BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15646210|ref|NP_207995.1| Preprotein translocase
subunit SecE [Helicobacter pylori 26695]
(59 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidru... 24 3.8
pdb|1M56|B Chain B, Structure Of Cytochrome C Oxidase From ... 24 3.8
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complex... 23 5.0
pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complex... 23 5.0
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2 - Human Cyc... 23 5.0
pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-... 23 5.0
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NI... 23 5.0
pdb|1KE5|A Chain A, Cdk2 Complexed With N-Methyl-4-{[(2-Oxo... 23 5.0
pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2C... 23 5.0
>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
Transporter Acrb
Length = 1053
Score = 23.9 bits (50), Expect = 3.8
Identities = 11/29 (37%), Positives = 19/29 (64%)
Query: 25 QIRNALISVLVVVSAITLFLALLDFSLGA 53
QI+ AL+ + +V+SA+ + +A S GA
Sbjct: 437 QIQGALVGIAMVLSAVFVPMAFFGGSTGA 465
>pdb|1M56|B Chain B, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M56|H Chain H, Structure Of Cytochrome C Oxidase From Rhodobactor
Sphaeroides (Wild Type)
pdb|1M57|B Chain B, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
pdb|1M57|H Chain H, Structure Of Cytochrome C Oxidase From Rhodobacter
Sphaeroides (Eq(I-286) Mutant))
Length = 264
Score = 23.9 bits (50), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (65%)
Query: 21 PIKEQIRNALISVLVVVSAITLFLALL 47
P+ QI +LV+++AIT+F+ LL
Sbjct: 24 PVATQIHWLDGFILVIIAAITIFVTLL 50
>pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
Length = 299
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 243 KWARQDFSKVVPPLDEDGRSLLSQML 268
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 242 KWARQDFSKVVPPLDEDGRSLLSQML 267
>pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2 - Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
Length = 297
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 243 KWARQDFSKVVPPLDEDGRSLLSQML 268
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
Length = 298
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 242 KWARQDFSKVVPPLDEDGRSLLSQML 267
>pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
Substrate
pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
Length = 299
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 243 KWARQDFSKVVPPLDEDGRSLLSQML 268
>pdb|1KE5|A Chain A, Cdk2 Complexed With N-Methyl-4-{[(2-Oxo-1,2-Dihydro-3h-
Indol-3-Ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1FIN|A Chain A, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A - Cyclin-Dependent Kinase 2 Complex
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1HCL| Human Cyclin-Dependent Kinase 2
pdb|1HCK| Human Cyclin-Dependent Kinase 2
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1JSV|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With 4-[(6-Amino-4-Pyrimidinyl)
Amino]benzenesulfonamide
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1AQ1| Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor
Staurosporine
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
Length = 298
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 242 KWARQDFSKVVPPLDEDGRSLLSQML 267
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
Length = 303
Score = 23.5 bits (49), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 9 KLAREELSKVIFPIKEQIRNALISVL 34
K AR++ SKV+ P+ E R+ L +L
Sbjct: 247 KWARQDFSKVVPPLDEDGRSLLSQML 272
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.141 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,596
Number of Sequences: 13198
Number of extensions: 4248
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 9
length of query: 59
length of database: 2,899,336
effective HSP length: 35
effective length of query: 24
effective length of database: 2,437,406
effective search space: 58497744
effective search space used: 58497744
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.7 bits)