+ KNKGVQ LLDAV+DYLP+P ++ IKG P+ E V + +
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEV-VEIHPDPN 306
Query: 307 GEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDI 366
G A LAFKIM DP+VG+LTF+RVY G L SGSYVYN+TK +KERV RLL+MH+N RE++
Sbjct: 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEV 366
Query: 367 KEVYAGEICAFVGLKDTLTGDTLCDEKNA-VVLERMEFPEPVIHIAVEPKTKADQEKMGV 425
+E+ AG++ A VGLK+T+TGDTL E V+LE +E PEPVI +A+EPKTKADQEK+
Sbjct: 367 EELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQ 426
Query: 426 ALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRET 485
AL +LAEEDP+FRV T ETGQT+I GMGELHLEIIVDRLKREFKV+A +G+PQVA+RET
Sbjct: 427 ALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486
Query: 486 IRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGI 545
I V E K+ +Q+GGRGQYGHV IK+EP GSG+EFVN I GGVIPKEYIPAV KGI
Sbjct: 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGI 546
Query: 546 QEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMM 605
+EAMQ+G L G+PVVD KVTLYDGSYH+VDSSEMAFKIAGSMA KEA + +PV+LEP+M
Sbjct: 547 EEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIM 606
Query: 606 KVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGR 665
+VEV PEEYMGDVIGDLN RRGQI M+ R +++ AFVPL EMFGY+TDLRS TQGR
Sbjct: 607 RVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGR 666
Query: 666 GTYSMEFDHYGEVPSNIAKEIVE 688
G++ M FDHY EVP + +++++
Sbjct: 667 GSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 884 bits (2283), Expect = 0.0
Identities = 442/683 (64%), Positives = 542/683 (78%), Gaps = 3/683 (0%)
Query: 7 LNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSA 66
L R+RNIGIAAHIDAGKTTT+ERIL+YTG HKIGEVH+GAATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 67 ATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKY 126
TTCFWKDH+IN+IDTPGHVDFTIEVERSMRVLDGA+ VF S GV+PQSETVWRQA KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 127 GVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVW 186
VPRI F NKMD+ GA+ + V ++ RL A PV + +PIG EDTF G+ID+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 187 NNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEIKKGIK 246
N+ +G IP + L+ A+EY EKLVE A+ DE +M KYL GEE + EE+ I+
Sbjct: 189 GND-LGTDIREIPIPEEYLDNAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 247 AGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDD 306
G +++ + P+ GS+ KNKGVQ LLDAV+DYLP+P ++ IKG P+ E V + +
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEV-VEIHPDPN 306
Query: 307 GEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDI 366
G A LAFKIM DP+VG+LTF+RVY G L SGSYVYN+TK +KERV RLL+MH+N RE++
Sbjct: 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEV 366
Query: 367 KEVYAGEICAFVGLKDTLTGDTLCDEKNA-VVLERMEFPEPVIHIAVEPKTKADQEKMGV 425
+E+ AG++ A VGLK+T+TGDTL E V+LE +E PEPVI +A+EPKTKADQEK+
Sbjct: 367 EELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQ 426
Query: 426 ALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRET 485
AL +LAEEDP+FRV T ETGQT+I GMGELHLEIIVDRLKREFKV+A +G+PQVA+RET
Sbjct: 427 ALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486
Query: 486 IRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGI 545
I V E K+ +Q+GGRGQYGHV IK+EP GSG+EFVN I GGVIPKEYIPAV KGI
Sbjct: 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGI 546
Query: 546 QEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMM 605
+EAMQ+G L G+PVVD KVTLYDGSYH+VDSSEMAFKIAGSMA KEA + +PV+LEP+M
Sbjct: 547 EEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIM 606
Query: 606 KVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGR 665
+VEV PEEYMGDVIGDLN RRGQI M+ R +++ AFVPL EMFGY+TDLRS TQGR
Sbjct: 607 RVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGR 666
Query: 666 GTYSMEFDHYGEVPSNIAKEIVE 688
G++ M FDHY EVP + +++++
Sbjct: 667 GSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 880 bits (2274), Expect = 0.0
Identities = 441/683 (64%), Positives = 542/683 (78%), Gaps = 3/683 (0%)
Query: 7 LNRIRNIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSA 66
L R+RNIGIAAHIDAGKTTT+ERIL+YTG HKIGEVH+GAATMD+MEQE+ERGITIT+A
Sbjct: 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA 68
Query: 67 ATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKY 126
TTCFWKDH+IN+IDTPGHVDFTIEVERSMRVLDGA+ VF S GV+PQSETVWRQA KY
Sbjct: 69 VTTCFWKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY 128
Query: 127 GVPRIVFVNKMDRIGANFYNVENQIKLRLKANPVPINIPIGAEDTFIGVIDLVQMKAIVW 186
VPRI F NKMD+ GA+ + V ++ RL A PV + +PIG EDTF G+ID+++MKA +
Sbjct: 129 KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVMQLPIGREDTFSGIIDVLRMKAYTY 188
Query: 187 NNETMGAKYDVEEIPSDLLEKAKEYREKLVEAVAEQDEALMEKYLGGEELSIEEIKKGIK 246
N+ +G IP + L++A+EY EKLVE A+ DE +M KYL GEE + EE+ I+
Sbjct: 189 GND-LGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAAIR 247
Query: 247 AGCLNMSLVPMLCGSSFKNKGVQTLLDAVIDYLPAPTEVVDIKGIDPKTEEEVFVKSSDD 306
G +++ + P+ GS+ KNKGVQ LLDAV+DYLP+P ++ IKG P+ E V + +
Sbjct: 248 KGTIDLKITPVFLGSALKNKGVQLLLDAVVDYLPSPLDIPPIKGTTPEGEV-VEIHPDPN 306
Query: 307 GEFAGLAFKIMTDPFVGQLTFVRVYRGKLESGSYVYNSTKDKKERVGRLLKMHSNKREDI 366
G A LAFKIM DP+VG+LTF+RVY G L SGSYVYN+TK +KERV RLL+MH+N RE++
Sbjct: 307 GPLAALAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEV 366
Query: 367 KEVYAGEICAFVGLKDTLTGDTLCDEKNA-VVLERMEFPEPVIHIAVEPKTKADQEKMGV 425
+E+ AG++ A VGLK+T+TGDTL E V+LE +E PEPVI +A+EPKTKADQEK+
Sbjct: 367 EELKAGDLGAVVGLKETITGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTKADQEKLSQ 426
Query: 426 ALGKLAEEDPSFRVMTQEETGQTLIGGMGELHLEIIVDRLKREFKVEAEIGQPQVAFRET 485
AL +LAEEDP+FRV T ETGQT+I GMGELHLEIIVDRLKREFKV+A +G+PQVA+RET
Sbjct: 427 ALARLAEEDPTFRVSTHPETGQTIISGMGELHLEIIVDRLKREFKVDANVGKPQVAYRET 486
Query: 486 IRSSVSKEHKYAKQSGGRGQYGHVFIKLEPKEPGSGYEFVNEISGGVIPKEYIPAVDKGI 545
I V E K+ +Q+GGRGQYGHV IK+EP GSG+EFVN I GGVIPKEYIPAV KGI
Sbjct: 487 ITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIPKEYIPAVQKGI 546
Query: 546 QEAMQNGVLAGYPVVDFKVTLYDGSYHDVDSSEMAFKIAGSMAFKEASRAANPVLLEPMM 605
+EAMQ+G L G+PVVD KVTLYDGSY +VDSSEMAFKIAGSMA KEA + +PV+LEP+M
Sbjct: 547 EEAMQSGPLIGFPVVDIKVTLYDGSYAEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIM 606
Query: 606 KVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQGR 665
+VEV PEEYMGDVIGDLN RRGQI M+ R +++ AFVPL EMFGY+TDLRS TQGR
Sbjct: 607 RVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGR 666
Query: 666 GTYSMEFDHYGEVPSNIAKEIVE 688
G++ M FDHY EVP + +++++
Sbjct: 667 GSFVMFFDHYQEVPKQVQEKLIK 689
>pdb|1JQS|C Chain C, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 68
Score = 96.7 bits (239), Expect = 8e-21
Identities = 46/68 (67%), Positives = 54/68 (78%)
Query: 605 MKVEVEVPEEYMGDVIGDLNRRRGQINSMDDRLGLKIVNAFVPLVEMFGYSTDLRSATQG 664
M+VEV PEEYMGDVIGDLN RRGQI M+ R +++ AFVPL EMFGY+TDLRS TQG
Sbjct: 1 MRVEVTTPEEYMGDVIGDLNARRGQILGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQG 60
Query: 665 RGTYSMEF 672
RG++ M F
Sbjct: 61 RGSFVMFF 68
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 70.5 bits (171), Expect = 6e-13
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + + F T + EV D +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEYE 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRI 131
+ +D PGH D+ + +DGA+ V + G PQ+ A + GVP I
Sbjct: 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI 131
Query: 132 -VFVNKMDRI 140
VF+NK+D +
Sbjct: 132 VVFMNKVDMV 141
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 70.5 bits (171), Expect = 6e-13
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + + F T + EV D +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEYE 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRI 131
+ +D PGH D+ + +DGA+ V + G PQ+ A + GVP I
Sbjct: 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI 131
Query: 132 -VFVNKMDRI 140
VF+NK+D +
Sbjct: 132 VVFMNKVDMV 141
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 69.3 bits (168), Expect = 1e-12
Identities = 42/130 (32%), Positives = 64/130 (48%), Gaps = 2/130 (1%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + + + T + EV D +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEYE 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRI 131
+ +D PGH D+ + +DGA+ V + G PQ+ A + GVP I
Sbjct: 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI 131
Query: 132 -VFVNKMDRI 140
VF+NK+D +
Sbjct: 132 VVFMNKVDMV 141
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 67.4 bits (163), Expect = 5e-12
Identities = 41/130 (31%), Positives = 63/130 (47%), Gaps = 2/130 (1%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + + + + EV D +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKD-YGDIDKAPEERARGITINTAHVEYE 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRI 131
+ +D PGH D+ + +DGA+ V + G PQ+ A + GVP I
Sbjct: 72 TAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYI 131
Query: 132 -VFVNKMDRI 140
VF+NK+D +
Sbjct: 132 VVFMNKVDMV 141
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 60.8 bits (146), Expect = 5e-10
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 11/134 (8%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAAT----MDWMEQEKERGITITSAA 67
N+G H+D GKTT + ++ + + + GAA +D +EK RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLT------AAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSH 66
Query: 68 TTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYG 127
+D PGH D+ + +DGA+ V + G PQ+ + G
Sbjct: 67 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 128 VPR-IVFVNKMDRI 140
VP IVF+NK D +
Sbjct: 127 VPYIIVFLNKCDMV 140
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 60.8 bits (146), Expect = 5e-10
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 11/134 (8%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAAT----MDWMEQEKERGITITSAA 67
N+G H+D GKTT + ++ + + + GAA +D +EK RGITI ++
Sbjct: 13 NVGTIGHVDHGKTTLT------AAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSH 66
Query: 68 TTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYG 127
+D PGH D+ + +DGA+ V + G PQ+ + G
Sbjct: 67 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 126
Query: 128 VPR-IVFVNKMDRI 140
VP IVF+NK D +
Sbjct: 127 VPYIIVFLNKCDMV 140
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 60.8 bits (146), Expect = 5e-10
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 11/134 (8%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAAT----MDWMEQEKERGITITSAA 67
N+G H+D GKTT + ++ + + + GAA +D +EK RGITI ++
Sbjct: 5 NVGTIGHVDHGKTTLT------AAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSH 58
Query: 68 TTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYG 127
+D PGH D+ + +DGA+ V + G PQ+ + G
Sbjct: 59 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 118
Query: 128 VPR-IVFVNKMDRI 140
VP IVF+NK D +
Sbjct: 119 VPYIIVFLNKCDMV 132
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 60.8 bits (146), Expect = 5e-10
Identities = 40/134 (29%), Positives = 62/134 (45%), Gaps = 11/134 (8%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAAT----MDWMEQEKERGITITSAA 67
N+G H+D GKTT + ++ + + + GAA +D +EK RGITI ++
Sbjct: 14 NVGTIGHVDHGKTTLT------AAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSH 67
Query: 68 TTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYG 127
+D PGH D+ + +DGA+ V + G PQ+ + G
Sbjct: 68 VEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVG 127
Query: 128 VPR-IVFVNKMDRI 140
VP IVF+NK D +
Sbjct: 128 VPYIIVFLNKCDMV 141
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND BOSOMAL
Proteins Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 58.2 bits (139), Expect = 3e-09
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + + + ++ EV D +D +E+ RGITI +A
Sbjct: 13 NVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKD-YGDIDKAREERARGITINTAHVEYE 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPRI 131
+ +D GH D+ + +DGA+ V + G Q+ A + GV I
Sbjct: 72 TAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHILLARQVGVRYI 131
Query: 132 -VFVNKMDRI 140
VF+NK+D +
Sbjct: 132 VVFMNKVDMV 141
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 54.3 bits (129), Expect = 4e-08
Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
Query: 12 NIGIAAHIDAGKTTTSERI--LFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATT 69
N+G H+D GKTT + I + G K + + +D +E+ RGITI +A
Sbjct: 5 NVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEE----IDNAPEERARGITINAAHVE 60
Query: 70 CFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVP 129
D PGH D+ + LDG + V + G PQ+ A + GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 130 R-IVFVNKMDRI 140
+V+VNK D +
Sbjct: 121 HVVVYVNKADAV 132
Score = 29.6 bits (65), Expect = 1.2
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 266 KGVQTLLDAVIDYLPAPT------------EVVDIKG---IDPKTEEEVFVKSSDDGEFA 310
K VQ LLDAV Y+P PT V I G + T E +K D+ EF
Sbjct: 180 KSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDECEFL 239
Query: 311 GLAFKIMT 318
G + I T
Sbjct: 240 GHSKNIRT 247
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 53.1 bits (126), Expect = 1e-07
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHK---------IGEVHDGAATMDW----MEQEKE 58
N+ + H+D+GK+TT+ +++ G K E+ G+ W ++ E+E
Sbjct: 9 NVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERE 68
Query: 59 RGITITSAATTCFWKDHQINLIDTPGHVDF-------TIEVERSMRVLDGAVSVFCSVGG 111
RGITI A +Q+ +ID PGH DF T + + ++ ++ G V F +
Sbjct: 69 RGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGIS 128
Query: 112 VQPQSETVWRQANKYGVPR-IVFVNKMDRI 140
Q+ A GV + IV VNKMD +
Sbjct: 129 KDGQTREHALLAFTLGVRQLIVAVNKMDSV 158
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 51.6 bits (122), Expect = 3e-07
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + I T ++ G GITI ++
Sbjct: 14 NVGTIGHVDHGKTTLTAAIT--TVLAKTYGGAAXXXXXXXXXXXXXXXGITINTSHVEYD 71
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPR- 130
+D PGH D+ + +DGA+ V + G PQ+ + GVP
Sbjct: 72 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 131
Query: 131 IVFVNKMDRI 140
IVF+NK D +
Sbjct: 132 IVFLNKCDMV 141
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 51.2 bits (121), Expect = 4e-07
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITITSAATTCF 71
N+G H+D GKTT + I T ++ G GITI ++
Sbjct: 13 NVGTIGHVDHGKTTLTAAIT--TVLAKTYGGAARXXXXXXXXXXXXXXGITINTSHVEYD 70
Query: 72 WKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANKYGVPR- 130
+D PGH D+ + +DGA+ V + G PQ+ + GVP
Sbjct: 71 TPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYI 130
Query: 131 IVFVNKMDRI 140
IVF+NK D +
Sbjct: 131 IVFLNKCDMV 140
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 50.1 bits (118), Expect = 8e-07
Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 25/159 (15%)
Query: 1 MARKTPLNRIRNIGIAAHIDAGKTTTSERILFYTG------------VSHKIG-EVHDGA 47
M++K LN I + H+D GK+T R+L G + K+G E A
Sbjct: 1 MSQKPHLNLI----VIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFA 56
Query: 48 ATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFC 107
+D +++E+ERG+TI K + +ID PGH DF + D A+ V
Sbjct: 57 FLLDRLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVS 116
Query: 108 SVGGVQPQSETVWRQANKYGV--------PRIVFVNKMD 138
+ G +V Q ++ + IV VNKMD
Sbjct: 117 AKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD 155
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 45.4 bits (106), Expect = 2e-05
Identities = 39/135 (28%), Positives = 59/135 (42%), Gaps = 14/135 (10%)
Query: 13 IGIAAHIDAGKTTTSERILFYTGVSHKIGEV--HDGAAT--MDWMEQ---EKERGITITS 65
+ + H+D GKTT + I S + G + H GA MD +E + + +I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 66 AATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQANK 125
F+ IDTPGH FT +R + D A+ + G +PQ++
Sbjct: 68 TLPGLFF-------IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRM 120
Query: 126 YGVPRIVFVNKMDRI 140
Y P +V NK+DRI
Sbjct: 121 YRTPFVVAANKIDRI 135
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 44.7 bits (104), Expect = 4e-05
Identities = 38/137 (27%), Positives = 54/137 (38%), Gaps = 18/137 (13%)
Query: 13 IGIAAHIDAGKTTTSERILFYTGVSHKIGEV--HDGAATMDWMEQEKERGITITSAATTC 70
+ + H+D GKTT + I S + G + H GA E +
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGAT---------EIPXDVIEGICGD 58
Query: 71 FWKDHQIN-------LIDTPGHVDFTIEVERSMRVLDGAVSVFCSVGGVQPQSETVWRQA 123
F K I IDTPGH FT +R + D A+ + G +PQ++
Sbjct: 59 FLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNIL 118
Query: 124 NKYGVPRIVFVNKMDRI 140
Y P +V NK+DRI
Sbjct: 119 RXYRTPFVVAANKIDRI 135
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 35.4 bits (80), Expect = 0.021
Identities = 31/120 (25%), Positives = 47/120 (38%), Gaps = 38/120 (31%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITIT------- 64
NIG+ H+D GKTT ++ + TGV D +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGV------------WTDTHSEELRRGITIKIGFADAE 56
Query: 65 ----------SAATTCFWKDHQ------INLIDTPGHVDFTIEVERSMRVLDGAVSVFCS 108
S + C + H+ ++ ID PGH + ++DGA+ V +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 35.4 bits (80), Expect = 0.021
Identities = 31/120 (25%), Positives = 47/120 (38%), Gaps = 38/120 (31%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITIT------- 64
NIG+ H+D GKTT ++ + TGV D +E RGITI
Sbjct: 12 NIGMVGHVDHGKTTLTKAL---TGV------------WTDTHSEELRRGITIKIGFADAE 56
Query: 65 ----------SAATTCFWKDHQ------INLIDTPGHVDFTIEVERSMRVLDGAVSVFCS 108
S + C + H+ ++ ID PGH + ++DGA+ V +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAA 116
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 33.1 bits (74), Expect = 0.11
Identities = 31/120 (25%), Positives = 44/120 (35%), Gaps = 38/120 (31%)
Query: 12 NIGIAAHIDAGKTTTSERILFYTGVSHKIGEVHDGAATMDWMEQEKERGITIT------- 64
NIG H+D GKTT ++ + TGV D +E RGITI
Sbjct: 12 NIGXVGHVDHGKTTLTKAL---TGV------------WTDTHSEELRRGITIKIGFADAE 56
Query: 65 ----------SAATTCFWKDHQ------INLIDTPGHVDFTIEVERSMRVLDGAVSVFCS 108
S + C + H+ ++ ID PGH + DGA+ V +
Sbjct: 57 IRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXDGAILVIAA 116
>pdb|621P| H-Ras P21 Protein Mutant With Gln 61 Replaced By His (Q61h)
Complex With Guanosine-5'-[b,G-Imido] Triphosphate
Length = 166
Score = 29.6 bits (65), Expect = 1.2
Identities = 17/67 (25%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Query: 77 INLIDTPGHVDFTIEVERSMRVLDGAVSVFC-----SVGGVQPQSETVWRQANKYGVPRI 131
++++DT GH +++ ++ MR +G + VF S + E + R + VP +
Sbjct: 53 LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 132 VFVNKMD 138
+ NK D
Sbjct: 113 LVGNKCD 119
>pdb|1JQS|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Domain G'
And V) In The Cryo-Em Map Of E. Coli 70s Ribosome Bound
With Ef-G And Gmppcp, A Nonhydrolysable Gtp Analog
Length = 32
Score = 28.5 bits (62), Expect = 2.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 220 AEQDEALMEKYLGGEELSIEEIKKGIKAGCL 250
A+ DE +M KYL GEE + EE+ I+ G +
Sbjct: 2 ADFDENIMLKYLEGEEPTEEELVAAIRKGTI 32
>pdb|1FRD| Heterocyst [2fe-2s] Ferredoxin (Oxidized, Recombinant Form)
Length = 98
Score = 28.1 bits (61), Expect = 3.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 75 HQINLIDTPGHVDFTIEVERSMRVLDGA 102
+Q+ LI+ +D TIE++ +LDGA
Sbjct: 3 YQVRLINKKQDIDTTIEIDEETTILDGA 30
>pdb|1G9S|A Chain A, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9S|B Chain B, Crystal Structure Of A Complex Between E.Coli Hprt And Imp
pdb|1G9T|A Chain A, Crystal Structure Of E.Coli Hprt-Gmp Complex
pdb|1G9T|B Chain B, Crystal Structure Of E.Coli Hprt-Gmp Complex
Length = 182
Score = 26.9 bits (58), Expect = 7.6
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 574 VDSSEMAFKIAGSMAFKEASRAANPVLLEPMMKVEVEVPEEYMGDVIGD 622
+DS K+ ++ +E A LL+ + EV VP E++G I D
Sbjct: 106 IDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPD 154
>pdb|1BXN|I Chain I, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|J Chain J, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|K Chain K, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms.
pdb|1BXN|L Chain L, The Crystal Structure Of Rubisco From Alcaligenes
Eutrophus To 2.7 Angstroms
Length = 139
Score = 26.9 bits (58), Expect = 7.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 400 RMEFPEPVIHIAVEPKTKADQEKMGVALGKLAEEDPSFRVMTQEETGQTL 449
R FP I + T + + + ++P FR++ QEE G+TL
Sbjct: 72 RNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTL 121
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.316 0.136 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,056,668
Number of Sequences: 13198
Number of extensions: 180786
Number of successful extensions: 567
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 36
length of query: 692
length of database: 2,899,336
effective HSP length: 95
effective length of query: 597
effective length of database: 1,645,526
effective search space: 982379022
effective search space used: 982379022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)