BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645821|ref|NP_207999.1| hypothetical protein
[Helicobacter pylori 26695]
(222 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1HYF|A Chain A, Ribonuclease T1 V16a Mutant In Complex ... 27 1.4
pdb|1LOW|A Chain A, X-Ray Structure Of The H40a Mutant Of R... 27 2.5
pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carbo... 27 2.5
pdb|1LOY|A Chain A, X-Ray Structure Of The H40aE58A MUTANT ... 27 2.5
pdb|1G02|A Chain A, Ribonuclease T1 V16s Mutant 26 3.2
pdb|4GSP| Ribonuclease T1 Complexed With 2',3'-Cgps + 3'-... 26 4.2
pdb|1RGL| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Glu ... 26 4.2
pdb|1I2G|A Chain A, Ribonuclease T1 V16t Mutant 26 4.2
pdb|4HOH|A Chain A, Ribonuclease T1 (Thr93ala Mutant) Compl... 26 4.2
pdb|3HOH|A Chain A, Ribonuclease T1 (Thr93gln Mutant) Compl... 26 4.2
pdb|2AAD|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) Isozyme ... 26 4.2
pdb|3BIR| Disecting Histidine Interactions In Ribonucleas... 26 4.2
pdb|1DET| Ribonuclease T1 Carboxymethylated At Glu 58 In ... 26 4.2
pdb|1TRQ|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 ... 26 4.2
pdb|1FZU|A Chain A, Rnase T1 V78a Mutant 26 4.2
pdb|1I3F|A Chain A, Ribonuclease T1 V89s Mutant 26 4.2
pdb|1FYS|A Chain A, Ribonuclease T1 V16c Mutant 26 4.2
pdb|4RNT| Ribonuclease T1 (E.C.3.1.27.3) (H92A) (Mutant W... 26 4.2
pdb|1LOV|A Chain A, X-Ray Structure Of The E58a Mutant Of R... 26 4.2
pdb|5BIR|B Chain B, Disecting Histidine Interactions In Rib... 26 4.2
pdb|1BIR|A Chain A, Ribonuclease T1, Phe 100 To Ala Mutant ... 26 4.2
pdb|1YGW| Nmr Structure Of Ribonuclease T1, 34 Structures 26 4.2
pdb|1I3I|A Chain A, Ribonuclease T1 V78t Mutant 26 4.2
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransfer... 25 5.5
pdb|7RNT| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Tyr ... 25 7.1
pdb|1TRP|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 ... 25 7.1
pdb|2TPT| Structural And Theoretical Studies Suggest Doma... 25 7.1
pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin... 25 9.3
pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) ... 25 9.3
pdb|2HOH|A Chain A, Ribonuclease T1 (N9a Mutant) Complexed ... 25 9.3
pdb|5HOH|A Chain A, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLE... 25 9.3
pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein... 25 9.3
pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3... 25 9.3
>pdb|1HYF|A Chain A, Ribonuclease T1 V16a Mutant In Complex With Sr2+
pdb|1HZ1|A Chain A, Ribonuclease T1 V16a Mutant In Complex With Mg2+
pdb|1I2E|A Chain A, Ribonuclease T1 V16a Mutant, Form I
pdb|1I2F|A Chain A, Ribonuclease T1 V16a Mutant, Form Ii
Length = 104
Score = 27.3 bits (59), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (46%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ A+ GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDASTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1LOW|A Chain A, X-Ray Structure Of The H40a Mutant Of Ribonuclease T1
Complexed With 3'-Guanosine Monophosphate
Length = 104
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPAKY-NNYEGFD 49
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4-Piperidino-Piperidine
Length = 534
Score = 26.6 bits (57), Expect = 2.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 27 ALFQKHGNKNQESLKQFEVYHYQSG 51
A F ++GN N E L Q+ Y Y+ G
Sbjct: 478 ANFARNGNPNGEGLPQWPAYDYKEG 502
>pdb|1LOY|A Chain A, X-Ray Structure Of The H40aE58A MUTANT OF RIBONUCLEASE T1
Complexed With 3'-Guanosine Monophosphate
Length = 104
Score = 26.6 bits (57), Expect = 2.5
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPAKY-NNYEGFD 49
>pdb|1G02|A Chain A, Ribonuclease T1 V16s Mutant
Length = 104
Score = 26.2 bits (56), Expect = 3.2
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ ++ GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDSSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|4GSP| Ribonuclease T1 Complexed With 2',3'-Cgps + 3'-Gmp, 7 Days
pdb|1RGA| Ribonuclease T1 (E.C.3.1.27.3) Isozyme Complex With 3'-Guanylic
Acid And Guanosine
pdb|3BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|5BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|2GSP| Ribonuclease T12',3'-Cgps And 3'-Gmp, 2 Days
pdb|2RNT| Lys 25-Ribonuclease T1 (Lys 25-RNase T1) (E.C.3.1.27.3) Complex
With Guanylyl-2(Prime),5(Prime)-Guanosine
pdb|3RNT| Lys 25-Ribonuclease T1 (Lys 25-RNase T1) (E.C.3.1.27.3) Complex
With Vanadate (V)
pdb|4BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|5GSP| Ribonuclease T13'-Gmp, 9 Weeks
pdb|6RNT| Ribonuclease T1 (E.C.3.1.27.3) Complex With 2'-Adenylic Acid
pdb|7GSP|A Chain A, Ribonuclease T12',3'-Cgps, Non-Productive
pdb|3GSP| Ribonuclease T1 Complexed With 2',3'-Cgps + 3'-Gmp, 4 Days
pdb|1BU4| Ribonuclease 1 Complex With 2'gmp
pdb|2BU4|A Chain A, Ribonuclease T1 Complex With 2'gmp
pdb|1RGC|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) Mutant With Gln 25 Replaced
By Lys (Q25k) Complex With 3'-Guanylic Acid
pdb|1GSP| Ribonuclease T1 Complexed With 2',3'-Cgps, 1 Day
pdb|6GSP| Ribonuclease T13'- Gmp, 15 Weeks
pdb|5RNT| Ribonuclease T1 (E.C.3.1.27.3) Complex With
Guanosine-3',5'-Bisphosphate
pdb|9RNT| Ribonuclease T1 (E.C.3.1.27.3) Complex With Ca2+
pdb|8RNT| Ribonuclease T1 (E.C.3.1.27.3) Complex With Zn2+
pdb|1BVI|A Chain A, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|B Chain B, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|C Chain C, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|1BVI|D Chain D, Ribonuclease T1 (Wildtype) Complexed With 2'gmp
pdb|7GSP|B Chain B, Ribonuclease T12',3'-Cgps, Non-Productive
pdb|1RNT| Ribonuclease T1(E.C.3.1.27.3) Isozyme-2(Prime)-Guanylic Acid
Complex
pdb|1RGC|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) Mutant With Gln 25 Replaced
By Lys (Q25k) Complex With 3'-Guanylic Acid
pdb|1I0X|D Chain D, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|B Chain B, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|C Chain C, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0X|A Chain A, Ribonuclease T1 In Complex With 2'gmp (Form Ii Crystal)
pdb|1I0V|A Chain A, Ribonuclease T1 In Complex With 2'gmp (Form I Crystal)
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1RGL| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Glu 46 Replaced By Gln
(E46q) Complex With 2'gmp
pdb|1RGK| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Glu 46 Replaced By Gln
(E46q) Complex With 2'amp
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYQGFD 49
>pdb|1I2G|A Chain A, Ribonuclease T1 V16t Mutant
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDTSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|4HOH|A Chain A, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|B Chain B, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|C Chain C, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
pdb|4HOH|D Chain D, Ribonuclease T1 (Thr93ala Mutant) Complexed With 2'gmp
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|3HOH|A Chain A, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|B Chain B, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|C Chain C, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
pdb|3HOH|D Chain D, Ribonuclease T1 (Thr93gln Mutant) Complexed With 2'gmp
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|2AAD|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) Isozyme 2' Mutant With His
40 Replaced By Lys (H40k) Complex With Guanylic Acid
(2'-Gmp)
pdb|2AAD|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) Isozyme 2' Mutant With His
40 Replaced By Lys (H40k) Complex With Guanylic Acid
(2'-Gmp)
pdb|2AAE| Ribonuclease T1 (E.C.3.1.27.3) Mutant With His 40 Replaced By Lys
(H40k) Complex With Phosphate
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPKKY-NNYEGFD 49
>pdb|3BIR| Disecting Histidine Interactions In Ribonuclease T1 By Asn And Gln
Substitutions
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1DET| Ribonuclease T1 Carboxymethylated At Glu 58 In Complex With 2'gmp
pdb|1B2M|A Chain A, Three-Dimensional Structure Of Ribonulcease T1 Complexed
With An Isosteric Phosphonate Analogue Of Gpu: Alternate
Substrate Binding Modes And Catalysis.
pdb|1B2M|B Chain B, Three-Dimensional Structure Of Ribonulcease T1 Complexed
With An Isosteric Phosphonate Analogue Of Gpu: Alternate
Substrate Binding Modes And Catalysis.
pdb|1RLS| Ribonuclease T1 (E.C.3.1.27.3) Complexed With 3'-Guanylic Acid
pdb|1RN1|C Chain C, Ribonuclease T1 (E.C.3.1.27.3) (Gln 25 Variant)
pdb|1RN1|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) (Gln 25 Variant)
pdb|1RN1|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) (Gln 25 Variant)
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1TRQ|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 Isoform) Mutant
With Trp 59 Replaced By Tyr (W59y) Complexed With
2'-Guanylic Acid
pdb|1TRQ|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 Isoform) Mutant
With Trp 59 Replaced By Tyr (W59y) Complexed With
2'-Guanylic Acid
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1FZU|A Chain A, Rnase T1 V78a Mutant
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1I3F|A Chain A, Ribonuclease T1 V89s Mutant
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1FYS|A Chain A, Ribonuclease T1 V16c Mutant
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDCSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|4RNT| Ribonuclease T1 (E.C.3.1.27.3) (H92A) (Mutant With His 92 Replaced
By Ala)
pdb|1RN4| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Histidine 92 Replaced
By Alanine (H92a) Precipitant Phosphate
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1LOV|A Chain A, X-Ray Structure Of The E58a Mutant Of Ribonuclease T1
Complexed With 3'-Guanosine Monophosphate
pdb|1LRA| Ribonuclease T1 (Rnase T1) (E.C.3.1.27.3) Mutant With Glu 58
Replaced By Ala (E58a) Complex With 2'-Guanylic Acid
(2'-Gmp)
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|5BIR|B Chain B, Disecting Histidine Interactions In Ribonuclease T1 Using
Asn And Gln Mutations
pdb|4BIR| Ribonuclease T1: Free His92gln Mutant
pdb|5BIR|A Chain A, Disecting Histidine Interactions In Ribonuclease T1 Using
Asn And Gln Mutations
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1BIR|A Chain A, Ribonuclease T1, Phe 100 To Ala Mutant Complexed With 2'
Gmp
pdb|1BIR|B Chain B, Ribonuclease T1, Phe 100 To Ala Mutant Complexed With 2'
Gmp
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1YGW| Nmr Structure Of Ribonuclease T1, 34 Structures
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1I3I|A Chain A, Ribonuclease T1 V78t Mutant
Length = 104
Score = 25.8 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 25.4 bits (54), Expect = 5.5
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 125 LQVLCEFLGIIKYFKSVEGSPPNKPKIIANIIQKYAYNPG-RMLMIGDSVNDYESAQANE 183
L + E + ++ Y E S ++P ++A ++ + G R+L IG
Sbjct: 37 LSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVGLDKGMRVLEIGGGT---------- 86
Query: 184 VAFLGYNSKVLKNLVGQNG 202
GYN+ V+ +VG+ G
Sbjct: 87 ----GYNAAVMSRVVGEKG 101
>pdb|7RNT| Ribonuclease T1 (E.C.3.1.27.3) Mutant With Tyr 45 Replaced By Trp
(Y45w) Complex With 2'-Adenylic Acid
Length = 104
Score = 25.0 bits (53), Expect = 7.1
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNWEGFD 49
>pdb|1TRP|B Chain B, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 Isoform) Mutant
With Tyr 45 Replaced By Trp And Trp 59 Replaced By Tyr
(Y45w,W59y) Complexed With 2'-Guanylic Acid
pdb|1TRP|A Chain A, Ribonuclease T1 (E.C.3.1.27.3) (Lys 25 Isoform) Mutant
With Tyr 45 Replaced By Trp And Trp 59 Replaced By Tyr
(Y45w,W59y) Complexed With 2'-Guanylic Acid
Length = 104
Score = 25.0 bits (53), Expect = 7.1
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Query: 174 NDYESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
N Y S+ + GY VG N Y KY +++GFD
Sbjct: 9 NCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNWEGFD 49
>pdb|2TPT| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1OTP| Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|A Chain A, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1AZY|B Chain B, Structural And Theoretical Studies Suggest Domain Movement
Produces An Active Conformation Of Thymidine
Phosphorylase
pdb|1TPT| Thymidine Phosphorylase (E.C.2.4.2.4)
Length = 440
Score = 25.0 bits (53), Expect = 7.1
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 26/93 (27%)
Query: 49 QSGGISRNEKIQYFYNEILKTPIAQEEVDALAL--------------------EFGTIIE 88
+ G +E+I++F N I I++ ++ ALA+ + GT+++
Sbjct: 12 RDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLTMAMRDSGTVLD 71
Query: 89 QKLFDREHLNSEVMAFIDKHYKNHVFHIASAAL 121
K HLN + +DKH V + S L
Sbjct: 72 WKSL---HLNGPI---VDKHSTGGVGDVTSLML 98
>pdb|1MWS|A Chain A, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWS|B Chain B, Structure Of Nitrocefin Acyl-Penicillin Binding Protein 2a
From Methicillin Resistant Staphylococcus Aureus Strain
27r At 2.00 A Resolution.
pdb|1MWT|A Chain A, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWT|B Chain B, Structure Of Penicillin G Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.45 A Resolution.
pdb|1MWU|A Chain A, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution.
pdb|1MWU|B Chain B, Structure Of Methicillin Acyl-Penicillin Binding Protein
2a From Methicillin Resistant Staphylococcus Aureus
Strain 27r At 2.60 A Resolution
Length = 646
Score = 24.6 bits (52), Expect = 9.3
Identities = 20/87 (22%), Positives = 39/87 (43%), Gaps = 9/87 (10%)
Query: 33 GNKNQESLKQFEVYHYQSGGISRNEKIQYFYNEIL------KTPIAQEEVDALALEFGTI 86
G N E LKQ E Y+ + + ++ Y++ L + I + + +A T+
Sbjct: 235 GPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIA---HTL 291
Query: 87 IEQKLFDREHLNSEVMAFIDKHYKNHV 113
IE+K D + + + A + K N++
Sbjct: 292 IEKKKKDGKDIQLTIDAKVQKSIYNNM 318
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 83 FGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAALHSELQVLCEFLGIIKYFKSVE 142
FG + + KL D L + DK +KN I H C + + +F S
Sbjct: 52 FGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDH------CNIVRLRYFFYS-- 103
Query: 143 GSPPNKPKIIANIIQKY 159
S K ++ N++ Y
Sbjct: 104 -SGEKKDEVYLNLVLDY 119
>pdb|2HOH|A Chain A, Ribonuclease T1 (N9a Mutant) Complexed With 2'gmp
pdb|2HOH|B Chain B, Ribonuclease T1 (N9a Mutant) Complexed With 2'gmp
pdb|2HOH|C Chain C, Ribonuclease T1 (N9a Mutant) Complexed With 2'gmp
pdb|2HOH|D Chain D, Ribonuclease T1 (N9a Mutant) Complexed With 2'gmp
Length = 104
Score = 24.6 bits (52), Expect = 9.3
Identities = 13/40 (32%), Positives = 18/40 (44%), Gaps = 1/40 (2%)
Query: 176 YESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
Y S+ + GY VG N Y KY +++GFD
Sbjct: 11 YSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|5HOH|A Chain A, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|B Chain B, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|D Chain D, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
pdb|5HOH|C Chain C, Ribonuclease T1 (Asn9alaTHR93ALA DOUBLEMUTANT) COMPLEXED
With 2'gmp
Length = 104
Score = 24.6 bits (52), Expect = 9.3
Identities = 13/40 (32%), Positives = 18/40 (44%), Gaps = 1/40 (2%)
Query: 176 YESAQANEVAFLGYNSKVLKNLVGQNGYQGKYLESFKGFD 215
Y S+ + GY VG N Y KY +++GFD
Sbjct: 11 YSSSDVSTAQAAGYKLHEDGETVGSNSYPHKY-NNYEGFD 49
>pdb|1MWX|A Chain A, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution.
pdb|1MWX|B Chain B, Structure Of Penicillin Binding Protein 2a From
Methicillin Resistant Staphylococcus Aureus Strain 27r
At 1.80 A Resolution
Length = 646
Score = 24.6 bits (52), Expect = 9.3
Identities = 20/87 (22%), Positives = 39/87 (43%), Gaps = 9/87 (10%)
Query: 33 GNKNQESLKQFEVYHYQSGGISRNEKIQYFYNEIL------KTPIAQEEVDALALEFGTI 86
G N E LKQ E Y+ + + ++ Y++ L + I + + +A T+
Sbjct: 235 GPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVTIVDDNSNTIA---HTL 291
Query: 87 IEQKLFDREHLNSEVMAFIDKHYKNHV 113
IE+K D + + + A + K N++
Sbjct: 292 IEKKKKDGKDIQLTIDAKVQKSIYNNM 318
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
Length = 420
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 9/77 (11%)
Query: 83 FGTIIEQKLFDREHLNSEVMAFIDKHYKNHVFHIASAALHSELQVLCEFLGIIKYFKSVE 142
FG + + KL D L + DK +KN I H C + + +F S
Sbjct: 67 FGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDH------CNIVRLRYFFYS-- 118
Query: 143 GSPPNKPKIIANIIQKY 159
S K ++ N++ Y
Sbjct: 119 -SGEKKDEVYLNLVLDY 134
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,314,543
Number of Sequences: 13198
Number of extensions: 51935
Number of successful extensions: 209
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 33
length of query: 222
length of database: 2,899,336
effective HSP length: 85
effective length of query: 137
effective length of database: 1,777,506
effective search space: 243518322
effective search space used: 243518322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)