BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645825|ref|NP_208003.1| hypothetical protein
[Helicobacter pylori 26695]
         (81 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1B3U|A  Chain A, Crystal Structure Of Constant Regulator...    23  7.5
pdb|1FW1|A  Chain A, Glutathione Transferase ZetaMALEYLACETO...    22  9.8

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
          Pp2a, Pr65alpha
 pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
          Pp2a, Pr65alpha
          Length = 588

 Score = 22.7 bits (47), Expect = 7.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)

Query: 43 SLKKLNG---ALGETRTRTRLLP 62
          S+KKL+    ALG  RTR+ LLP
Sbjct: 30 SIKKLSTIALALGVERTRSELLP 52



>pdb|1FW1|A Chain A, Glutathione Transferase ZetaMALEYLACETOACETATE ISOMERASE
          Length = 216

 Score = 22.3 bits (46), Expect = 9.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 27 PLRRIYRAKSEIIPTYSLKKLNGALGETRTRTRLLPPPPQDGVS 70
          P++++   K + I  +    +   L ETR   RLLP  P+   S
Sbjct: 55 PMKQVPTLKIDGITIHQSLAIIEYLEETRPTPRLLPQDPKKRAS 98



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.316    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,037
Number of Sequences: 13198
Number of extensions: 12120
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 2,899,336
effective HSP length: 57
effective length of query: 24
effective length of database: 2,147,050
effective search space: 51529200
effective search space used: 51529200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)