BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645824|ref|NP_208002.1| serine acetyltransferase
(cysE) [Helicobacter pylori 26695]
(171 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Comple... 52 3e-08
pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-... 47 1e-06
pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Ace... 45 4e-06
pdb|1QRM|A Chain A, A Closer Look At The Active Site Of Gam... 35 0.005
pdb|1QRE|A Chain A, A Closer Look At The Active Site Of Gam... 35 0.005
pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina ... 35 0.005
pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gam... 35 0.005
pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I) >g... 32 0.051
pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of ... 30 0.11
pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetylt... 30 0.11
pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase 29 0.25
pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamin... 28 0.73
pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahyd... 27 0.96
pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicoli... 27 0.96
pdb|1QJ8|A Chain A, Crystal Structure Of The Outer Membrane... 26 2.1
pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida... 26 2.1
pdb|1YTS| Molecule: Yersinia Protein Tyrosine Phosphatase... 26 2.8
pdb|1LYV|A Chain A, High-Resolution Structure Of The Cataly... 26 2.8
pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamat... 25 4.7
pdb|1H7U|A Chain A, Hpms2-Atpgs >gi|17942779|pdb|1H7U|B Cha... 24 8.1
pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydroge... 24 8.1
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Com... 24 8.1
pdb|1YPT|B Chain B, Protein-Tyrosine Phosphatase (Yersinia)... 24 8.1
pdb|1YTW| Yersinia Ptpase Complexed With Tungstate >gi|19... 24 8.1
>pdb|1KRU|A Chain A, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|B Chain B, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRU|C Chain C, Galactoside Acetyltransferase In Complex With Iptg And
Coenzyme A
pdb|1KRV|A Chain A, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|B Chain B, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRV|C Chain C, Galactoside Acetyltransferase In Complex With Coa And Pnp-
Beta-Gal
pdb|1KRR|C Chain C, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|C Chain C, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|A Chain A, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|A Chain A, Galactoside Acetyltransferase In Complex With Coenzyme A
pdb|1KRR|B Chain B, Galactoside Acetyltransferase In Complex With Acetyl-
Coenzyme A
pdb|1KQA|B Chain B, Galactoside Acetyltransferase In Complex With Coenzyme A
Length = 203
Score = 52.4 bits (124), Expect = 3e-08
Identities = 36/117 (30%), Positives = 55/117 (46%), Gaps = 14/117 (11%)
Query: 61 FITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTG-------KFKG 113
F G IH IGR + + + +V T IGD+V I VTL TG + G
Sbjct: 70 FSYGSNIH----IGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVTGHPVHHELRKNG 125
Query: 114 KRHP---TLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTI 167
+ + T+GN V +G+ + + +GD+ IGA ++V D+P A G + I
Sbjct: 126 EMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTKDIPPNVVAAGVPCRVI 182
>pdb|1G97|A Chain A, S.Pneumoniae Glmu Complexed With Udp-N-Acetylglucosamine
And Mg2+
pdb|1G95|A Chain A, Crystal Structure Of S.Pneumoniae Glmu, Apo Form
Length = 459
Score = 47.0 bits (110), Expect = 1e-06
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 70 GAKIGRGLFIDHGMGVVIGETT-----------EIGDDVTIYHG-VTLGGTGKFKGKRHP 117
GA++ G F++ G IGE T E+G +V G +T+ GK K K
Sbjct: 338 GAQVHIGNFVEV-KGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKT-- 394
Query: 118 TLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTITKD 170
+GN V VG+ + ++ + +GD+ +GA + + D+P + A+G + + I KD
Sbjct: 395 VIGNNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG-RGRQINKD 446
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A And Udp-N-Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine-1-
Phosphate Uridyltransferase, Glmu, Bound To Acetyl
Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine 1-
Phosphate Uridyltransferase, Glmu
Length = 468
Score = 45.1 bits (105), Expect = 4e-06
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 16/113 (14%)
Query: 70 GAKIGRGLFIDHGMGVVIGETT-----------EIGDDVTIYHG-VTLGGTGKFKGKRHP 117
GA++ G F++ G IGE T E+G +V G +T+ GK K K
Sbjct: 347 GAQVHIGNFVEV-KGSSIGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDGKNKYKT-- 403
Query: 118 TLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTITKD 170
+G+ V VG+ + ++ + +GD+ +GA + + D+P + A+G + + I KD
Sbjct: 404 VIGDNVFVGSNSTIIAPVELGDNSLVGAGSTITKDVPADAIAIG-RGRQINKD 455
>pdb|1QRM|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystal Structures Of The
Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRG|A Chain A, A Closer Look And The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QRF|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 213
Score = 35.0 bits (79), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 80 DHGMGVVIGETTEIGDDVTIYHGVTLGGTGK--------FKGKRHPT-LGNRVVVGAGAK 130
D GM + +G+ + + D V ++ T+ G+ GK + +GN V + ++
Sbjct: 61 DEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQ 120
Query: 131 VLGAICVGDDVKIGANAVV 149
V G VGDD IG A V
Sbjct: 121 VHGPAAVGDDTFIGMQAFV 139
>pdb|1QRE|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
pdb|1QQ0|A Chain A, Cobalt Substituted Carbonic Anhydrase From Methanosarcina
Thermophila
Length = 247
Score = 35.0 bits (79), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 80 DHGMGVVIGETTEIGDDVTIYHGVTLGGTGK--------FKGKRHPT-LGNRVVVGAGAK 130
D GM + +G+ + + D V ++ T+ G+ GK + +GN V + ++
Sbjct: 95 DEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQ 154
Query: 131 VLGAICVGDDVKIGANAVV 149
V G VGDD IG A V
Sbjct: 155 VHGPAAVGDDTFIGMQAFV 173
>pdb|1THJ|A Chain A, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|B Chain B, Carbonic Anhydrase From Methanosarcina
pdb|1THJ|C Chain C, Carbonic Anhydrase From Methanosarcina
Length = 214
Score = 35.0 bits (79), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 80 DHGMGVVIGETTEIGDDVTIYHGVTLGGTGK--------FKGKRHPT-LGNRVVVGAGAK 130
D GM + +G+ + + D V ++ T+ G+ GK + +GN V + ++
Sbjct: 62 DEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQ 121
Query: 131 VLGAICVGDDVKIGANAVV 149
V G VGDD IG A V
Sbjct: 122 VHGPAAVGDDTFIGMQAFV 140
>pdb|1QRL|A Chain A, A Closer Look At The Active Site Of Gamma-Carbonic
Anhydrases: High Resolution Crystallographic Studies Of
The Carbonic Anhydrase From Methanosarcina Thermophila
Length = 214
Score = 35.0 bits (79), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 80 DHGMGVVIGETTEIGDDVTIYHGVTLGGTGK--------FKGKRHPT-LGNRVVVGAGAK 130
D GM + +G+ + + D V ++ T+ G+ GK + +GN V + ++
Sbjct: 62 DEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYIGNNVSLAHQSQ 121
Query: 131 VLGAICVGDDVKIGANAVV 149
V G VGDD IG A V
Sbjct: 122 VHGPAAVGDDTFIGMQAFV 140
>pdb|1KK6|B Chain B, Crystal Structure Of Vat(D) (Form I)
pdb|1KK6|C Chain C, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|D Chain D, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|A Chain A, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|F Chain F, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KHR|D Chain D, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK6|A Chain A, Crystal Structure Of Vat(D) (Form I)
pdb|1KK4|B Chain B, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK4|C Chain C, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
pdb|1KK5|C Chain C, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|D Chain D, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|E Chain E, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|A Chain A, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|B Chain B, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|C Chain C, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|B Chain B, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK5|E Chain E, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KK5|F Chain F, Crystal Structure Of Vat(D) (Form Ii)
pdb|1KHR|A Chain A, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KHR|F Chain F, Crystal Structure Of Vat(D) In Complex With Virginiamycin
And Coenzyme A
pdb|1KK4|E Chain E, Crystal Structure Of Vat(D) In Complex With Acetyl-Coa
Length = 209
Score = 31.6 bits (70), Expect = 0.051
Identities = 15/49 (30%), Positives = 26/49 (52%)
Query: 119 LGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTI 167
+GN V +G ++ + +GD + AN+VV+ D+ A G+ A I
Sbjct: 116 IGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEI 164
Score = 27.3 bits (59), Expect = 0.96
Identities = 23/90 (25%), Positives = 38/90 (41%), Gaps = 9/90 (10%)
Query: 87 IGETTEIGDDVTIYHGVTLGGTGKFKGKRHP--TLGN----RVVVGAGAKVLGAICVGDD 140
IG+ IG VTI + G + G +P GN + + G +G+D
Sbjct: 63 IGKFCSIGPGVTI---IMNGANHRMDGSTYPFNLFGNGWEKHMPKLDQLPIKGDTIIGND 119
Query: 141 VKIGANAVVLSDLPTGSTAVGSKAKTITKD 170
V IG + V++ + G A+ + + KD
Sbjct: 120 VWIGKDVVIMPGVKIGDGAIVAANSVVVKD 149
>pdb|1HV9|B Chain B, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
pdb|1HV9|A Chain A, Structure Of E. Coli Glmu: Analysis Of Pyrophosphorylase
And Acetyltransferase Active Sites
Length = 456
Score = 30.4 bits (67), Expect = 0.11
Identities = 32/130 (24%), Positives = 50/130 (37%), Gaps = 33/130 (25%)
Query: 52 ARALSQLARFITGIEIHPGAKIGRGLFIDH---GMGVVIGETT-----EIGDDVTIYHGV 103
A + AR G E+ GA +G + + G G G T EIGD+V I G
Sbjct: 323 ACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGT 382
Query: 104 ---TLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAV 160
G KFK +GDDV +G++ +++ + G A
Sbjct: 383 ITCNYDGANKFK----------------------TIIGDDVFVGSDTQLVAPVTVGKGAT 420
Query: 161 GSKAKTITKD 170
+ T+T++
Sbjct: 421 IAAGTTVTRN 430
Score = 27.7 bits (60), Expect = 0.73
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 94 GDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVV 149
G DV I V + G + TLG+RV +G G + ++ +GDD +I VV
Sbjct: 269 GRDVEIDTNVIIEG--------NVTLGHRVKIGTGCVIKNSV-IGDDCEISPYTVV 315
>pdb|1XAT| Structure Of The Hexapeptide Xenobiotic Acetyltransferase From
Pseudomonas Aeruginosa
pdb|2XAT| Complex Of The Hexapeptide Xenobiotic Acetyltransferase With
Chloramphenicol And Desulfo-Coenzyme A
Length = 212
Score = 30.4 bits (67), Expect = 0.11
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 119 LGNRVVVGAGAKVLGAICVGDDVKIGANAVVLSDLPTGSTAVGSKAKTITK 169
+G+ V +G A + + VG IG+ A+V D+ + G+ A+TI K
Sbjct: 113 IGHEVWIGTEAMFMPGVRVGHGAIIGSRALVTGDVEPYAIVGGNPARTIRK 163
>pdb|1LXA| Udp N-Acetylglucosamine Acyltransferase
Length = 262
Score = 29.3 bits (64), Expect = 0.25
Identities = 22/76 (28%), Positives = 30/76 (38%), Gaps = 11/76 (14%)
Query: 85 VVIGETTEIGDDVTIYHGVTLGGTGKFKGK-----------RHPTLGNRVVVGAGAKVLG 133
V IG+ I + VTI+ G GG G T+GNR ++ A + G
Sbjct: 84 VEIGDRNRIRESVTIHRGTVQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAG 143
Query: 134 AICVGDDVKIGANAVV 149
+ V D IG V
Sbjct: 144 HVSVDDFAIIGGMTAV 159
>pdb|1FXJ|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|A Chain A, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
pdb|1FXJ|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase
pdb|1FWY|B Chain B, Crystal Structure Of N-Acetylglucosamine 1-Phosphate
Uridyltransferase Bound To Udp-Glcnac
Length = 331
Score = 27.7 bits (60), Expect = 0.73
Identities = 19/56 (33%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 94 GDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGANAVV 149
G DV I V + G + TLG+RV +G G + ++ +GDD +I VV
Sbjct: 269 GRDVEIDTNVIIEG--------NVTLGHRVKIGTGCVIKNSV-IGDDCEISPYTVV 315
>pdb|1TDT|B Chain B, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|C Chain C, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
pdb|1TDT|A Chain A, Three-Dimensional Structure Of Tetrahydrodipicolinate-N-
Succinlytransferase
Length = 259
Score = 27.3 bits (59), Expect = 0.96
Identities = 21/97 (21%), Positives = 41/97 (41%), Gaps = 4/97 (4%)
Query: 45 KRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGV----VIGETTEIGDDVTIY 100
K F + A + FI + + + G ++D G V +G +IG +V +
Sbjct: 100 KEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS 159
Query: 101 HGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICV 137
GV +GG + + + +GA ++V+ + V
Sbjct: 160 GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIV 196
>pdb|1KGQ|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With L-2-Aminopimelate
And Succinamide-Coa
pdb|3TDT| Complex Of Tetrahydrodipicolinate N-Succinyltransferase With
2-Amino-6-Oxopimelate And Coenzyme A
pdb|1KGT|A Chain A, Crystal Structure Of Tetrahydrodipicolinate N-
Succinyltransferase In Complex With Pimelate And
Succinyl- Coa
Length = 274
Score = 27.3 bits (59), Expect = 0.96
Identities = 21/97 (21%), Positives = 41/97 (41%), Gaps = 4/97 (4%)
Query: 45 KRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGV----VIGETTEIGDDVTIY 100
K F + A + FI + + + G ++D G V +G +IG +V +
Sbjct: 100 KEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS 159
Query: 101 HGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICV 137
GV +GG + + + +GA ++V+ + V
Sbjct: 160 GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIV 196
>pdb|1QJ8|A Chain A, Crystal Structure Of The Outer Membrane Protein Ompx From
Escherichia Coli
pdb|1QJ9|A Chain A, Crystal Structure Of The Outer Membrane Protein Ompx From
Escherichia Coli
Length = 148
Score = 26.2 bits (56), Expect = 2.1
Identities = 15/38 (39%), Positives = 19/38 (49%), Gaps = 1/38 (2%)
Query: 84 GVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGN 121
G+ G I D +IY GV G GKF+ +PT N
Sbjct: 64 GITAGPAYRINDWASIY-GVVGVGYGKFQTTEYPTYKN 100
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase E1b)
Length = 407
Score = 26.2 bits (56), Expect = 2.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 3 DLSYSLERVLQEDPAARNKW 22
DLSYSL RVL E A+ W
Sbjct: 48 DLSYSLVRVLDEQGDAQGPW 67
>pdb|1YTS| Molecule: Yersinia Protein Tyrosine Phosphatase; Synonyms: Yop51,
Pasteurella X, Ptpase, Yop51delta162, Cys(403)ser; Ec:
3.1.3.48; Mutation: Cys 235 Replaced By Arg, Cys 403
Replaced By Ser, C235r, C403s; Heterogen: Sulfate
Length = 278
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 114 KRHPTLGNRVVVGAGAKVLGAICVGD 139
K P + +R VG A+++GA+C+ D
Sbjct: 206 KLRPVIHSRAGVGRTAQLIGAMCMND 231
>pdb|1LYV|A Chain A, High-Resolution Structure Of The Catalytically Inactive
Yersinia Tyrosine Phosphatase C403a Mutant In Complex
With Phosphate
Length = 306
Score = 25.8 bits (55), Expect = 2.8
Identities = 10/26 (38%), Positives = 17/26 (64%)
Query: 114 KRHPTLGNRVVVGAGAKVLGAICVGD 139
K P + +R VG A+++GA+C+ D
Sbjct: 234 KLRPVIHSRAGVGRTAQLIGAMCMND 259
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 25.0 bits (53), Expect = 4.7
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 54 ALSQLARFITGI-EIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTG 109
++ LA+ I + +I+P AK+ L G+G + + D+ + G GGTG
Sbjct: 976 SIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISG-NSGGTG 1031
>pdb|1H7U|A Chain A, Hpms2-Atpgs
pdb|1H7U|B Chain B, Hpms2-Atpgs
Length = 365
Score = 24.3 bits (51), Expect = 8.1
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 3/45 (6%)
Query: 48 FYFIARALSQLARF--ITGIEIHPGAKIGRGLFIDHGMGVVIGET 90
F F ALS L +T H AK+G L DH G +I +T
Sbjct: 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHN-GKIIQKT 147
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 24.3 bits (51), Expect = 8.1
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 87 IGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVKIGAN 146
+ + E D I GVT+ F HP L + A +V +G ++ AN
Sbjct: 231 LAQIRETPDGYGIGAGVTIAALRAFAEGPHPALAGLLRRFASEQVRQVATIGGNI---AN 287
Query: 147 AVVLSDLPTGSTAVGS 162
+ D P A+G+
Sbjct: 288 GSPIGDGPPALIAMGA 303
>pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 24.3 bits (51), Expect = 8.1
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 3/45 (6%)
Query: 48 FYFIARALSQLARF--ITGIEIHPGAKIGRGLFIDHGMGVVIGET 90
F F ALS L +T H AK+G L DH G +I +T
Sbjct: 104 FGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHN-GKIIQKT 147
>pdb|1YPT|B Chain B, Protein-Tyrosine Phosphatase (Yersinia) (E.C.3.1.3.48)
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163 - 468) Mutant With Cys 235 Replaced
By Arg (C235r)
pdb|1YPT|A Chain A, Protein-Tyrosine Phosphatase (Yersinia) (E.C.3.1.3.48)
(Yop51,Pasteurella X,Ptpase,Yop51delta162) (Catalytic
Domain, Residues 163 - 468) Mutant With Cys 235 Replaced
By Arg (C235r)
Length = 305
Score = 24.3 bits (51), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 114 KRHPTLGNRVVVGAGAKVLGAICVGD 139
K P + R VG A+++GA+C+ D
Sbjct: 233 KLRPVIHCRAGVGRTAQLIGAMCMND 258
>pdb|1YTW| Yersinia Ptpase Complexed With Tungstate
pdb|1YTN| Hydrolase
Length = 306
Score = 24.3 bits (51), Expect = 8.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 114 KRHPTLGNRVVVGAGAKVLGAICVGD 139
K P + R VG A+++GA+C+ D
Sbjct: 234 KLRPVIHCRAGVGRTAQLIGAMCMND 259
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.323 0.142 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,033,148
Number of Sequences: 13198
Number of extensions: 44387
Number of successful extensions: 119
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 31
length of query: 171
length of database: 2,899,336
effective HSP length: 82
effective length of query: 89
effective length of database: 1,817,100
effective search space: 161721900
effective search space used: 161721900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)