BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645819|ref|NP_207997.1| translation elongation
factor EF-Tu (tufB) [Helicobacter pylori 26695]
(399 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Fac... 603 e-174
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Re... 602 e-173
pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor,... 602 e-173
pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts Fr... 589 e-169
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus... 588 e-169
pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With Gua... 587 e-169
pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophil... 585 e-168
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermo... 584 e-168
pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP) 576 e-165
pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Dip... 575 e-165
pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRN... 530 e-151
pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-T... 471 e-134
pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfata... 192 6e-50
pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongati... 155 6e-39
pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of... 129 6e-31
pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma ... 129 8e-31
pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of... 120 3e-28
pdb|1ELO| Elongation Factor G Without Nucleotide >gi|1633... 57 4e-09
pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G ... 57 4e-09
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation F... 57 4e-09
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiati... 47 4e-06
pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiati... 47 4e-06
pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthe... 28 1.8
pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus The... 28 1.8
pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P... 28 1.8
pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, ... 27 3.1
pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxyprop... 27 3.1
pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritim... 27 4.1
pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant >... 27 4.1
pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Mar... 26 7.0
pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) ... 26 7.0
pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase) ... 26 9.1
pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp 26 9.1
pdb|1HFV|A Chain A, Structure Of The Small G Protein Arf6 I... 26 9.1
pdb|1GTT|D Chain D, Crystal Structure Of Hpce >gi|20149895|... 26 9.1
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 603 bits (1556), Expect = e-174
Identities = 293/398 (73%), Positives = 341/398 (85%), Gaps = 5/398 (1%)
Query: 1 MAKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERG 60
M+KEKF RTKPHVN+GTIGHVDHGKTTL+AAI+ VL+ + +D IDNAPEEK RG
Sbjct: 1 MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI TSH+EY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHI
Sbjct: 61 ITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL RQVGVP+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE
Sbjct: 121 LLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE 180
Query: 181 EAKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERG 240
EW K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG
Sbjct: 181 -----GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERG 235
Query: 241 VVKVGDEVEIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCK 300
++KVG+EVEIVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL K
Sbjct: 236 IIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAK 295
Query: 301 PGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGD 360
PG+I PH KFE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGD
Sbjct: 296 PGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGD 355
Query: 361 NVKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
N+K+ V LI P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 356 NIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
Length = 393
Score = 602 bits (1551), Expect = e-173
Identities = 292/397 (73%), Positives = 340/397 (85%), Gaps = 5/397 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGI 61
+KEKF RTKPHVN+GTIGHVDHGKTTL+AAI+ VL+ + +D IDNAPEEK RGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
TI TSH+EY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEE 181
L RQVGVP+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 182 AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGV 241
EW K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG+
Sbjct: 180 ----GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 235
Query: 242 VKVGDEVEIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKP 301
+KVG+EVEIVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL KP
Sbjct: 236 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 302 GSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDN 361
G+I PH KFE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGDN
Sbjct: 296 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 355
Query: 362 VKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
+K+ V LI P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 356 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
Length = 393
Score = 602 bits (1551), Expect = e-173
Identities = 292/397 (73%), Positives = 340/397 (85%), Gaps = 5/397 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGI 61
+KEKF RTKPHVN+GTIGHVDHGKTTL+AAI+ VL+ + +D IDNAPEEK RGI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGI 60
Query: 62 TIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
TI TSH+EY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEE 181
L RQVGVP+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 182 AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGV 241
EW K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG+
Sbjct: 180 ----GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 235
Query: 242 VKVGDEVEIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKP 301
+KVG+EVEIVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL KP
Sbjct: 236 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 302 GSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDN 361
G+I PH KFE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGDN
Sbjct: 296 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 355
Query: 362 VKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
+K+ V LI P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 356 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 589 bits (1519), Expect = e-169
Identities = 286/389 (73%), Positives = 333/389 (85%), Gaps = 5/389 (1%)
Query: 10 KPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGITIATSHIE 69
KPHVN+GTIGHVDHGKTTL+AAI+ VL+ + +D IDNAPEEK RGITI TSH+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVE 60
Query: 70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVP 129
Y+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHILL RQVGVP
Sbjct: 61 YDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVP 120
Query: 130 HIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEEAKAGNVGE 189
+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE E
Sbjct: 121 YIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE-----GDAE 175
Query: 190 WGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGVVKVGDEVE 249
W K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG++KVG+EVE
Sbjct: 176 WEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVGEEVE 235
Query: 250 IVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHKK 309
IVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL KPG+I PH K
Sbjct: 236 IVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGTIKPHTK 295
Query: 310 FEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELI 369
FE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGDN+K+ V LI
Sbjct: 296 FESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLI 355
Query: 370 SPVALELGTKFAIREGGRTVGAGVVSNII 398
P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 356 HPIAMDDGLRFAIREGGRTVGAGVVAKVL 384
>pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
Length = 405
Score = 588 bits (1516), Expect = e-169
Identities = 295/406 (72%), Positives = 338/406 (82%), Gaps = 9/406 (2%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGL-AEMKDYDNIDNAPEEKERG 60
AK +F RTKPHVN+GTIGHVDHGKTTL+AA++ V + + E+KDY +ID APEE+ RG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI T+H+EYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVSAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL+RQVGVP+IVVF+NK DMVDD ELL+LVEMEVR+LL+ YEFPGD+ P++ GSAL ALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 E------AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVT 234
E K G EW +K+ +L+ +D YIPTP RD +K FLMPVEDVF+I GRGTV T
Sbjct: 181 EMHKNPKTKRGE-NEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVAT 239
Query: 235 GRIERGVVKVGDEVEIVGIRP-TQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVE 293
GRIERG VKVGDEVEIVG+ P T+KT VTGVEM RK L++G AGDNVG+LLRG +EEVE
Sbjct: 240 GRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVE 299
Query: 294 RGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGV 353
RG VL KPGSITPH KFE +Y+L KEEGGRHT FFT YRPQFY RTTDVTG + LP+GV
Sbjct: 300 RGQVLAKPGSITPHTKFEASVYILKKEEGGRHTGFFTGYRPQFYFRTTDVTGVVRLPQGV 359
Query: 354 EMVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE 399
EMVMPGDNV TVELI PVALE G +FAIREGGRTVGAGVV+ I+E
Sbjct: 360 EMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EFT| Elongation Factor Tu (Ef-Tu) Complexed With
Guanosine-5'-(Beta,Gamma-Imido) Triphosphate (Gdpnp)
Length = 405
Score = 587 bits (1513), Expect = e-169
Identities = 295/406 (72%), Positives = 338/406 (82%), Gaps = 9/406 (2%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGL-AEMKDYDNIDNAPEEKERG 60
AK +F RTKPHVN+GTIGHVDHGKTTL+AA++ V + + E+KDY +ID APEE+ RG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI T+H+EYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVSAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL+RQVGVP+IVVF+NK DMVDD ELL+LVEMEVR+LL+ YEFPGD+ P++ GSAL ALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 E------AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVT 234
E K G EW +K+ +L+ +D YIPTP RD +K FLMPVEDVF+I GRGTV T
Sbjct: 181 EMHKNPKTKRGE-NEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVAT 239
Query: 235 GRIERGVVKVGDEVEIVGIRP-TQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVE 293
GRIERG VKVGDEVEIVG+ P T+KT VTGVEM RK L++G AGDNVG+LLRG +EEVE
Sbjct: 240 GRIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVE 299
Query: 294 RGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGV 353
RG VL KPGSITPH KFE +YVL KEEGGRHT FF+ YRPQFY RTTDVTG + LP+GV
Sbjct: 300 RGQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVRLPQGV 359
Query: 354 EMVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE 399
EMVMPGDNV TVELI PVALE G +FAIREGGRTVGAGVV+ I+E
Sbjct: 360 EMVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
Length = 405
Score = 585 bits (1508), Expect = e-168
Identities = 293/405 (72%), Positives = 335/405 (82%), Gaps = 7/405 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGL-AEMKDYDNIDNAPEEKERG 60
AK +F RTKPHVN+GTIGHVDHGKTTL+AA++ V + + E+KDY +ID APEE+ RG
Sbjct: 1 AKGEFIRTKPHVNVGTIGHVDHGKTTLTAALTFVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI T+H+EYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVSAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL+RQVGVP+IVVF+NK DMVDD ELL+LVEMEVR+LL+ YEFPGD+ P++ GSAL ALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 EAKAG-----NVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTG 235
+ EW +K+ +L+ +D YIPTP RD +K FLMPVEDVF+I GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 236 RIERGVVKVGDEVEIVGIRP-TQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVER 294
RIERG VKVGDEVEIVG+ P T+KT VTGVEM RK L++G AGDNVGVLLRG +EEVER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 295 GMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVE 354
G VL KPGSITPH KFE +YVL KEEGGRHT FF+ YRPQFY RTTDVTG + LP GVE
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 355 MVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE 399
MVMPGDNV TVELI PVALE G +FAIREGGRTVGAGVV+ I+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 584 bits (1505), Expect = e-168
Identities = 292/405 (72%), Positives = 335/405 (82%), Gaps = 7/405 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGL-AEMKDYDNIDNAPEEKERG 60
AK +F RTKPHVN+GTIGHVDHGKTTL+AA++ V + + E+KDY +ID APEE+ RG
Sbjct: 1 AKGEFVRTKPHVNVGTIGHVDHGKTTLTAALTYVTAAENPNVEVKDYGDIDKAPEERARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI T+H+EYET RHY+HVDCPGHADY+KNMITGAAQMDGAILVVSAADGPMPQTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL+RQVGVP+IVVF+NK DMVDD ELL+LVEMEVR+LL+ YEFPGD+ P++ GSAL ALE
Sbjct: 121 LLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE 180
Query: 181 EAKAG-----NVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTG 235
+ EW +K+ +L+ +D YIPTP RD +K FLMPVEDVF+I GRGTV TG
Sbjct: 181 QMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATG 240
Query: 236 RIERGVVKVGDEVEIVGIRP-TQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVER 294
RIERG VKVGDEVEIVG+ P T++T VTGVEM RK L++G AGDNVGVLLRG +EEVER
Sbjct: 241 RIERGKVKVGDEVEIVGLAPETRRTVVTGVEMHRKTLQEGIAGDNVGVLLRGVSREEVER 300
Query: 295 GMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVE 354
G VL KPGSITPH KFE +YVL KEEGGRHT FF+ YRPQFY RTTDVTG + LP GVE
Sbjct: 301 GQVLAKPGSITPHTKFEASVYVLKKEEGGRHTGFFSGYRPQFYFRTTDVTGVVQLPPGVE 360
Query: 355 MVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE 399
MVMPGDNV TVELI PVALE G +FAIREGGRTVGAGVV+ I+E
Sbjct: 361 MVMPGDNVTFTVELIKPVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1EFM| Trypsin-Modified Elongation Factor Tu (EF-Tu-GDP)
Length = 393
Score = 576 bits (1484), Expect = e-165
Identities = 282/397 (71%), Positives = 329/397 (82%), Gaps = 5/397 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGI 61
+KEKF RTKPHVN+GTIGHVDHGKTTL+AAI+ VL+ + GI
Sbjct: 1 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARXXXXXXXXXXXXXXGI 60
Query: 62 TIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
TI TSH+EY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHIL
Sbjct: 61 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 120
Query: 122 LSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEE 181
L RQVGVP+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE
Sbjct: 121 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 179
Query: 182 AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGV 241
EW K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG+
Sbjct: 180 ----GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 235
Query: 242 VKVGDEVEIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKP 301
+KVG+EVEIVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL KP
Sbjct: 236 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 295
Query: 302 GSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDN 361
G+I PH KFE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGDN
Sbjct: 296 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 355
Query: 362 VKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
+K+ V LI P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 356 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 392
>pdb|1ETU| Elongation Factor Tu (Domain I) - Guanosine Diphosphate Complex
Length = 394
Score = 575 bits (1481), Expect = e-165
Identities = 282/397 (71%), Positives = 328/397 (82%), Gaps = 5/397 (1%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGI 61
+KEKF RTKPHVN+GTIGHVDHGKTTL+AAI+ VL+ GI
Sbjct: 2 SKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAAXXXXXXXXXXXXXXXGI 61
Query: 62 TIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121
TI TSH+EY+T RHYAHVDCPGHADYVKNMITGAAQMDGAILVV+A DGPMPQTREHIL
Sbjct: 62 TINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121
Query: 122 LSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEE 181
L RQVGVP+I+VFLNK DMVDD+ELLELVEMEVRELLS Y+FPGDDTPIV GSAL+ALE
Sbjct: 122 LGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALE- 180
Query: 182 AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGV 241
EW K+L+L +D+YIP PER +K FL+P+EDVFSI+GRGTVVTGR+ERG+
Sbjct: 181 ----GDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGI 236
Query: 242 VKVGDEVEIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKP 301
+KVG+EVEIVGI+ TQK+T TGVEMFRK L++G AG+NVGVLLRG K+EE+ERG VL KP
Sbjct: 237 IKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVLAKP 296
Query: 302 GSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDN 361
G+I PH KFE E+Y+LSK+EGGRHTPFF YRPQFY RTTDVTG+I LPEGVEMVMPGDN
Sbjct: 297 GTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEMVMPGDN 356
Query: 362 VKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
+K+ V LI P+A++ G +FAIREGGRTVGAGVV+ ++
Sbjct: 357 IKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKVL 393
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND BOSOMAL
Proteins Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 530 bits (1364), Expect = e-151
Identities = 278/406 (68%), Positives = 322/406 (78%), Gaps = 9/406 (2%)
Query: 2 AKEKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGL-AEMKDYDNIDNAPEEKERG 60
AK +F RTK HVN+GTIGHVDHGKTTL+AA++ V + + E+KDY +ID A EE+ RG
Sbjct: 1 AKGEFIRTKRHVNVGTIGHVDHGKTTLTAALTYVAAAENRNVEVKDYGDIDKAREERARG 60
Query: 61 ITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI 120
ITI T+H+EYET RHY+HVDC GHADY+KNMITGAAQMDGAILVVSAADG M QTREHI
Sbjct: 61 ITINTAHVEYETAKRHYSHVDCRGHADYIKNMITGAAQMDGAILVVSAADGRMRQTREHI 120
Query: 121 LLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALE 180
LL+RQVGV +IVVF+NK DMVDD+ELL+LVEMEVR+LL+ YEF GD+ ++ GSAL ALE
Sbjct: 121 LLARQVGVRYIVVFMNKVDMVDDRELLDLVEMEVRDLLNQYEFRGDEVRVIRGSALLALE 180
Query: 181 E------AKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVT 234
E K G EW +K+ +L+ +D YI T RD +K FLM VEDVF+I GRGTV T
Sbjct: 181 EMHKNRKTKRGE-NEWVDKIWELLDAIDEYIRTRVRDVDKRFLMRVEDVFTITGRGTVAT 239
Query: 235 GRIERGVVKVGDEVEIVGI-RPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVE 293
GRIERG VKVGDEVEIVG+ R T+KT VTGVEM RK L++G AGDNVG+LLRG +EEVE
Sbjct: 240 GRIERGKVKVGDEVEIVGLARETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRGVSREEVE 299
Query: 294 RGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGV 353
RG VL K GSIT H KFE +Y+L KEEGGRHT FFT YR QFY RTTDVTG + L +GV
Sbjct: 300 RGQVLAKRGSITRHTKFEASVYILKKEEGGRHTGFFTGYRRQFYFRTTDVTGVVRLRQGV 359
Query: 354 EMVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNIIE 399
EMVM GDNV TVELI VALE G +FAIREGGRTVGAGVV+ I+E
Sbjct: 360 EMVMRGDNVTFTVELIKRVALEEGLRFAIREGGRTVGAGVVTKILE 405
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 471 bits (1213), Expect = e-134
Identities = 225/388 (57%), Positives = 296/388 (75%), Gaps = 5/388 (1%)
Query: 10 KPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGITIATSHIE 69
KPHVN+GTIGHVDHGKTTL+AAI+ +L+ G A+ K Y+ IDNAPEE+ RGITI +H+E
Sbjct: 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVE 60
Query: 70 YETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVP 129
Y T RHYAH DCPGHADYVKNMITG A +DG ILVV+A DGPMPQTREH+LL+RQ+GV
Sbjct: 61 YSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVE 120
Query: 130 HIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIVAGSALRALEEAKAGNVGE 189
H+VV++NK D V D E++ELVE+E+RELL+ + + G++TPI+ GSAL ALE+ E
Sbjct: 121 HVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDP----E 176
Query: 190 WGEK-VLKLMAEVDAYIPTPERDTEKTFLMPVEDVFSIAGRGTVVTGRIERGVVKVGDEV 248
G K V KL+ VD YIP P RD EK FL+PVE V+SI GRGTVVTG +ERG++K GDE
Sbjct: 177 LGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGDEC 236
Query: 249 EIVGIRPTQKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHK 308
E +G +T VTG+EMF K L++ EAGDN+G L+RG K+E++ RG+V+ KPGSI PH+
Sbjct: 237 EFLGHSKNIRTVVTGIEMFHKSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPGSIQPHQ 296
Query: 309 KFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVEL 368
K E ++Y+L+KEEGGRH PF +++ P + T D+ I LP G E+ MPG+++K+T+ L
Sbjct: 297 KVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIILPPGKELAMPGEDLKLTLIL 356
Query: 369 ISPVALELGTKFAIREGGRTVGAGVVSN 396
P+ LE G +F +R+G RT+G G+V++
Sbjct: 357 RQPMILEKGQRFTLRDGNRTIGTGLVTD 384
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
Length = 435
Score = 192 bits (488), Expect = 6e-50
Identities = 138/442 (31%), Positives = 225/442 (50%), Gaps = 72/442 (16%)
Query: 10 KPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDN------------------ID 51
KPH+N+ IGHVDHGK+TL + +L +G + K +D
Sbjct: 4 KPHLNLIVIGHVDHGKSTL---VGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLD 60
Query: 52 NAPEEKERGITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG 111
EE+ERG+TI + + +ET+ + +D PGH D+VKNMITGA+Q D AILVVSA G
Sbjct: 61 RLKEERERGVTINLTFMRFETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG 120
Query: 112 PMP-------QTREHILLSRQVGVPHIVVFLNKQDMV----DDQELLELVEMEVRELLSA 160
QTREHI+L++ +G+ ++V +NK D+ D++ E+V+ +V + + +
Sbjct: 121 EYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVD-QVSKFMRS 179
Query: 161 YEFPGDD---TPIVAGSALRALEEAKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFL 217
Y F + P+VA S K+ N+ + L+ E + P + +K
Sbjct: 180 YGFNTNKVRFVPVVAPSGDNITH--KSENMKWYNGPTLE---EYLDQLELPPKPVDKPLR 234
Query: 218 MPVEDVFSIAGRGTVVTGRIERGVVKVGDEVEIVGIRPTQKT-TVTGVEMFRKELEKGEA 276
+P++DV+SI+G GTV GR+E GV+KVGD++ + P K V +E +++K E
Sbjct: 235 IPIQDVYSISGVGTVPVGRVESGVLKVGDKIVFM---PAGKVGEVRSIETHHTKMDKAEP 291
Query: 277 GDNVGVLLRGTKKEEVERGMVLCKPGS-ITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQ 335
GDN+G +RG +K++++RG V+ P + T +F I V+ T Y P
Sbjct: 292 GDNIGFNVRGVEKKDIKRGDVVGHPNNPPTVADEFTARIIVV-----WHPTALANGYTPV 346
Query: 336 FYVRTTDVTGSIT-------------LPEGVEMVMPGDNVKITVELISPVALE------- 375
+V T V ++ + + + GD + + I P+ +E
Sbjct: 347 LHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPP 406
Query: 376 LGTKFAIREGGRTVGAGVVSNI 397
LG +FA+R+ G+TVG G++ ++
Sbjct: 407 LG-RFAMRDMGKTVGVGIIVDV 427
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-Eef1ba
Complex
Length = 458
Score = 155 bits (393), Expect = 6e-39
Identities = 132/444 (29%), Positives = 198/444 (43%), Gaps = 61/444 (13%)
Query: 8 RTKPHVNIGTIGHVDHGKTTLSAAI---------------SAVLSLKGLAEMKDYDNIDN 52
+ K H+N+ IGHVD GK+T + + + G K +D
Sbjct: 3 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDK 62
Query: 53 APEEKERGITIATSHIEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGP 112
E+ERGITI + ++ET +D PGH D++KNMITG +Q D AIL+++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGE 122
Query: 113 MP-------QTREHILLSRQVGVPHIVVFLNKQDMV--DDQELLELVEMEVRELLSAYEF 163
QTREH LL+ +GV ++V +NK D V D+ E+V+ E + +
Sbjct: 123 FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVK-ETSNFIKKVGY 181
Query: 164 PGDDTPIVAGSALRALEEAKAGNVGEW---GEKVLK--------LMAEVDAYIPTPERDT 212
P V S +A W EK K L+ +DA I P R T
Sbjct: 182 NPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDA-IEQPSRPT 240
Query: 213 EKTFLMPVEDVFSIAGRGTVVTGRIERGVVKVGDEVEIVGIRPTQKTT-VTGVEMFRKEL 271
+K +P++DV+ I G GTV GR+E GV+K G +V P TT V VEM ++L
Sbjct: 241 DKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPG---MVVTFAPAGVTTEVKSVEMHHEQL 297
Query: 272 EKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHK---KFEGEIYVLSK--EEGGRHT 326
E+G GDNVG ++ +E+ RG V C P K F + VL+ + ++
Sbjct: 298 EQGVPGDNVGFNVKNVSVKEIRRGNV-CGDAKNDPPKGCASFNATVIVLNHPGQISAGYS 356
Query: 327 PFFTNYRPQFYVR------TTDVTGSITLPEGVEMVMPGDNVKITVELISPVALE----- 375
P + R D L + + + GD + P+ +E
Sbjct: 357 PVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEY 416
Query: 376 --LGTKFAIREGGRTVGAGVVSNI 397
LG +FA+R+ +TV GV+ ++
Sbjct: 417 PPLG-RFAVRDMRQTVAVGVIKSV 439
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
Length = 410
Score = 129 bits (324), Expect = 6e-31
Identities = 129/444 (29%), Positives = 205/444 (46%), Gaps = 90/444 (20%)
Query: 4 EKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGITI 63
EK + VNIG +GHVDHGKTTL+ A++ V + D EE RGITI
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITI 48
Query: 64 ------------------ATS----HIEYETE-NRHYAHVDCPGHADYVKNMITGAAQMD 100
+TS + +ETE R + +D PGH + M+ GA+ MD
Sbjct: 49 KIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMD 108
Query: 101 GAILVVSAADG-PMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLS 159
GAILV++A + P PQTREH++ + +G +I++ NK ++VD ++ LE +++E +
Sbjct: 109 GAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE 167
Query: 160 AYEFPGDDTPIVAGSALRALEEAKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMP 219
++ PI+ SAL G + L+ ++ +IPTP+RD K M
Sbjct: 168 G--TVAENAPIIPISALH-------------GANIDVLVKAIEDFIPTPKRDPNKPPKML 212
Query: 220 VEDVFSIAGRGT--------VVTGRIERGVVKVGDEVEIVGIRPTQK----------TTV 261
V F + GT V+ G I +G +KVGDE+EI P ++ T +
Sbjct: 213 VLRSFDVNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEI 272
Query: 262 TGVEMFRKELEKGEAGDNVGVLLRGTK------KEEVERGMVLCKPGSITP-HKKFEGEI 314
++ + +E+ G VGV GTK K ++ G V+ KPG + P E+
Sbjct: 273 VSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEV 329
Query: 315 YVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISPVAL 374
++L + G + + R + ++ + +V +I V+L PV
Sbjct: 330 HLLERVVGTEQ-----ELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCA 384
Query: 375 ELGTKFAI-REGG---RTVGAGVV 394
E G + AI R+ G R +G G++
Sbjct: 385 EPGDRVAISRQIGSRWRLIGYGII 408
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 129 bits (323), Expect = 8e-31
Identities = 129/444 (29%), Positives = 205/444 (46%), Gaps = 90/444 (20%)
Query: 4 EKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGITI 63
EK + VNIG +GHVDHGKTTL+ A++ V + D EE RGITI
Sbjct: 2 EKRKSRQAEVNIGMVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITI 48
Query: 64 ------------------ATS----HIEYETE-NRHYAHVDCPGHADYVKNMITGAAQMD 100
+TS + +ETE R + +D PGH + M+ GA+ MD
Sbjct: 49 KIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTTMLAGASLMD 108
Query: 101 GAILVVSAADG-PMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLS 159
GAILV++A + P PQTREH++ + +G +I++ NK ++VD ++ LE +++E +
Sbjct: 109 GAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE 167
Query: 160 AYEFPGDDTPIVAGSALRALEEAKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMP 219
++ PI+ SAL G + L+ ++ +IPTP+RD K M
Sbjct: 168 G--TVAENAPIIPISALH-------------GANIDVLVKAIEDFIPTPKRDPNKPPKML 212
Query: 220 VEDVFSIAGRGT--------VVTGRIERGVVKVGDEVEIVGIRPTQK----------TTV 261
V F + GT V+ G I +G +KVGDE+EI P ++ T +
Sbjct: 213 VLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEI 272
Query: 262 TGVEMFRKELEKGEAGDNVGVLLRGTK------KEEVERGMVLCKPGSITP-HKKFEGEI 314
++ + +E+ G VGV GTK K ++ G V+ KPG + P E+
Sbjct: 273 VSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEV 329
Query: 315 YVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISPVAL 374
++L + G + + R + ++ + +V +I V+L PV
Sbjct: 330 HLLERVVGTEQ-----ELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCA 384
Query: 375 ELGTKFAI-REGG---RTVGAGVV 394
E G + AI R+ G R +G G++
Sbjct: 385 EPGDRVAISRQIGSRWRLIGYGII 408
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 120 bits (301), Expect = 3e-28
Identities = 127/448 (28%), Positives = 202/448 (44%), Gaps = 98/448 (21%)
Query: 4 EKFNRTKPHVNIGTIGHVDHGKTTLSAAISAVLSLKGLAEMKDYDNIDNAPEEKERGITI 63
EK + VNIG +GHVDHGKTTL+ A++ V + D EE RGITI
Sbjct: 2 EKRKSRQAEVNIGXVGHVDHGKTTLTKALTGVWT-------------DTHSEELRRGITI 48
Query: 64 ------------------ATS----HIEYETE-NRHYAHVDCPGHADYVKNMITGAAQMD 100
+TS + +ETE R + +D PGH + GA+ D
Sbjct: 49 KIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALXTTXLAGASLXD 108
Query: 101 GAILVVSAADG-PMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLS 159
GAILV++A + P PQTREH+ + +G +I++ NK ++VD ++ LE +++E +
Sbjct: 109 GAILVIAANEPCPRPQTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYR-QIKEFIE 167
Query: 160 AYEFPGDDTPIVAGSALRALEEAKAGNVGEWGEKVLKLMAEVDAYIPTPERDTEKTFLMP 219
++ PI+ SAL G + L+ ++ +IPTP+RD K
Sbjct: 168 G--TVAENAPIIPISALH-------------GANIDVLVKAIEDFIPTPKRDPNKPPKXL 212
Query: 220 VEDVFSIAGRGT--------VVTGRIERGVVKVGDEVEIVGIRPTQK----------TTV 261
V F + GT V+ G I +G +KVGDE+EI P ++ T +
Sbjct: 213 VLRSFDVNKPGTPPEKLVGGVLGGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEI 272
Query: 262 TGVEMFRKELEKGEAGDNVGVLLRGTK------KEEVERGMVLCKPGSITP-HKKFEGEI 314
++ + +E+ G VGV GTK K ++ G V+ KPG + P E+
Sbjct: 273 VSLQAGGQFVEEAYPGGLVGV---GTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEV 329
Query: 315 YVLSK----EEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELIS 370
++L + E+ + P V T G +T + D +++ +++
Sbjct: 330 HLLERVVGTEQELKVEPIKRKEVLLLNVGTARTXGLVT-------GLGKDEIEVKLQI-- 380
Query: 371 PVALELGTKFAI-REGG---RTVGAGVV 394
PV E G + AI R+ G R +G G++
Sbjct: 381 PVCAEPGDRVAISRQIGSRWRLIGYGII 408
>pdb|1ELO| Elongation Factor G Without Nucleotide
pdb|1DAR| Elongation Factor G In Complex With Gdp
Length = 691
Score = 57.0 bits (136), Expect = 4e-09
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 14 NIGTIGHVDHGKTTLSAAISAVLS-LKGLAEMKD-YDNIDNAPEEKERGITIATSHIEYE 71
NIG H+D GKTT + I + + E+ + +D +E+ERGITI +
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPHI 131
++ +D PGH D+ + +DGAI+V ++ G PQ+ + + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKQDMVDDQELLELVEMEVR 155
F NK D L + M+ R
Sbjct: 134 -AFANKMDKTGADLWLVIRTMQER 156
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
Length = 691
Score = 57.0 bits (136), Expect = 4e-09
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 14 NIGTIGHVDHGKTTLSAAISAVLS-LKGLAEMKD-YDNIDNAPEEKERGITIATSHIEYE 71
NIG H+D GKTT + I + + E+ + +D +E+ERGITI +
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPHI 131
++ +D PGH D+ + +DGAI+V ++ G PQ+ + + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKQDMVDDQELLELVEMEVR 155
F NK D L + M+ R
Sbjct: 134 -AFANKMDKTGADLWLVIRTMQER 156
>pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1EFG|A Chain A, Elongation Factor G Complexed With Guanosine
5'-Diphosphate
Length = 691
Score = 57.0 bits (136), Expect = 4e-09
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 3/144 (2%)
Query: 14 NIGTIGHVDHGKTTLSAAISAVLS-LKGLAEMKD-YDNIDNAPEEKERGITIATSHIEYE 71
NIG H+D GKTT + I + + E+ + +D +E+ERGITI +
Sbjct: 14 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF 73
Query: 72 TENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPHI 131
++ +D PGH D+ + +DGAI+V ++ G PQ+ + + VP I
Sbjct: 74 WKDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI 133
Query: 132 VVFLNKQDMVDDQELLELVEMEVR 155
F NK D L + M+ R
Sbjct: 134 -AFANKMDKTGADLWLVIRTMQER 156
>pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
Length = 594
Score = 47.0 bits (110), Expect = 4e-06
Identities = 43/131 (32%), Positives = 58/131 (43%), Gaps = 7/131 (5%)
Query: 15 IGTIGHVDHGKTTLSAAI--SAVLSLK--GLAEMKDYDNIDNAPEEKERGITIATSHIEY 70
+ +GHVDHGKTTL I SAV S + G+ + I E G + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPH 130
+ +D PGH + G A D AIL+V +G PQT+E + + R P
Sbjct: 68 TLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP- 124
Query: 131 IVVFLNKQDMV 141
VV NK D +
Sbjct: 125 FVVAANKIDRI 135
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 47.0 bits (110), Expect = 4e-06
Identities = 43/131 (32%), Positives = 58/131 (43%), Gaps = 7/131 (5%)
Query: 15 IGTIGHVDHGKTTLSAAI--SAVLSLK--GLAEMKDYDNIDNAPEEKERGITIATSHIEY 70
+ +GHVDHGKTTL I SAV S + G+ + I E G + I
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPXDVIEGICGDFLKKFSIRE 67
Query: 71 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPH 130
+ +D PGH + G A D AIL+V +G PQT+E + + R P
Sbjct: 68 TLPGLFF--IDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTP- 124
Query: 131 IVVFLNKQDMV 141
VV NK D +
Sbjct: 125 FVVAANKIDRI 135
>pdb|1ATI|A Chain A, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
pdb|1ATI|B Chain B, Crystal Structure Of Glycyl-Trna Synthetase From Thermus
Thermophilus
Length = 505
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 36 LSLKGLAEMKDYDNIDNAPEEKERGITIATSHIEYETENRHYAHVDCPGHADYVKNMITG 95
L L+G+A+ D+D + +++ GIT E+ T+ A+ D +V +I
Sbjct: 303 LELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQ--RLAYRDPETGKWFVPYVIEP 360
Query: 96 AAQMDGAILVVSA---ADGPMPQTREHILL 122
+A +D +L + A +P E I+L
Sbjct: 361 SAGVDRGVLALLAEAFTREELPNGEERIVL 390
>pdb|1B76|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1GGM|A Chain A, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
pdb|1B76|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Atp
pdb|1GGM|B Chain B, Glycyl-Trna Synthetase From Thermus Thermophilus Complexed
With Glycyl-Adenylate
Length = 442
Score = 28.1 bits (61), Expect = 1.8
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 36 LSLKGLAEMKDYDNIDNAPEEKERGITIATSHIEYETENRHYAHVDCPGHADYVKNMITG 95
L L+G+A+ D+D + +++ GIT E+ T+ A+ D +V +I
Sbjct: 240 LELEGIAQRTDFDLGSHTKDQEALGITARVLRNEHSTQ--RLAYRDPETGKWFVPYVIEP 297
Query: 96 AAQMDGAILVVSA---ADGPMPQTREHILL 122
+A +D +L + A +P E I+L
Sbjct: 298 SAGVDRGVLALLAEAFTREELPNGEERIVL 327
>pdb|1EUP|A Chain A, X-Ray Crystal Structure Of Cytochrome P450eryf With
Androstendione Bound
pdb|1OXA| Cytochrome P450 (Donor:o2 Oxidoreductase)
pdb|1JIN|A Chain A, P450eryfKETOCONAZOLE
pdb|1EGY|A Chain A, Cytochrome P450eryf With 9-Aminophenanthrene Bound
Length = 403
Score = 28.1 bits (61), Expect = 1.8
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
Query: 112 PMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVEMEVRELLSAYEFPGDDTPIV 171
P TR L+S++ V + + + + + L E+ + V +++ + P PI
Sbjct: 94 PPTHTRLRKLVSQEFTVRRVEAMRPRVEQITAELLDEVGDSGVVDIVDRFAHP---LPIK 150
Query: 172 AGSALRALEEAKAGNVGEWGEKVLKLMAE 200
L ++EA G G W ++L + E
Sbjct: 151 VICELLGVDEAARGAFGRWSSEILVMDPE 179
>pdb|5REQ|A Chain A, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
pdb|5REQ|C Chain C, Methylmalonyl-Coa Mutase, Y89f Mutant, Substrate Complex
Length = 727
Score = 27.3 bits (59), Expect = 3.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 330 TNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISP 371
+ Y Q T D+ + TL +GV+ + G++V + V+ +P
Sbjct: 240 SGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAP 281
>pdb|6REQ|A Chain A, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|6REQ|C Chain C, Methylmalonyl-Coa Mutase, 3-Carboxypropyl-Coa Inhibitor
Complex
pdb|4REQ|A Chain A, Methylmalonyl-Coa Mutase Substrate Complex
pdb|4REQ|C Chain C, Methylmalonyl-Coa Mutase Substrate Complex
pdb|1REQ|A Chain A, Methylmalonyl-Coa Mutase
pdb|1REQ|C Chain C, Methylmalonyl-Coa Mutase
pdb|2REQ|A Chain A, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|2REQ|C Chain C, Methylmalonyl-Coa Mutase, Non-Productive Coa Complex, In
Open Conformation Representing Substrate-Free State
pdb|3REQ|A Chain A, Methylmalonyl-Coa Mutase, Substrate-Free State (Poor
Quality Structure)
pdb|7REQ|A Chain A, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
pdb|7REQ|C Chain C, Methylmalonyl-Coa Mutase, 2-Carboxypropyl-Coa Inhibitor
Complex
Length = 727
Score = 27.3 bits (59), Expect = 3.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 330 TNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISP 371
+ Y Q T D+ + TL +GV+ + G++V + V+ +P
Sbjct: 240 SGYHMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAP 281
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 26.9 bits (58), Expect = 4.1
Identities = 13/60 (21%), Positives = 26/60 (42%)
Query: 305 TPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKI 364
+P + E + +E +HT F + + D+ +T+ GV ++P + KI
Sbjct: 252 SPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311
>pdb|1E1C|A Chain A, Methylmalonyl-Coa Mutase H244a Mutant
pdb|1E1C|C Chain C, Methylmalonyl-Coa Mutase H244a Mutant
Length = 727
Score = 26.9 bits (58), Expect = 4.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 330 TNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISP 371
+ Y Q T D+ + TL +GV+ + G++V + V+ +P
Sbjct: 240 SGYAMQEAGATADIEMAYTLADGVDYIRAGESVGLNVDQFAP 281
>pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Maritima Iclr
pdb|1MKM|B Chain B, Crystal Structure Of The Thermotoga Maritima Iclr
Length = 249
Score = 26.2 bits (56), Expect = 7.0
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 222 DVFSIAGRGTVVTGRIERGVVKVGDEVEIVGIRPTQKTTVTGVEMFRKELEK----GEAG 277
D++S A +++ E+ ++ + ++IV ++P T+T + ++ELEK G A
Sbjct: 132 DLYSTASGKSILAFVPEK---ELKEYLKIVELKPKTPNTITNPRVLKRELEKIRKRGYAV 188
Query: 278 DN----VGVLLRG 286
DN +G++ G
Sbjct: 189 DNEENEIGIMCVG 201
>pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif)
pdb|1GV4|B Chain B, Murine Apoptosis-Inducing Factor (Aif)
Length = 528
Score = 26.2 bits (56), Expect = 7.0
Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 257 QKTTVTGVEMFRKELEKGEAGDNVGVLLRGTKKEEVERGMVLCKPGSITPHKKFEGEIYV 316
+K+ +G+E+ + EKG G + L E+V+R V P +I G +
Sbjct: 238 RKSQASGIEVIQLFPEKGNMGKILPQYLSNWTMEKVKREGVKVMPNAIVQSVGVSGGRLL 297
Query: 317 LSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPG 359
+ ++G + V T + ++ L VE+ G
Sbjct: 298 IKLKDGRK-------------VETDHIVTAVGLEPNVELAKTG 327
>pdb|1INP| Inositol Polyphosphate 1-Phosphatase (1-Ptase)
(Inositol-1,4-Bisphosphate 1-Phosphatase) (E.C.3.1.3.57)
Complexed With Magnesium
Length = 400
Score = 25.8 bits (55), Expect = 9.1
Identities = 18/73 (24%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
Query: 313 EIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVELISPV 372
++ + K+EG ++ F +++ DV + E +E PG KI E + +
Sbjct: 30 QLLIEEKKEGEKNKKFAVDFKT-----LADVLVQEVIKENMENKFPGLGKKIFGEESNEL 84
Query: 373 ALELGTKFAIREG 385
+LG K +R G
Sbjct: 85 TNDLGEKIIMRLG 97
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 25.8 bits (55), Expect = 9.1
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Query: 101 GAILVVSAAD----GPMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVE 151
G I VV AD Q I+ R++ I++F NKQD+ D + E+ E
Sbjct: 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 136
>pdb|1HFV|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|1HFV|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 174
Score = 25.8 bits (55), Expect = 9.1
Identities = 18/55 (32%), Positives = 26/55 (46%), Gaps = 4/55 (7%)
Query: 101 GAILVVSAAD----GPMPQTREHILLSRQVGVPHIVVFLNKQDMVDDQELLELVE 151
G I VV AD Q I+ R++ I++F NKQD+ D + E+ E
Sbjct: 82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQE 136
>pdb|1GTT|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 25.8 bits (55), Expect = 9.1
Identities = 13/41 (31%), Positives = 19/41 (45%)
Query: 327 PFFTNYRPQFYVRTTDVTGSITLPEGVEMVMPGDNVKITVE 367
PF Y +F + P+G+ V+PGD V + VE
Sbjct: 373 PFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVVEVE 413
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.315 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,350,740
Number of Sequences: 13198
Number of extensions: 102546
Number of successful extensions: 238
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 150
Number of HSP's gapped (non-prelim): 38
length of query: 399
length of database: 2,899,336
effective HSP length: 90
effective length of query: 309
effective length of database: 1,711,516
effective search space: 528858444
effective search space used: 528858444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)