BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645814|ref|NP_207991.1| ribosomal protein L10
(rpl10) [Helicobacter pylori 26695]
(164 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophi... 30 0.18
pdb|1O0U|A Chain A, Crystal Structure Of Putative Glycerate... 25 4.5
pdb|2VSG|A Chain A, A Structural Motif In The Variant Surfa... 24 7.6
pdb|1GD5|A Chain A, Solution Structure Of The Px Domain Fro... 24 7.6
>pdb|1IM8|A Chain A, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
pdb|1IM8|B Chain B, Crystal Structure Of Yeco From Haemophilus Influenzae
(Hi0319), A Methyltransferase With A Bound S-
Adenosylhomocysteine
Length = 244
Score = 29.6 bits (65), Expect = 0.18
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 13 LVANLKSQFA---DAKALLICDYKGLSVRKLEALRNKARNQGIKVQVIKNTLAHIAMKET 69
++ N QF D ALL Y+GL+ + L K R + K+ + L H +
Sbjct: 131 VILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRAN 190
Query: 70 GYSDLDLKETNVFL 83
GYS+L++ + L
Sbjct: 191 GYSELEVSQKRTAL 204
>pdb|1O0U|A Chain A, Crystal Structure Of Putative Glycerate Kinase (Tm1585)
From Thermotoga Maritima At 2.95 A Resolution
pdb|1O0U|B Chain B, Crystal Structure Of Putative Glycerate Kinase (Tm1585)
From Thermotoga Maritima At 2.95 A Resolution
Length = 429
Score = 25.0 bits (53), Expect = 4.5
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 11/87 (12%)
Query: 4 QHQRQHKVELVANLKSQFADAKALLICDYKGLSVRKLE-ALRNKARNQGIKVQVIKNTLA 62
+H ++ L+ N++ +AK+L KG + + +L +AR G + I
Sbjct: 250 KHLSNVEIHLIGNVQKVCDEAKSL--AKEKGFNAEIITTSLDCEAREAGRFIASI----- 302
Query: 63 HIAMKETGYSDLDLKETNVFLWGGDQI 89
MKE + D LK+ ++GG+ +
Sbjct: 303 ---MKEVKFKDRPLKKPAALIFGGETV 326
>pdb|2VSG|A Chain A, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
pdb|2VSG|B Chain B, A Structural Motif In The Variant Surface Glycoproteins Of
Trypanosoma Brucei
Length = 358
Score = 24.3 bits (51), Expect = 7.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 10 KVELVANLKSQFADAKA--LLICDYKGLSVRKLEALRNKARNQGIKVQVIKNTLAHIAMK 67
K +L A+ + +D K L +Y G + +EAL NK +K + +K K
Sbjct: 281 KFQLAASTGKKTSDYKEDENLKTEYFGKTESNIEALWNK-----VKEEKVKGADPEDPSK 335
Query: 68 ETGYSDLDLKE 78
E+ SDL+ +E
Sbjct: 336 ESKISDLNTEE 346
>pdb|1GD5|A Chain A, Solution Structure Of The Px Domain From Human P47phox
Nadph Oxidase
Length = 130
Score = 24.3 bits (51), Expect = 7.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 95 VFDFQKEHKDHFVLKAGLFDKESVSVAHVEA 125
+++F K K+ F ++AG + E+ + H+ A
Sbjct: 49 IYEFHKTLKEMFPIEAGAINPENRIIPHLPA 79
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 820,598
Number of Sequences: 13198
Number of extensions: 27852
Number of successful extensions: 41
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 4
length of query: 164
length of database: 2,899,336
effective HSP length: 81
effective length of query: 83
effective length of database: 1,830,298
effective search space: 151914734
effective search space used: 151914734
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)