BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645823|ref|NP_208001.1| ulcer-associated gene
restriction endonuclease (iceA) [Helicobacter pylori 26695]
(172 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1BY5|A Chain A, Fhua From E. Coli, With Its Ligand Ferr... 25 3.7
pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fh... 25 3.7
pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhu... 25 3.7
pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide... 25 3.7
pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Recep... 25 3.7
pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhu... 25 3.7
pdb|1DVH| Cytochrome C553 (Reduced) (Nmr, 36 Structures) 25 4.8
pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfo... 25 4.8
pdb|1DOT| Mol_id: 1; Molecule: Duck Ovotransferrin; Chain... 25 4.8
pdb|1CGN| Cytochrome C' 25 6.3
pdb|1CGO| Cytochrome C' 24 8.2
pdb|1E83|A Chain A, Cytochrome C' From Alcaligenes Xylosoxi... 24 8.2
pdb|1CN2| Solution Structure Of Toxin 2 From Centruroides... 24 8.2
>pdb|1BY5|A Chain A, Fhua From E. Coli, With Its Ligand Ferrichrome
pdb|1BY3|A Chain A, Fhua From E. Coli
Length = 714
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 301 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 332
>pdb|1QFG|A Chain A, E. Coli Ferric Hydroxamate Receptor (Fhua)
pdb|1QJQ|A Chain A, Ferric Hydroxamate Receptor From Escherichia Coli (Fhua)
pdb|1QKC|A Chain A, Escherichia Coli Ferric Hydroxamate Uptake Receptor (Fhua)
In Complex Delta Two-Albomycin
Length = 725
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 301 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 332
>pdb|2FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli
Length = 723
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 301 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 332
>pdb|1FI1|A Chain A, Fhua In Complex With Lipopolysaccharide And Rifamycin
Cgp4832
Length = 707
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 283 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 314
>pdb|1QFF|A Chain A, E. Coli Ferric Hydroxamate Uptake Receptor (Fhua) In
Complex With Bound Ferrichrome-Iron
Length = 725
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 301 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 332
>pdb|1FCP|A Chain A, Ferric Hydroxamate Uptake Receptor (Fhua) From E.Coli In
Complex With Bound Ferrichrome-Iron
Length = 705
Score = 25.4 bits (54), Expect = 3.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 15 RIRLNGYNTECVFNQSICQDIKNHYKQQCCAM 46
R N + V+ +C D N Y +QC A+
Sbjct: 283 RFAENKTSQNSVYGYGVCSDPANAYSKQCAAL 314
>pdb|1DVH| Cytochrome C553 (Reduced) (Nmr, 36 Structures)
Length = 79
Score = 25.0 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 122 EGEAEYDGCVGCYQYDPIQYRKTCNDRIYNEGYQ------KGYSDG 161
+G A Y C+GC+ D + + +G + KGY+DG
Sbjct: 2 DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADG 47
>pdb|2DVH| The Y64a Mutant Of Cytochrome C553 From Desulfovibrio Vulgaris
Hildenborough, Nmr, 39 Structures
Length = 79
Score = 25.0 bits (53), Expect = 4.8
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 122 EGEAEYDGCVGCYQYDPIQYRKTCNDRIYNEGYQ------KGYSDG 161
+G A Y C+GC+ D + + +G + KGY+DG
Sbjct: 2 DGAALYKSCIGCHGADGSKAAMGSAKPVKGQGAEELYKKMKGYADG 47
>pdb|1DOT| Mol_id: 1; Molecule: Duck Ovotransferrin; Chain: Null; Synonym:
Dot
pdb|1AOV| Apo Duck Ovotransferrin
Length = 686
Score = 25.0 bits (53), Expect = 4.8
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 80 FDD-FQALCKACNDKKRQICKKCKETGYRFDARKIPGNHYSFYEGEAEYDGCVGC 133
FDD F C + ++CK C+ +G + + +H +Y Y G + C
Sbjct: 480 FDDYFSEGCAPGSPPNSRLCKLCQGSGENLLEKCVASSHEKYY----GYTGALRC 530
>pdb|1CGN| Cytochrome C'
Length = 127
Score = 24.6 bits (52), Expect = 6.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 79 AFDDFQALCKACNDKKRQ 96
AF D A CKAC+D R+
Sbjct: 108 AFGDVGASCKACHDSYRK 125
>pdb|1CGO| Cytochrome C'
Length = 127
Score = 24.3 bits (51), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 79 AFDDFQALCKACNDKKRQ 96
AF D A CKAC+D R+
Sbjct: 108 AFGDVGASCKACHDAYRK 125
>pdb|1E83|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans - Oxidized
Structure
pdb|1E84|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans - Reduced
Structure
pdb|1E85|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans - Reduced
Structure With No Bound To Proximal Side Of Heme
pdb|1E86|A Chain A, Cytochrome C' From Alcaligenes Xylosoxidans - Reduced
Structure With Co Bound To Distal Side Of Heme
Length = 127
Score = 24.3 bits (51), Expect = 8.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 79 AFDDFQALCKACNDKKRQ 96
AF D A CKAC+D R+
Sbjct: 108 AFGDVGASCKACHDAYRK 125
>pdb|1CN2| Solution Structure Of Toxin 2 From Centruroides Noxius Hoffmann, A
Beta Scorpion Neurotoxin Acting On Sodium Channels, Nmr,
15 Structures
Length = 67
Score = 24.3 bits (51), Expect = 8.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 102 KETGYRFDARKIPGNHYSFYEGEAEYDGCVGCYQY 136
K TG +++ K+ N Y E + +Y G Y Y
Sbjct: 8 KNTGCKYECLKLGDNDYCLRECKQQYGKGAGGYCY 42
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,176,307
Number of Sequences: 13198
Number of extensions: 49172
Number of successful extensions: 108
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 98
Number of HSP's gapped (non-prelim): 13
length of query: 172
length of database: 2,899,336
effective HSP length: 82
effective length of query: 90
effective length of database: 1,817,100
effective search space: 163539000
effective search space used: 163539000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)