BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645810|ref|NP_207987.1| ribosomal protein S7 (rps7)
[Helicobacter pylori 26695]
(155 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HUS| Ribosomal Protein S7 189 1e-49
pdb|1J5E|G Chain G, Structure Of The Thermus Thermophilus 3... 185 2e-48
pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 3... 185 2e-48
pdb|1RSS| Ribosomal Protein S7 From Thermus Thermophilus 179 2e-46
pdb|1FKA|G Chain G, Structure Of Functionally Activated Sma... 172 2e-44
pdb|1EG0|D Chain D, Fitting Of Components With Known Struct... 164 3e-42
pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Sma... 154 6e-39
pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archa... 55 4e-09
pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Prot... 29 0.21
pdb|1VLK| Structure Of Viral Interleukin-10 27 1.4
pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer... 26 2.3
pdb|1JBK|A Chain A, Crystal Structure Of The First Nuceloti... 25 3.0
pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator ... 25 3.0
pdb|1DRK| D-Ribose-Binding Protein Mutant With Ile 132 Re... 25 5.2
pdb|1DRJ| D-Ribose-Binding Protein Mutant With Gly 134 Re... 25 5.2
pdb|1YFM| Recombinant Yeast Fumarase 25 5.2
pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-... 25 5.2
pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Rep... 25 5.2
pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein... 25 5.2
pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.... 24 6.8
pdb|1ILK| Interleukin-10 24 6.8
pdb|1GDT|A Chain A, Crystal Structure Of A Site-Specific Re... 24 6.8
pdb|1A87| Colicin N 24 6.8
>pdb|1HUS| Ribosomal Protein S7
Length = 155
Score = 189 bits (480), Expect = 1e-49
Identities = 92/154 (59%), Positives = 121/154 (77%), Gaps = 2/154 (1%)
Query: 4 RKAPV--REVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVF 61
R+ PV R+VL DP+Y +K+VT+ INK+ DGKKS A+KI+Y AF+ I E++G+ EVF
Sbjct: 2 RRGPVAKRDVLPDPIYNSKLVTRLINKIXIDGKKSKAQKILYTAFDIIRERTGKDPXEVF 61
Query: 62 EKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLAN 121
E+AL+ V P++EVR+RRVGGA YQVPVEVR R+ SL +RW+++ R RNE+ +RLAN
Sbjct: 62 EQALKNVXPVLEVRARRVGGANYQVPVEVRPDRRVSLGLRWLVQYARLRNEKTXEERLAN 121
Query: 122 ELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW 155
E+ DAA++ GAA KK+ED HK AEANKAFAHYRW
Sbjct: 122 EIXDAANNTGAAVKKREDTHKXAEANKAFAHYRW 155
>pdb|1J5E|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1I94|G Chain G, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I96|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|1I95|G Chain G, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
Length = 155
Score = 185 bits (470), Expect = 2e-48
Identities = 90/154 (58%), Positives = 122/154 (78%)
Query: 2 RRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVF 61
RRR+A VR++ D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF
Sbjct: 2 RRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 61
Query: 62 EKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLAN 121
++A+E V+P +EVRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+
Sbjct: 62 KQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAH 121
Query: 122 ELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW 155
ELMDAA KG A KKKEDV +MAEAN+A+AHYRW
Sbjct: 122 ELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 155
>pdb|1FJG|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin And Paromomycin
pdb|1IBL|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1HR0|G Chain G, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNZ|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1IBM|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1IBK|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1HNW|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|G Chain G, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1JGQ|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1GIX|J Chain J, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1JGO|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|J Chain J, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
Length = 156
Score = 185 bits (470), Expect = 2e-48
Identities = 90/154 (58%), Positives = 122/154 (78%)
Query: 2 RRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVF 61
RRR+A VR++ D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF
Sbjct: 3 RRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 62
Query: 62 EKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLAN 121
++A+E V+P +EVRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+
Sbjct: 63 KQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAH 122
Query: 122 ELMDAASDKGAAFKKKEDVHKMAEANKAFAHYRW 155
ELMDAA KG A KKKEDV +MAEAN+A+AHYRW
Sbjct: 123 ELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW 156
>pdb|1RSS| Ribosomal Protein S7 From Thermus Thermophilus
Length = 151
Score = 179 bits (453), Expect = 2e-46
Identities = 87/150 (58%), Positives = 118/150 (78%)
Query: 6 APVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKAL 65
A VR++ D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF++A+
Sbjct: 2 AEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAV 61
Query: 66 ERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMD 125
E V+P +EVRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+ELMD
Sbjct: 62 ENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMD 121
Query: 126 AASDKGAAFKKKEDVHKMAEANKAFAHYRW 155
AA KG A KKKEDV +MAEAN+A+AHYRW
Sbjct: 122 AAEGKGGAVKKKEDVERMAEANRAYAHYRW 151
>pdb|1FKA|G Chain G, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
Length = 151
Score = 172 bits (435), Expect = 2e-44
Identities = 85/149 (57%), Positives = 117/149 (78%)
Query: 2 RRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVF 61
RRR+A VR++ D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF
Sbjct: 3 RRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 62
Query: 62 EKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLAN 121
++A+E V+P +EVRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+
Sbjct: 63 KQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAH 122
Query: 122 ELMDAASDKGAAFKKKEDVHKMAEANKAF 150
ELMDAA KG A KKKEDV +MAEAN+A+
Sbjct: 123 ELMDAAEGKGGAVKKKEDVERMAEANRAY 151
>pdb|1EG0|D Chain D, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 146
Score = 164 bits (416), Expect = 3e-42
Identities = 82/144 (56%), Positives = 112/144 (76%)
Query: 2 RRRKAPVREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVF 61
RRR+A VR++ D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF
Sbjct: 3 RRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVF 62
Query: 62 EKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLAN 121
++A+E V+P +EVRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+
Sbjct: 63 KQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAH 122
Query: 122 ELMDAASDKGAAFKKKEDVHKMAE 145
ELMDAA KG A KKKEDV +MAE
Sbjct: 123 ELMDAAEGKGGAVKKKEDVERMAE 146
>pdb|1DV4|G Chain G, Partial Structure Of 16s Rna Of The Small Ribosomal
Subunit From Thermus Thermophilus
pdb|1QD7|F Chain F, Partial Model For 30s Ribosomal Subunit
Length = 135
Score = 154 bits (388), Expect = 6e-39
Identities = 76/132 (57%), Positives = 103/132 (77%)
Query: 14 DPVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVE 73
D VYG+ +VT FINK+M DGKK++A +I Y A I+EK+G++ ++VF++A+E V+P +E
Sbjct: 4 DLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPRME 63
Query: 74 VRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAA 133
VRSRRVGGA YQVP+EV RQQSL++RW+++A +R ER R+A+ELMDAA KG A
Sbjct: 64 VRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRIAHELMDAAEGKGGA 123
Query: 134 FKKKEDVHKMAE 145
KKKEDV +MAE
Sbjct: 124 VKKKEDVERMAE 135
>pdb|1IQV|A Chain A, Crystal Structure Analysis Of The Archaebacterial
Ribosomal Protein S7
Length = 218
Score = 55.1 bits (131), Expect = 4e-09
Identities = 37/122 (30%), Positives = 69/122 (56%), Gaps = 5/122 (4%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVR 91
+ KK A +++ +AF IE+++G+ I+V A+E P + S GG Y V V++
Sbjct: 97 NSKKVRAYEVVKEAFKIIEKRTGKNPIQVLVWAIENAAPREDTTSVMFGGIRYHVAVDIS 156
Query: 92 ASRQQSLSIRWI-LEATRK--RNERMMVDRLANELMDAAS--DKGAAFKKKEDVHKMAEA 146
R+ +++R I L A+ K R + + LA E++ AA+ K A+ KK ++ ++AE+
Sbjct: 157 PLRRLDVALRNIALGASAKCYRTKMSFAEALAEEIILAANKDPKSYAYSKKLEIERIAES 216
Query: 147 NK 148
++
Sbjct: 217 SR 218
>pdb|1OSP|O Chain O, Crystal Structure Of Outer Surface Protein A Of Borrelia
Burgdorferi Complexed With A Murine Monoclonal Antibody
Fab
pdb|1FJ1|E Chain E, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
pdb|1FJ1|F Chain F, Lyme Disease Antigen Ospa In Complex With Neutralizing
Antibody Fab La-2
Length = 257
Score = 29.3 bits (64), Expect = 0.21
Identities = 17/36 (47%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALER 67
DGK V++K+ K + EEK EKG EV EK + R
Sbjct: 89 DGKTLVSKKVTSKDKSSTEEKFNEKG-EVSEKIITR 123
>pdb|1VLK| Structure Of Viral Interleukin-10
Length = 145
Score = 26.6 bits (57), Expect = 1.4
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 35 KSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSR 77
KS A + I AFNK++EK K + F+ + + + +++R
Sbjct: 103 KSKAVEQIKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTIKAR 145
>pdb|1LK3|A Chain A, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|B Chain B, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 160
Score = 25.8 bits (55), Expect = 2.3
Identities = 13/45 (28%), Positives = 24/45 (52%)
Query: 33 GKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSR 77
G KS A + + AFNK++EK K + F+ + + + ++ R
Sbjct: 115 GGKSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIR 159
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 25.4 bits (54), Expect = 3.0
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 85 QVPVEVRASRQQSLSIRWILEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMA 144
+VP ++ R +L + ++ + R E +RL L D A +G +++H M
Sbjct: 71 EVPEGLKGRRVLALDMGALVAGAKYRGE--FEERLKGVLNDLAKQEGNVILFIDELHTMV 128
Query: 145 EANKA 149
A KA
Sbjct: 129 GAGKA 133
>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus
Length = 263
Score = 25.4 bits (54), Expect = 3.0
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 8 VREVLGDPVYGNKVVTKFINKMMFDGKKSVAEKIIY-KAFNKIEEKSGEKGIEVFEKAL- 65
V E LG V G VV I + + K+ E I+ K I E + + K +
Sbjct: 156 VAERLGTKVLG--VVVNRITTLGIEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVV 213
Query: 66 ------ERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWILEATRKR 110
R +VE+ + GGA +VP EV+ +++ ++ +L R+R
Sbjct: 214 LRSPNSPAARAIVELANYIAGGAKKKVPAEVKEKKKEG-ALAKMLRIFRRR 263
>pdb|1DRK| D-Ribose-Binding Protein Mutant With Ile 132 Replaced By Thr And
Gly 134 Replaced By Ala (I132t,G134a)
Length = 271
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALE 66
DG+K+V + + ++ ++ G KG+E +K L+
Sbjct: 219 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253
>pdb|1DRJ| D-Ribose-Binding Protein Mutant With Gly 134 Replaced By Arg
(G134r) Complexed With Beta-D-Ribose
Length = 271
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALE 66
DG+K+V + + ++ ++ G KG+E +K L+
Sbjct: 219 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253
>pdb|1YFM| Recombinant Yeast Fumarase
Length = 488
Score = 24.6 bits (52), Expect = 5.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 40 KIIYKAFNKIEEKSGEKGIEVFEKALE 66
KI Y A +K+ + + +KGI + E ALE
Sbjct: 440 KIGYDAASKVAKNAHKKGITLKESALE 466
>pdb|2DRI| D-Ribose-Binding Protein Complexed With Beta-D-Ribose
pdb|1URP|A Chain A, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|B Chain B, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|C Chain C, D-Ribose-Binding Protein From Escherichia Coli
pdb|1URP|D Chain D, D-Ribose-Binding Protein From Escherichia Coli
Length = 271
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALE 66
DG+K+V + + ++ ++ G KG+E +K L+
Sbjct: 219 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253
>pdb|1DBP| D-Ribose-Binding Protein Mutant With Gly 72 Replaced By Asp (G72d)
Length = 271
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALE 66
DG+K+V + + ++ ++ G KG+E +K L+
Sbjct: 219 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253
>pdb|1BA2|A Chain A, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
pdb|1BA2|B Chain B, D67r Mutant Of D-Ribose-Binding Protein From Escherichia
Coli
Length = 271
Score = 24.6 bits (52), Expect = 5.2
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 32 DGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALE 66
DG+K+V + + ++ ++ G KG+E +K L+
Sbjct: 219 DGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253
>pdb|2ILK| Crystal Structure Of Human Interleukin-10 At 1.6 Angstroms
Resolution
pdb|1J7V|L Chain L, Human Il-10 IL-10r1 Complex
pdb|1INR| Cytokine Synthesis
Length = 160
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 35 KSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSR 77
KS A + + AFNK++EK K + F+ + + + ++ R
Sbjct: 117 KSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIR 159
>pdb|1ILK| Interleukin-10
Length = 151
Score = 24.3 bits (51), Expect = 6.8
Identities = 12/43 (27%), Positives = 23/43 (52%)
Query: 35 KSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEVRSR 77
KS A + + AFNK++EK K + F+ + + + ++ R
Sbjct: 108 KSKAVEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIR 150
>pdb|1GDT|A Chain A, Crystal Structure Of A Site-Specific Recombinase,
Gamma-Delta Resolvase Complexed With A 34 Bp Cleavage
Site
pdb|1GDT|B Chain B, Crystal Structure Of A Site-Specific Recombinase,
Gamma-Delta Resolvase Complexed With A 34 Bp Cleavage
Site
Length = 183
Score = 24.3 bits (51), Expect = 6.8
Identities = 24/112 (21%), Positives = 45/112 (39%), Gaps = 18/112 (16%)
Query: 53 SGEKGIEVFEKALERVRPLVEVRSRRVGGATYQVPVEVRASRQQSLSIRWI--------- 103
S KG+++ +E ++ + R+G T + ++ Q +SIR+I
Sbjct: 43 SDRKGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDDGISTDGE 102
Query: 104 --------LEATRKRNERMMVDRLANELMDAASDKGAAFKKKEDVHKMAEAN 147
L A + + +++R NE A KG F +K + + A N
Sbjct: 103 MGKMVVTILSAVAQAERQRILER-TNEGRQEAMAKGVVFGRKRKIDRDAVLN 153
>pdb|1A87| Colicin N
Length = 321
Score = 24.3 bits (51), Expect = 6.8
Identities = 37/137 (27%), Positives = 52/137 (37%), Gaps = 24/137 (17%)
Query: 15 PVYGNKVVTKFINKMMFDGKKSVAEKIIYKAFNKIEEKSGEKGIEVFEKALERVRPLVEV 74
P Y NK+V +F+++ + F K E++ EK E KA E V + +
Sbjct: 100 PKYNNKLVKRFVSQFLL--------------FRKEEKEKNEK--EALLKASELVSGMGDK 143
Query: 75 RSRRVGGATYQVPVEVR--ASRQQSLSIRWILEATRKRNERMMVDRLANELMDA-ASDKG 131
+G V EV +IR EA N+ LAN M SDK
Sbjct: 144 LGEYLGVKYKNVAKEVANDIKNFHGRNIRSYNEAMASLNK-----VLANPKMKVNKSDKD 198
Query: 132 AAFKKKEDVHKMAEANK 148
A + V+ ANK
Sbjct: 199 AIVNAWKQVNAKDMANK 215
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.132 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 780,054
Number of Sequences: 13198
Number of extensions: 26411
Number of successful extensions: 123
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 23
length of query: 155
length of database: 2,899,336
effective HSP length: 81
effective length of query: 74
effective length of database: 1,830,298
effective search space: 135442052
effective search space used: 135442052
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)