BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645817|ref|NP_207994.1| transcription termination
factor NusG (nusG) [Helicobacter pylori 26695]
(176 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosph... 27 1.0
pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1)... 27 1.0
pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant... 27 1.0
pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO 27 1.3
pdb|1G73|A Chain A, Crystal Structure Of Smac Bound To Xiap... 27 1.3
pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Comp... 26 2.9
pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mi... 26 2.9
pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenas... 26 2.9
pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehyd... 25 3.8
pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase D... 25 3.8
pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhyd... 25 3.8
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Comple... 25 6.5
pdb|1MFH|A Chain A, The Structure Of Bovine B-Lactoglobulin... 25 6.5
pdb|1BEB|A Chain A, Bovine Beta-Lactoglobulin, Lattice X >g... 25 6.5
pdb|1GX8|A Chain A, Bovine Beta-Lactoglobulin Complexed Wit... 25 6.5
pdb|1CJ5|A Chain A, Bovine Beta-Lactoglobulin A >gi|7245834... 25 6.5
pdb|1DNV| Parvovirus (Densovirus) From Galleria Mellonella 24 8.5
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase:
The Role Of Histidine-95
Length = 247
Score = 27.3 bits (59), Expect = 1.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 11 SGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVS----KKSKTKVTERSLY 61
+GS+QS+K+ +E L N +I + ++ +I P ++ S KK + V ++ Y
Sbjct: 13 NGSKQSIKEIVERL-NTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAY 66
>pdb|7TIM|A Chain A, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|7TIM|B Chain B, Triosephosphate Isomerase (E.C.5.3.1.1) Complex With
Phosphoglycolohydroxamate
pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5
Length = 247
Score = 27.3 bits (59), Expect = 1.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 11 SGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVS----KKSKTKVTERSLY 61
+GS+QS+K+ +E L N +I + ++ +I P ++ S KK + V ++ Y
Sbjct: 13 NGSKQSIKEIVERL-NTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAY 66
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 27.3 bits (59), Expect = 1.0
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 11 SGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVS----KKSKTKVTERSLY 61
+GS+QS+K+ +E L N +I + ++ +I P ++ S KK + V ++ Y
Sbjct: 14 NGSKQSIKEIVERL-NTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAY 67
>pdb|1FEW|A Chain A, Crystal Structure Of SmacDIABLO
Length = 184
Score = 26.9 bits (58), Expect = 1.3
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 13 SEQSVKKAIENLANDHNI--RDRIQEIIVPTEDIIEVSKKSKTKVTERSL 60
SE + + A + A+ +I R+ IQ + + E++ ++S+K++TK+ E +
Sbjct: 109 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQI 158
>pdb|1G73|A Chain A, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
pdb|1G73|B Chain B, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain
Length = 162
Score = 26.9 bits (58), Expect = 1.3
Identities = 14/50 (28%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 13 SEQSVKKAIENLANDHNI--RDRIQEIIVPTEDIIEVSKKSKTKVTERSL 60
SE + + A + A+ +I R+ IQ + + E++ ++S+K++TK+ E +
Sbjct: 109 SEMAAEAAYQTGADQASITARNHIQLVKLQVEEVHQLSRKAETKLAEAQI 158
>pdb|1HYR|C Chain C, Crystal Structure Of Human Mica In Complex With Natural
Killer Cell Receptor Nkg2d
Length = 275
Score = 25.8 bits (55), Expect = 2.9
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 11 SGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVD 70
+G+ + ++ + ++ + +QEI V E+ + + T+ ++ Y G +F+ +
Sbjct: 68 TGNGKDLRMTLAHIKDQKEGLHSLQEIRV-----CEIHEDNSTRSSQHFYYDGELFLSQN 122
Query: 71 LDTVLWHKIQS 81
L+T W QS
Sbjct: 123 LETKEWTMPQS 133
>pdb|1B3J|A Chain A, Structure Of The Mhc Class I Homolog Mic-A, A Gammadelta T
Cell Ligand
Length = 274
Score = 25.8 bits (55), Expect = 2.9
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 11 SGSEQSVKKAIENLANDHNIRDRIQEIIVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVD 70
+G+ + ++ + ++ + +QEI V E+ + + T+ ++ Y G +F+ +
Sbjct: 67 TGNGKDLRMTLAHIKDQKEGLHSLQEIRV-----CEIHEDNSTRSSQHFYYDGELFLSQN 121
Query: 71 LDTVLWHKIQS 81
L+T W QS
Sbjct: 122 LETKEWTMPQS 132
>pdb|3DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|3DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nad+
pdb|4DBV|O Chain O, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|P Chain P, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|Q Chain Q, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
pdb|4DBV|R Chain R, Glyceraldehyde-3-Phosphate Dehydrogenase Mutant With Leu
33 Replaced By Thr, Thr 34 Replaced By Gly, Asp 36
Replaced By Gly, Leu 187 Replaced By Ala, And Pro 188
Replaced By Ser Complexed With Nadp+
Length = 334
Score = 25.8 bits (55), Expect = 2.9
Identities = 15/37 (40%), Positives = 20/37 (53%)
Query: 126 EVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRN 162
EVV V + AN A + +YD H +L VS+ G N
Sbjct: 27 EVVAVNDTGGANTLAHLLKYDSVHGRLDAEVSVNGNN 63
>pdb|1GD1|O Chain O, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|P Chain P, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|Q Chain Q, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|1GD1|R Chain R, holo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|O Chain O, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|P Chain P, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|Q Chain Q, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
pdb|2GD1|R Chain R, apo-D-Glyceraldehyde-3-Phosphate Dehydrogenase
(E.C.1.2.1.12)
Length = 334
Score = 25.4 bits (54), Expect = 3.8
Identities = 15/37 (40%), Positives = 20/37 (53%)
Query: 126 EVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRN 162
EVV V + AN A + +YD H +L VS+ G N
Sbjct: 27 EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNN 63
>pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase Domain Iii At 1.2
Angstroms Resolution
Length = 184
Score = 25.4 bits (54), Expect = 3.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 38 IVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTP 97
I+ ++EV K + V +RSL GY + D +++K P + +G+ KK
Sbjct: 121 IIAGMPVLEVWKSKQVIVMKRSLGVGYAAV----DNPIFYK----PNTAMLLGDAKKTCD 172
Query: 98 LSEADIGHILEK 109
+A + +K
Sbjct: 173 ALQAKVRESYQK 184
>pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhydrogenase Domain Iii
With Bound Nadp
pdb|1DJL|B Chain B, The Crystal Structure Of Human Transhydrogenase Domain Iii
With Bound Nadp
Length = 207
Score = 25.4 bits (54), Expect = 3.8
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 8/72 (11%)
Query: 38 IVPTEDIIEVSKKSKTKVTERSLYPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTP 97
I+ ++EV K + V +RSL GY + D +++K P + +G+ KK
Sbjct: 144 IIAGMPVLEVWKSKQVIVMKRSLGVGYAAV----DNPIFYK----PNTAMLLGDAKKTCD 195
Query: 98 LSEADIGHILEK 109
+A + +K
Sbjct: 196 ALQAKVRESYQK 207
>pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
Length = 203
Score = 24.6 bits (52), Expect = 6.5
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 100 EADIGHILEKMNNRAAPKPKIFFEQGEVVRVVEGPFANFTAT-VEEYDV 147
E+ I + + A +P ++F G + + +ANF T V++Y V
Sbjct: 48 ESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTV 96
>pdb|1MFH|A Chain A, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|B Chain B, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|C Chain C, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1MFH|D Chain D, The Structure Of Bovine B-Lactoglobulin A In Crystals
Grown At Very Low Ionic Strength.
pdb|1BSO|A Chain A, 12-Bromododecanoic Acid Binds Inside The Calyx Of Bovine
Beta-Lactoglobulin
pdb|1BSY| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 7.1
pdb|2BLG| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 8.2
pdb|3BLG| Structural Basis Of The Tanford Transition Of Bovine
Beta-Lactoglobulin From Crystal Structures At Three Ph
Values; Ph 6.2
pdb|1QG5|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoform A)
Length = 162
Score = 24.6 bits (52), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 91 ENKKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRV 130
E KPTP E D+ +L+K N + KI E+ ++ V
Sbjct: 44 EELKPTP--EGDLEILLQKWENDECAQKKIIAEKTKIPAV 81
>pdb|1BEB|A Chain A, Bovine Beta-Lactoglobulin, Lattice X
pdb|1BEB|B Chain B, Bovine Beta-Lactoglobulin, Lattice X
Length = 162
Score = 24.6 bits (52), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 91 ENKKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRV 130
E KPTP E D+ +L+K N + KI E+ ++ V
Sbjct: 44 EELKPTP--EGDLEILLQKWENGECAQKKIIAEKTKIPAV 81
>pdb|1GX8|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol, Trigonal
Lattice Z
pdb|1GX9|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinoic Acid,
Trigonal Lattice Z
pdb|1GXA|A Chain A, Bovine Beta-Lactoglobulin Complexed With Retinol And
Palmitic Acid, Trigonal Lattice Z
pdb|1BSQ|A Chain A, Structural And Functional Consequences Of Point Mutations
Of Variants A And B Of Bovine Beta-Lactoglobulin
pdb|1B0O| Bovine Beta-Lactoglobulin Complexed With Palmitate, Lattice Z
pdb|1B8E|A Chain A, High Resolution Crystal Structure Of The Bovine Beta-
Lactoglobulin (Isoforms A And B) In Orthorombic Space
Group
Length = 162
Score = 24.6 bits (52), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 91 ENKKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRV 130
E KPTP E D+ +L+K N + KI E+ ++ V
Sbjct: 44 EELKPTP--EGDLEILLQKWENGECAQKKIIAEKTKIPAV 81
>pdb|1CJ5|A Chain A, Bovine Beta-Lactoglobulin A
pdb|1DV9|A Chain A, Structural Changes Accompanying Ph-Induced Dissociation Of
The B-Lactoglobulin Dimer
Length = 162
Score = 24.6 bits (52), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 91 ENKKPTPLSEADIGHILEKMNNRAAPKPKIFFEQGEVVRV 130
E KPTP E D+ +L+K N + KI E+ ++ V
Sbjct: 44 EELKPTP--EGDLEILLQKWENDECAQKKIIAEKTKIPAV 81
>pdb|1DNV| Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 24.3 bits (51), Expect = 8.5
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 124 QGEVVRVVEGPFANFTATVEEYDVEHR 150
QG+ V ++ PF+NF + Y H+
Sbjct: 18 QGQDVYIIPRPFSNFGKKLSTYTKSHK 44
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.317 0.135 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 983,384
Number of Sequences: 13198
Number of extensions: 37086
Number of successful extensions: 106
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 99
Number of HSP's gapped (non-prelim): 17
length of query: 176
length of database: 2,899,336
effective HSP length: 82
effective length of query: 94
effective length of database: 1,817,100
effective search space: 170807400
effective search space used: 170807400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)