BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645813|ref|NP_207990.1| ribosomal protein L7/L12
(rpl7/l12) [Helicobacter pylori 26695]
(125 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein ... 134 4e-33
pdb|1CTF| L7(Slash)L12 50 S Ribosomal Protein (C-Terminal... 95 2e-21
pdb|1DD4|D Chain D, Crystal Structure Of Ribosomal Protein ... 37 7e-04
pdb|1DD3|C Chain C, Crystal Structure Of Ribosomal Protein ... 34 0.004
pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogen... 28 0.24
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Bioch... 27 0.70
pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase... 27 0.91
pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh... 26 1.2
pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspart... 26 1.6
pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna... 26 1.6
pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radic... 25 2.0
pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Rec... 25 2.0
pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain ... 25 2.0
pdb|2SCU|A Chain A, A Detailed Description Of The Structure... 25 2.6
pdb|1DOQ|A Chain A, The C-Terminal Domain Of The Rna Polyme... 25 2.6
pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa ... 25 2.6
pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E... 25 2.6
pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 3.5
pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Rec... 25 3.5
pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermo... 24 4.5
pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilu... 24 4.5
pdb|1K1G|A Chain A, Structural Basis For Recognition Of The... 24 5.9
pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyos... 24 5.9
pdb|1KTE| Crystal Structure Of Thioltransferase At 2.2 An... 24 5.9
pdb|1E9I|D Chain D, Enolase From E.Coli >gi|16975437|pdb|1E... 24 5.9
pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylor... 23 7.7
pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From... 23 7.7
pdb|2TPT| Structural And Theoretical Studies Suggest Doma... 23 7.7
pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylor... 23 7.7
>pdb|1DD3|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD3|B Chain B, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD4|A Chain A, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1DD4|B Chain B, Crystal Structure Of Ribosomal Protein L12 From Thermotoga
Maritima
pdb|1GIY|I Chain I, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
pdb|1GIY|J Chain J, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 128
Score = 134 bits (336), Expect = 4e-33
Identities = 79/125 (63%), Positives = 92/125 (73%), Gaps = 5/125 (4%)
Query: 6 EEVLEYIGSLSVLELSELVKMFEKKFGVSAT-PTVVAGAAVAGGAA-AESEEKTEFNVIL 63
+E++E I L+V EL+ELVK E KFGV+A P VA A VAG AA A EEKTEF+V+L
Sbjct: 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVAAAPVAGAAAGAAQEEKTEFDVVL 63
Query: 64 ADSGAEKIKVIKVVREITGLGLKEAKDATEKT---PHVLKEGVNKEEAETIKKKLEEVGA 120
G KI+VIKVVREITGLGLKEAKD EK V+K GV+KEEAE IKKKLEE GA
Sbjct: 64 KSFGQNKIQVIKVVREITGLGLKEAKDLVEKAGSPDAVIKSGVSKEEAEEIKKKLEEAGA 123
Query: 121 KVEVK 125
+VE+K
Sbjct: 124 EVELK 128
>pdb|1CTF| L7(Slash)L12 50 S Ribosomal Protein (C-Terminal Domain)
Length = 74
Score = 95.1 bits (235), Expect = 2e-21
Identities = 48/73 (65%), Positives = 57/73 (77%)
Query: 53 SEEKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIK 112
+EEKTEF+VIL +GA K+ VIK VR TGLGLKEAKD E P LKEGV+K++AE +K
Sbjct: 2 AEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEALK 61
Query: 113 KKLEEVGAKVEVK 125
K LEE GA+VEVK
Sbjct: 62 KALEEAGAEVEVK 74
>pdb|1DD4|D Chain D, Crystal Structure Of Ribosomal Protein L12 From
Thermotoga Maritima
pdb|1DD4|C Chain C, Crystal Structure Of Ribosomal Protein L12 From
Thermotoga Maritima
Length = 40
Score = 37.0 bits (84), Expect = 7e-04
Identities = 20/37 (54%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 6 EEVLEYIGSLSVLELSELVKMFEKKFGV-SATPTVVA 41
+E++E I L+V EL+ELVK E KFGV +A P VA
Sbjct: 4 DEIIEAIEKLTVSELAELVKKLEDKFGVTAAAPVAVA 40
>pdb|1DD3|C Chain C, Crystal Structure Of Ribosomal Protein L12 From
Thermotoga Maritima
pdb|1DD3|D Chain D, Crystal Structure Of Ribosomal Protein L12 From
Thermotoga Maritima
Length = 32
Score = 34.3 bits (77), Expect = 0.004
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 6 EEVLEYIGSLSVLELSELVKMFEKKFGVS 34
+E++E I L+V EL+ELVK E KFGV+
Sbjct: 4 DEIIEAIEKLTVSELAELVKKLEDKFGVT 32
>pdb|1GCO|A Chain A, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|B Chain B, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|E Chain E, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
pdb|1GCO|F Chain F, Crystal Structure Of Glucose Dehydrogenase Complexed With
Nad+
Length = 261
Score = 28.5 bits (62), Expect = 0.24
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 72 KVIKVVREITGLGLKEA-KDATEKTPHVLKEGVNKEEAETIKKKLEEVGAK 121
KV+ + TGLG A + ATEK V+ ++EA ++ +++++VG +
Sbjct: 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGE 58
>pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 26.9 bits (58), Expect = 0.70
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 3/44 (6%)
Query: 83 LGLKEAKDATEKTPHVLKEGVNKE---EAETIKKKLEEVGAKVE 123
LG+ + E+ + LK + +E + E IKK+LE+VG KV+
Sbjct: 57 LGVAGLNKSVEEFENELKNKLTEEAKNKMENIKKELEDVGFKVK 100
>pdb|1IW7|A Chain A, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|B Chain B, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|K Chain K, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
pdb|1IW7|L Chain L, Crystal Structure Of The Rna Polymerase Holoenzyme From
Thermus Thermophilus At 2.6a Resolution
Length = 315
Score = 26.6 bits (57), Expect = 0.91
Identities = 30/113 (26%), Positives = 50/113 (43%), Gaps = 24/113 (21%)
Query: 13 GSLSVLE-LSELVKMFEKKFGVSATPTVVAGAAVAGG----AAAESEEKTEFNV------ 61
GS++ LE L++ V++ + + P A AA A E EE+ + +
Sbjct: 203 GSVTPLEALNQAVEILREHLTYFSNPQAAAVAAPEEAKEPEAPPEQEEELDLPLEELGLS 262
Query: 62 -----ILADSGAEKIKVI-----KVVREITGLG---LKEAKDATEKTPHVLKE 101
L + G E ++ + K ++ I G+G L+E K+A EK LKE
Sbjct: 263 TRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 315
>pdb|2FFH|A Chain A, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|B Chain B, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
pdb|2FFH|C Chain C, The Signal Sequence Binding Protein Ffh From Thermus
Aquaticus
Length = 425
Score = 26.2 bits (56), Expect = 1.2
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 3 ISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVI 62
+ +EVL + +++ E + + F++K GV+ GGAA + T +
Sbjct: 209 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 268
Query: 63 LA-----DSGAEKIKVIKVVREITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKK 113
A G E ++ I G+G D V G+ E ++ K+
Sbjct: 269 FAGVSEKPEGLEPFYPERLAGRILGMG-----DVASLAEKVRAAGLEAEAPKSAKE 319
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase
: Trnaasp : Aspartyl-Adenylate Complex
Length = 585
Score = 25.8 bits (55), Expect = 1.6
Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 7/74 (9%)
Query: 15 LSVLELSELVKMFEKKFGVSATPTV-----VAGAAVAGGAAAESEEKTEFNVILADSGAE 69
+ + ++++L+K E F V A P VA V GGA+ ++ E+ + GA+
Sbjct: 290 MELTDVADLLKSVE--FAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAK 347
Query: 70 KIKVIKVVREITGL 83
+ IKV GL
Sbjct: 348 GLAYIKVNERAKGL 361
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|B Chain B, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1EQR|C Chain C, Crystal Structure Of Free Aspartyl-Trna Synthetase From
Escherichia Coli
pdb|1IL2|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
pdb|1IL2|B Chain B, Crystal Structure Of The E. Coli Aspartyl-Trna
Synthetase:yeast Trnaasp:aspartyl-Adenylate Complex
Length = 590
Score = 25.8 bits (55), Expect = 1.6
Identities = 21/74 (28%), Positives = 35/74 (46%), Gaps = 7/74 (9%)
Query: 15 LSVLELSELVKMFEKKFGVSATPTV-----VAGAAVAGGAAAESEEKTEFNVILADSGAE 69
+ + ++++L+K E F V A P VA V GGA+ ++ E+ + GA+
Sbjct: 290 MELTDVADLLKSVE--FAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAK 347
Query: 70 KIKVIKVVREITGL 83
+ IKV GL
Sbjct: 348 GLAYIKVNERAKGL 361
>pdb|1LQ7|A Chain A, De Novo Designed Protein Model Of Radical Enzymes
Length = 67
Score = 25.4 bits (54), Expect = 2.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 85 LKEAKDATEKTPHVLKEGVNKEEA----ETIKKKLEEVGAKVEVK 125
L+E A E+ L G EE E +KKK+EE+G EVK
Sbjct: 7 LEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGGEVK 51
>pdb|1FFH| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 294
Score = 25.4 bits (54), Expect = 2.0
Identities = 19/87 (21%), Positives = 35/87 (39%), Gaps = 5/87 (5%)
Query: 3 ISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVI 62
+ +EVL + +++ E + + F++K GV+ GGAA + T +
Sbjct: 208 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 267
Query: 63 LA-----DSGAEKIKVIKVVREITGLG 84
A G E ++ I G+G
Sbjct: 268 FAGVSEKPEGLEPFYPERLAGRILGMG 294
>pdb|1JPN|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPN|B Chain B, Gmppnp Complex Of Srp Gtpase Ng Domain
pdb|1JPJ|A Chain A, Gmppnp Complex Of Srp Gtpase Ng Domain
Length = 296
Score = 25.4 bits (54), Expect = 2.0
Identities = 19/87 (21%), Positives = 35/87 (39%), Gaps = 5/87 (5%)
Query: 3 ISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKTEFNVI 62
+ +EVL + +++ E + + F++K GV+ GGAA + T +
Sbjct: 209 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIY 268
Query: 63 LA-----DSGAEKIKVIKVVREITGLG 84
A G E ++ I G+G
Sbjct: 269 FAGVSEKPEGLEPFYPERLAGRILGMG 295
>pdb|2SCU|A Chain A, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|D Chain D, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
Length = 288
Score = 25.0 bits (53), Expect = 2.6
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 38 TVVAGAAVAGGAAAESEEKTEFNVI---LADSGAEKIKVIKVVREITGLGLKEAKDATEK 94
T + G G FN + +A +GA VI V + EA DA K
Sbjct: 32 TKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATA-SVIYVPAPFCKDSILEAIDAGIK 90
Query: 95 TPHVLKEGVNKEEAETIKKKLEEVGAKV 122
+ EG+ + T+K KL+E G ++
Sbjct: 91 LIITITEGIPTLDMLTVKVKLDEAGVRM 118
>pdb|1DOQ|A Chain A, The C-Terminal Domain Of The Rna Polymerase Alpha Subunit
From Thermus Thermophilus
Length = 69
Score = 25.0 bits (53), Expect = 2.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 63 LADSGAEKIKVI-----KVVREITGLG---LKEAKDATEKTPHVLKE 101
L + G E ++ + K ++ I G+G L+E K+A EK LKE
Sbjct: 23 LKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKKGFTLKE 69
>pdb|1SCU|A Chain A, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1SCU|D Chain D, Succinyl-Coa Synthetase (Succinate-Coa Ligase)
(Adp-Forming) (E.C.6.2.1.5)
pdb|1JKJ|A Chain A, E. Coli Scs
pdb|1JKJ|D Chain D, E. Coli Scs
pdb|1JLL|A Chain A, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|D Chain D, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 288
Score = 25.0 bits (53), Expect = 2.6
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 38 TVVAGAAVAGGAAAESEEKTEFNVI---LADSGAEKIKVIKVVREITGLGLKEAKDATEK 94
T + G G FN + +A +GA VI V + EA DA K
Sbjct: 32 TKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATA-SVIYVPAPFCKDSILEAIDAGIK 90
Query: 95 TPHVLKEGVNKEEAETIKKKLEEVGAKV 122
+ EG+ + T+K KL+E G ++
Sbjct: 91 LIITITEGIPTLDMLTVKVKLDEAGVRM 118
>pdb|1CQJ|A Chain A, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|D Chain D, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQI|A Chain A, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|D Chain D, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
Length = 286
Score = 25.0 bits (53), Expect = 2.6
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 38 TVVAGAAVAGGAAAESEEKTEFNVI---LADSGAEKIKVIKVVREITGLGLKEAKDATEK 94
T + G G FN + +A +GA VI V + EA DA K
Sbjct: 32 TKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATA-SVIYVPAPFCKDSILEAIDAGIK 90
Query: 95 TPHVLKEGVNKEEAETIKKKLEEVGAKV 122
+ EG+ + T+K KL+E G ++
Sbjct: 91 LIITITEGIPTLDMLTVKVKLDEAGVRM 118
>pdb|2NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
Length = 293
Score = 24.6 bits (52), Expect = 3.5
Identities = 13/55 (23%), Positives = 25/55 (44%)
Query: 3 ISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKT 57
+ +EVL + +++ E + + F++K GV+ GGAA + T
Sbjct: 208 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 262
>pdb|1NG1| N And Gtpase Domains Of The Signal Sequence Recognition Protein
Ffh From Thermus Aquaticus
pdb|3NG1|A Chain A, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
pdb|3NG1|B Chain B, N And Gtpase Domains Of The Signal Sequence Recognition
Protein Ffh From Thermus Aquaticus
Length = 294
Score = 24.6 bits (52), Expect = 3.5
Identities = 13/55 (23%), Positives = 25/55 (44%)
Query: 3 ISKEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGGAAAESEEKT 57
+ +EVL + +++ E + + F++K GV+ GGAA + T
Sbjct: 209 LGPDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVT 263
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|G Chain G, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|H Chain H, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|D Chain D, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 196
Score = 24.3 bits (51), Expect = 4.5
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 70 KIKVIKVVREITGLGLKEAKDATE 93
++++IK +RE TG G+ + K A E
Sbjct: 3 QMELIKKLREATGAGMMDVKRALE 26
>pdb|1H5Y|A Chain A, Hisf Protein From Pyrobaculum Aerophilum
pdb|1H5Y|B Chain B, Hisf Protein From Pyrobaculum Aerophilum
Length = 253
Score = 24.3 bits (51), Expect = 4.5
Identities = 17/71 (23%), Positives = 32/71 (44%), Gaps = 8/71 (11%)
Query: 22 ELVKMFEKKFGVSATPTVVAG--------AAVAGGAAAESEEKTEFNVILADSGAEKIKV 73
+LV + ++FG +T + V GG A + ++ + + GA +I +
Sbjct: 114 QLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILL 173
Query: 74 IKVVREITGLG 84
+ R+ TGLG
Sbjct: 174 TSIDRDGTGLG 184
>pdb|1K1G|A Chain A, Structural Basis For Recognition Of The Intron Branch Site
Rna By Splicing Factor 1
Length = 131
Score = 23.9 bits (50), Expect = 5.9
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 80 ITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLE 116
+T ++ K A E+ ++LK+G+ E + +K++
Sbjct: 78 VTANTMENVKKAVEQIRNILKQGIETPEDQNDLRKMQ 114
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 23.9 bits (50), Expect = 5.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 78 REITGLGLKEAKDATEKTPHVLKEGVNKEEAETIKKKLE 116
+ +T L K +E + KE +++E E IK+KLE
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066
>pdb|1KTE| Crystal Structure Of Thioltransferase At 2.2 Angstrom Resolution
Length = 105
Score = 23.9 bits (50), Expect = 5.9
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 5 KEEVLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAGAAVAGG 48
KE +LE++ + + +E+ ++ G P V G GG
Sbjct: 38 KEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGG 81
>pdb|1E9I|D Chain D, Enolase From E.Coli
pdb|1E9I|A Chain A, Enolase From E.Coli
pdb|1E9I|B Chain B, Enolase From E.Coli
pdb|1E9I|C Chain C, Enolase From E.Coli
Length = 431
Score = 23.9 bits (50), Expect = 5.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 98 VLKEGVNKEEAETIKKKLEEVGAKVE 123
+LKEG+ K A +I K ++G+ E
Sbjct: 325 ILKEGIEKGIANSILIKFNQIGSLTE 350
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 23.5 bits (49), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 8 VLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAG 42
+ EY+GS+ V ++++LV FGV + G
Sbjct: 419 ISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGG 453
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 23.5 bits (49), Expect = 7.7
Identities = 16/71 (22%), Positives = 35/71 (48%), Gaps = 4/71 (5%)
Query: 55 EKTEFNVILADSGAEKIKVIKVVREITGLGLKEAKDATEKT---PHVLKEGVNKEEAETI 111
++ +FN D + + ++ ++T LG K +K+ P + K+GV+ + +
Sbjct: 4 KEVKFNSDARDRMLKGVNILADAVKVT-LGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 112 KKKLEEVGAKV 122
K E +GA++
Sbjct: 63 SDKFENMGAQM 73
>pdb|2TPT| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1OTP| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|B Chain B, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1TPT| Thymidine Phosphorylase (E.C.2.4.2.4)
Length = 440
Score = 23.5 bits (49), Expect = 7.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 45 VAGGAAAESEEK-TEFNVILADSGAEKIKVIKVVREITG 82
VA GA + T+ N +LA S ++V + V+ +TG
Sbjct: 227 VANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTG 265
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 23.5 bits (49), Expect = 7.7
Identities = 11/35 (31%), Positives = 19/35 (53%)
Query: 8 VLEYIGSLSVLELSELVKMFEKKFGVSATPTVVAG 42
+ EY+GS+ V ++++LV FGV + G
Sbjct: 419 ISEYVGSVEVGKVADLVLWSPAFFGVKPNMIIKGG 453
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.306 0.127 0.312
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,660
Number of Sequences: 13198
Number of extensions: 20619
Number of successful extensions: 74
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 48
Number of HSP's gapped (non-prelim): 29
length of query: 125
length of database: 2,899,336
effective HSP length: 77
effective length of query: 48
effective length of database: 1,883,090
effective search space: 90388320
effective search space used: 90388320
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 49 (23.5 bits)