BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645815|ref|NP_207992.1| ribosomal protein L1 (rpl1)
[Helicobacter pylori 26695]
(234 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1EG0|N Chain N, Fitting Of Components With Known Struct... 232 2e-62
pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.... 232 2e-62
pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cr... 230 9e-62
pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Rep... 230 9e-62
pdb|1DWU|A Chain A, Ribosomal Protein L1 >gi|12084595|pdb|1... 82 7e-17
pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein ... 73 3e-14
pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studie... 28 1.2
pdb|1WKD| Trna-Guanine Transglycosylase 28 1.2
pdb|1WKE| Trna-Guanine Transglycosylase 28 1.2
pdb|1WKF| Trna-Guanine Transglycosylase 28 1.2
pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Trans... 28 1.2
pdb|1APS| Acylphosphatase (E.C.3.6.1.7) (Nmr, 5 Structures) 28 1.2
pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of ... 27 2.7
pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Gluc... 26 3.5
pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlam... 26 3.5
pdb|1E2Z|A Chain A, Q158l Mutant Of Cytochrome F From Chlam... 26 4.6
pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With ... 25 5.9
pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhar... 25 5.9
pdb|1E2V|A Chain A, N153q Mutant Of Cytochrome F From Chlam... 25 5.9
pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve T... 25 5.9
pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltr... 25 5.9
pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruv... 25 7.8
pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Pr... 25 7.8
>pdb|1EG0|N Chain N, Fitting Of Components With Known Structure Into An 11.5 A
Cryo-Em Map Of The E.Coli 70s Ribosome
Length = 229
Score = 232 bits (592), Expect = 2e-62
Identities = 111/221 (50%), Positives = 156/221 (70%), Gaps = 1/221 (0%)
Query: 7 KRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVL 66
KR L K+ +K Y +++ +VK LA+AKFDETVEV +LG+DPR +DQ VRG V L
Sbjct: 6 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 65
Query: 67 PHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG 126
PHG GK+VRV AK K EA+ AGAD VGG+++ ++I +G +DFD V+ATPD+M VG
Sbjct: 66 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 125
Query: 127 -KVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEK 185
K+GRILGP+GL+PNPK GTV +I + + K+G++ FR DK G +HAP+GKASFP EK
Sbjct: 126 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEK 185
Query: 186 IKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLD 226
+ +N+ ++ + KP AKG ++R+ ++ TM PSV ++
Sbjct: 186 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 226
>pdb|1GIY|C Chain C, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1giy, Contains The 50s Ribosome Subunit. The
30s Ribosome Subunit, Three Trna, And Mrna Molecules Are
In The File 1gix
Length = 228
Score = 232 bits (592), Expect = 2e-62
Identities = 111/221 (50%), Positives = 156/221 (70%), Gaps = 1/221 (0%)
Query: 7 KRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVL 66
KR L K+ +K Y +++ +VK LA+AKFDETVEV +LG+DPR +DQ VRG V L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 67 PHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG 126
PHG GK+VRV AK K EA+ AGAD VGG+++ ++I +G +DFD V+ATPD+M VG
Sbjct: 65 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 124
Query: 127 -KVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEK 185
K+GRILGP+GL+PNPK GTV +I + + K+G++ FR DK G +HAP+GKASFP EK
Sbjct: 125 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEK 184
Query: 186 IKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLD 226
+ +N+ ++ + KP AKG ++R+ ++ TM PSV ++
Sbjct: 185 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 225
>pdb|487D|H Chain H, Seven Ribosomal Proteins Fitted To A Cryo-Electron
Microscopic Map Of The Large 50s Subunit At 7.5
Angstroms Resolution
Length = 224
Score = 230 bits (587), Expect = 9e-62
Identities = 110/221 (49%), Positives = 155/221 (69%), Gaps = 1/221 (0%)
Query: 7 KRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVL 66
KR L K+ +K Y +++ +VK LA+AKFDETVEV +LG+DPR +DQ VRG V L
Sbjct: 1 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 60
Query: 67 PHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG 126
PHG GK+VRV AK K EA+ AGAD VGG+++ ++I +G +DFD V+ATPD+M VG
Sbjct: 61 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 120
Query: 127 -KVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEK 185
K+GRILGP+GL+PNPK GTV +I + + K+G++ FR DK G +HAP+GKA FP EK
Sbjct: 121 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 180
Query: 186 IKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLD 226
+ +N+ ++ + KP AKG ++R+ ++ TM PSV ++
Sbjct: 181 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 221
>pdb|1AD2| Ribosomal Protein L1 Mutant With Serine 179 Replaced By Cysteine
Length = 228
Score = 230 bits (587), Expect = 9e-62
Identities = 110/221 (49%), Positives = 155/221 (69%), Gaps = 1/221 (0%)
Query: 7 KRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVL 66
KR L K+ +K Y +++ +VK LA+AKFDETVEV +LG+DPR +DQ VRG V L
Sbjct: 5 KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSL 64
Query: 67 PHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG 126
PHG GK+VRV AK K EA+ AGAD VGG+++ ++I +G +DFD V+ATPD+M VG
Sbjct: 65 PHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVG 124
Query: 127 -KVGRILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEK 185
K+GRILGP+GL+PNPK GTV +I + + K+G++ FR DK G +HAP+GKA FP EK
Sbjct: 125 SKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEK 184
Query: 186 IKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVSLD 226
+ +N+ ++ + KP AKG ++R+ ++ TM PSV ++
Sbjct: 185 LADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRIN 225
>pdb|1DWU|A Chain A, Ribosomal Protein L1
pdb|1DWU|B Chain B, Ribosomal Protein L1
Length = 213
Score = 81.6 bits (200), Expect = 7e-17
Identities = 62/211 (29%), Positives = 107/211 (50%), Gaps = 16/211 (7%)
Query: 26 QGVEVVKSLASAK-FDETVEVALRLG-VDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDI 83
+ V+ +SLA + F +++++ + L +D + ++ VVLP+G GK+ ++AV AK
Sbjct: 8 KAVKEARSLAKPRNFTQSLDLIINLKELDLSRPENRLKEQVVLPNGRGKEPKIAVIAKGD 67
Query: 84 KQDEAKNAGADVVGGDDLAEEIKNGRI------DFDMVIATPDMMAVVGK-VGRILGPKG 136
+A+ G V+ D+L E KN ++ + D IA DMM +VGK +G +LGP+G
Sbjct: 68 LAAQAEEMGLTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGPVLGPRG 127
Query: 137 LMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKT 196
MP P ++ V K V K H +G +E++ EN+ ++ T
Sbjct: 128 KMPQPVPANA--NLTPLVERLKK-TVLINTRDKPLFHVLVGNEKMSDEELAENIEAILNT 184
Query: 197 INRLKPSSAKGKY-IRNAALSLTMSPSVSLD 226
++R KG Y +++A LTM P ++
Sbjct: 185 VSR---KYEKGLYHVKSAYTKLTMGPPAQIE 212
>pdb|1CJS|A Chain A, Crystal Structure Of Ribosomal Protein L1 From
Methanococcus Jannaschii
Length = 219
Score = 72.8 bits (177), Expect = 3e-14
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 16/214 (7%)
Query: 26 QGVEVVKSLASAK-FDETVE-VALRLGVDPRHADQMVRGAVVLPHGTGKKVRVAVFAKDI 83
Q V+ + LA + F ++ E +A +D R + ++ VVLPHG GK+ ++AV
Sbjct: 8 QAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGD 67
Query: 84 KQDEAKNAGADVVGGDDLAEEIKNGR------IDFDMVIATPDMMAVVGK-VGRILGPKG 136
+A+ G V+ +++ E KN R D IA D+M ++G+ +G ILGP+G
Sbjct: 68 LAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRG 127
Query: 137 LMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKT 196
MP P + K + V K +G +E+I +N +
Sbjct: 128 KMPKPVPANANI---KPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDN---IEAV 181
Query: 197 INRLKPSSAKGKY-IRNAALSLTMSPSVSLDAQE 229
+N + KG Y I++A + LTM P+V + ++
Sbjct: 182 LNVVAKKYEKGLYHIKDAYVKLTMGPAVKVKKEK 215
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna-Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 27.7 bits (60), Expect = 1.2
Identities = 25/117 (21%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Query: 2 AKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVR 61
AK+ + + +N +G++QG V ++L D E+ D
Sbjct: 179 AKRSRDAFDSRKEQAENAALFGIQQG-SVFENLRQQSADALAEIGF---------DGYAV 228
Query: 62 GAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIAT 118
G + + G + RV F+ + D+ + V DD+ ++ G FD V+ T
Sbjct: 229 GGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPT 285
>pdb|1WKD| Trna-Guanine Transglycosylase
Length = 386
Score = 27.7 bits (60), Expect = 1.2
Identities = 25/117 (21%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Query: 2 AKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVR 61
AK+ + + +N +G++QG V ++L D E+ D
Sbjct: 179 AKRSRDAFDSRKEQAENAALFGIQQG-SVFENLRQQSADALAEIGF---------DGYAV 228
Query: 62 GAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIAT 118
G + + G + RV F+ + D+ + V DD+ ++ G FD V+ T
Sbjct: 229 GGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPT 285
>pdb|1WKE| Trna-Guanine Transglycosylase
Length = 386
Score = 27.7 bits (60), Expect = 1.2
Identities = 25/117 (21%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Query: 2 AKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVR 61
AK+ + + +N +G++QG V ++L D E+ D
Sbjct: 179 AKRSRDAFDSRKEQAENAALFGIQQG-SVFENLRQQSADALAEIGF---------DGYAV 228
Query: 62 GAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIAT 118
G + + G + RV F+ + D+ + V DD+ ++ G FD V+ T
Sbjct: 229 GGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPT 285
>pdb|1WKF| Trna-Guanine Transglycosylase
Length = 386
Score = 27.7 bits (60), Expect = 1.2
Identities = 25/117 (21%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Query: 2 AKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVR 61
AK+ + + +N +G++QG V ++L D E+ D
Sbjct: 179 AKRSRDAFDSRKEQAENAALFGIQQG-SVFENLRQQSADALAEIGF---------DGYAV 228
Query: 62 GAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIAT 118
G + + G + RV F+ + D+ + V DD+ ++ G FD V+ T
Sbjct: 229 GGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPT 285
>pdb|1K4G|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With 2,6-Diamino-8-Propylsulfanylmethyl-3h-
Quinazoline-4-One
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1PUD| Trna-Guanine Transglycosylase
pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
Length = 386
Score = 27.7 bits (60), Expect = 1.2
Identities = 25/117 (21%), Positives = 46/117 (38%), Gaps = 10/117 (8%)
Query: 2 AKKVFKRLEKLFSKIQNDKAYGVEQGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVR 61
AK+ + + +N +G++QG V ++L D E+ D
Sbjct: 179 AKRSRDAFDSRKEQAENAALFGIQQG-SVFENLRQQSADALAEIGF---------DGYAV 228
Query: 62 GAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIAT 118
G + + G + RV F+ + D+ + V DD+ ++ G FD V+ T
Sbjct: 229 GGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPT 285
>pdb|1APS| Acylphosphatase (E.C.3.6.1.7) (Nmr, 5 Structures)
Length = 98
Score = 27.7 bits (60), Expect = 1.2
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 12/80 (15%)
Query: 130 RILGPKGLMPNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKEN 189
R +G G + N GTVT GQV +K ++ + + K P +I
Sbjct: 31 RKIGVVGWVKNTSKGTVT------------GQVQGPEEKVNSMKSWLSKVGSPSSRIDRT 78
Query: 190 MLELVKTINRLKPSSAKGKY 209
KTI++L+ S+ +Y
Sbjct: 79 NFSNEKTISKLEYSNFSVRY 98
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 26.6 bits (57), Expect = 2.7
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 83 IKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPK 142
+ +D+ K ADV G D+ EE+ + + P +G G+I PKG++
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEV----AELVEYLREPSRFQKLG--GKI--PKGVLMVGP 53
Query: 143 TGTVTMDIAKAVS 155
GT +AKA++
Sbjct: 54 PGTGKTLLAKAIA 66
>pdb|1J8V|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4'-Nitrophenyl 3i-
Thiolaminaritrioside
pdb|1IEX|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 4i,4iii,4v-S-
Trithiocellohexaose
pdb|1EX1|A Chain A, Beta-D-Glucan Exohydrolase From Barley
pdb|1IEW|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With 2-Deoxy-2-Fluoro-Alpha-D-
Glucoside
pdb|1IEQ|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1
pdb|1IEV|A Chain A, Crystal Structure Of Barley Beta-D-Glucan Glucohydrolase
Isoenzyme Exo1 In Complex With Cyclohexitol
Length = 605
Score = 26.2 bits (56), Expect = 3.5
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 29 EVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLPHGTG 71
++V A + + + G+D H V GA + PH G
Sbjct: 72 DMVDGFQKACMSTRLGIPMIYGIDAVHGQNNVYGATIFPHNVG 114
>pdb|1E2W|A Chain A, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2W|B Chain B, N168f Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 26.2 bits (56), Expect = 3.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 71 GKKVRVAVF-AKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVG 129
GKK ++ A + A A ++ GG +++ E NG + D + A PD++ G+
Sbjct: 163 GKKSNFTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVKEGQT- 221
Query: 130 RILGPKGLMPNPKTG 144
+ + L NP G
Sbjct: 222 -VQADQPLTNNPNVG 235
>pdb|1E2Z|A Chain A, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2Z|B Chain B, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2Z|C Chain C, Q158l Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 25.8 bits (55), Expect = 4.6
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 66 LPHGTGKKVRVAVF-AKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAV 124
L + GKK ++ A + A A ++ GG +++ E NG + D + A PD++
Sbjct: 158 LVYPDGKKSNNTIYNASAAGKIVAITALSEKKGGFEVSIEKANGEVVVDKIPAGPDLIVK 217
Query: 125 VGKVGRILGPKGLMPNPKTG 144
G+ + + L NP G
Sbjct: 218 EGQT--VQADQPLTNNPNVG 235
>pdb|1PJC|A Chain A, L-Alanine Dehydrogenase Complexed With Nad
pdb|1SAY|A Chain A, L-Alanine Dehydrogenase Complexed With Pyruvate
pdb|1PJB|A Chain A, L-Alanine Dehydrogenase
Length = 361
Score = 25.4 bits (54), Expect = 5.9
Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 3/48 (6%)
Query: 104 EIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTGTVTMDIA 151
EI+ + D++I + V G+ IL P L+ +TG+V +D+A
Sbjct: 223 EIETAVAEADLLIGA---VLVPGRRAPILVPASLVEQMRTGSVIVDVA 267
>pdb|1CFM|A Chain A, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|B Chain B, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1CFM|C Chain C, Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|A Chain A, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|B Chain B, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
pdb|1EWH|C Chain C, Structure Of Cytochrome F From Chlamydomonas Reinhardtii
Length = 251
Score = 25.4 bits (54), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 97 GGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTG 144
GG +++ E NG + D + A PD++ G+ + + L NP G
Sbjct: 190 GGFEVSIEKANGEVVVDKIPAGPDLIVKEGQT--VQADQPLTNNPNVG 235
>pdb|1E2V|A Chain A, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2V|B Chain B, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
pdb|1E2V|C Chain C, N153q Mutant Of Cytochrome F From Chlamydomonas
Reinhardtii
Length = 251
Score = 25.4 bits (54), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (49%), Gaps = 2/48 (4%)
Query: 97 GGDDLAEEIKNGRIDFDMVIATPDMMAVVGKVGRILGPKGLMPNPKTG 144
GG +++ E NG + D + A PD++ G+ + + L NP G
Sbjct: 190 GGFEVSIEKANGEVVVDKIPAGPDLIVKEGQT--VQADQPLTNNPNVG 235
>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of
Hrs, A Protein Involved In Membrane Trafficking And
Signal Transduction
Length = 220
Score = 25.4 bits (54), Expect = 5.9
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 139 PNPKTGTVTMDIAKAVSNAKSGQVNFRVDKKGNVHAPIG-KASFPEEKIKENMLELVKTI 197
PNP + ++ + +++ V+ V K N S P E +++ MLELV+T
Sbjct: 54 PNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTW 113
Query: 198 NRLKPSSAKGKYIRN 212
SS K + I++
Sbjct: 114 AYAFRSSDKYQAIKD 128
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 25.4 bits (54), Expect = 5.9
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
Query: 57 DQMVRGAVVLPHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAE----EIKNGRIDF 112
DQ+ GA L G+G + A FA+ + V+G D + E + N R D
Sbjct: 73 DQLHEGAKALDVGSGSGILTACFARMV------GCTGKVIGIDHIKELVDDSVNNVRKDD 126
Query: 113 DMVIATPDMMAVVG 126
++++ + VVG
Sbjct: 127 PTLLSSGRVQLVVG 140
>pdb|1FIY| Three-Dimensional Structure Of Phosphoenolpyruvate Carboxylase
From Escherichia Coli At 2.8 A Resolution
pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
Length = 883
Score = 25.0 bits (53), Expect = 7.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 111 DFDMVIATPDMMAVVGKVGRILGPKGLMPN 140
+ MV ATP+++A+VG+ G + LM N
Sbjct: 289 ELSMVEATPELLALVGEEGAAEPYRYLMKN 318
>pdb|1QU9|A Chain A, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|B Chain B, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
pdb|1QU9|C Chain C, 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
Length = 128
Score = 25.0 bits (53), Expect = 7.8
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 116 IATPDMMAVVGK------VGRILGPKGLMP-NPKTGTVTMDIA 151
IAT + A +G +G ++ G +P NPKTG V D+A
Sbjct: 5 IATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPADVA 47
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.314 0.133 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,272,877
Number of Sequences: 13198
Number of extensions: 52502
Number of successful extensions: 118
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 23
length of query: 234
length of database: 2,899,336
effective HSP length: 85
effective length of query: 149
effective length of database: 1,777,506
effective search space: 264848394
effective search space used: 264848394
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)