BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645826|ref|NP_208004.1| ATP synthase F0, subunit c
(atpE) [Helicobacter pylori 26695]
(105 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1C0V|A Chain A, Subunit C Of The F1fo Atp Synthase Of E... 39 9e-05
pdb|1C17|A Chain A, A1c12 Subcomplex Of F1fo Atp Synthase >... 39 9e-05
pdb|1ATY| F1fo Atp Synthase (E.C.3.6.1.34) Subunit C (Res... 39 9e-05
pdb|1L6T|A Chain A, Structure Of Ala24ASP61 TO ASP24ASN61 S... 38 2e-04
pdb|1IJP|A Chain A, Solution Structure Of Ala20proPRO64ALA ... 37 3e-04
pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase ... 25 0.99
pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E... 25 1.7
pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal... 24 2.9
pdb|1KEV|A Chain A, Structure Of Nadp-Dependent Alcohol Deh... 24 2.9
pdb|1LNR|G Chain G, Crystal Structure Of The Large Ribosoma... 23 3.7
pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Cha... 23 3.7
pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From ... 23 3.7
pdb|1HZP|A Chain A, Crystal Structure Of The Mycobacterium ... 23 4.9
pdb|2CAV|A Chain A, Canavalin From Jack Bean >gi|6729826|pd... 23 4.9
pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacteriu... 23 4.9
pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a... 23 6.4
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The... 22 8.3
pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima 22 8.3
>pdb|1C0V|A Chain A, Subunit C Of The F1fo Atp Synthase Of Escherichia Coli;
Nmr, 10 Structures
Length = 79
Score = 38.9 bits (89), Expect = 9e-05
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 34 LGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEA 85
+ A + +G+AA G AIG+G + G AR P + L T F+ M +++A
Sbjct: 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62
>pdb|1C17|A Chain A, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|B Chain B, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|C Chain C, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|D Chain D, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|E Chain E, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|F Chain F, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|G Chain G, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|H Chain H, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|I Chain I, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|J Chain J, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|K Chain K, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1C17|L Chain L, A1c12 Subcomplex Of F1fo Atp Synthase
pdb|1A91| Subunit C Of The F1fo Atp Synthase Of Escherichia Coli; Nmr, 10
Structures
pdb|1C99|A Chain A, Asp61 Deprotonated Form Of Subunit C Of The F1fo Atp
Synthase Of Escherichia Coli
pdb|1QO1|K Chain K, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|L Chain L, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|M Chain M, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|N Chain N, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|O Chain O, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|P Chain P, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|Q Chain Q, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|R Chain R, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|S Chain S, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
pdb|1QO1|T Chain T, Molecular Architecture Of The Rotary Motor In Atp
Synthase From Yeast Mitochondria
Length = 79
Score = 38.9 bits (89), Expect = 9e-05
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 34 LGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEA 85
+ A + +G+AA G AIG+G + G AR P + L T F+ M +++A
Sbjct: 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62
>pdb|1ATY| F1fo Atp Synthase (E.C.3.6.1.34) Subunit C (Residues 9 - 26, 52
- 79) Mutant With Ala 67 Replaced By Cys (A67c) (Nmr, 9
Structures)
Length = 79
Score = 38.9 bits (89), Expect = 9e-05
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 34 LGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEA 85
+ A + +G+AA G AIG+G + G AR P + L T F+ M +++A
Sbjct: 11 MAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62
>pdb|1L6T|A Chain A, Structure Of Ala24ASP61 TO ASP24ASN61 SUBSTITUTED
SUBUNIT C Of Escherichia Coli Atp Synthase
Length = 79
Score = 37.7 bits (86), Expect = 2e-04
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 34 LGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEA 85
+ A + +G+AA G AIG+G + G AR P + L T F+ M ++ A
Sbjct: 11 MAAAVMMGLAAIGDAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVNA 62
>pdb|1IJP|A Chain A, Solution Structure Of Ala20proPRO64ALA SUBSTITUTED SUBUNIT
C Of Escherichia Coli Atp Synthase
Length = 79
Score = 37.4 bits (85), Expect = 3e-04
Identities = 17/67 (25%), Positives = 34/67 (50%)
Query: 34 LGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVF 93
+ A + +G+ A G AIG+G + G AR P + L T F+ M +++A + +
Sbjct: 11 MAAAVMMGLPAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIAMIAVGL 70
Query: 94 AIIAIYS 100
+ +++
Sbjct: 71 GLYVMFA 77
>pdb|1DI0|A Chain A, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|B Chain B, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|D Chain D, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|C Chain C, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
pdb|1DI0|E Chain E, Crystal Structure Of Lumazine Synthase From Brucella
Abortus
Length = 158
Score = 25.4 bits (54), Expect = 0.99
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 8 FLALVGVAFAHDGGMGGMDMIKSYSILGAM 37
+ A+VG AF DGG+ D + + I G M
Sbjct: 70 YAAIVGAAFVIDGGIYDHDFVATAVINGMM 99
>pdb|1GDH|A Chain A, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
pdb|1GDH|B Chain B, D-Glycerate Dehydrogenase (Apo Form) (E.C.1.1.1.29)
Length = 320
Score = 24.6 bits (52), Expect = 1.7
Identities = 15/52 (28%), Positives = 22/52 (41%)
Query: 24 GMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATITGTARNPGVGGKLLTT 75
G D I + I +G A G + A + G+AR G G K++ T
Sbjct: 77 GFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRT 128
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
Length = 344
Score = 23.9 bits (50), Expect = 2.9
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 4 LALFFLALVGVAFAHDGGMGGMDMIKSYSILGAMIGL 40
+A + +ALV + + + GGM++ K ++G IG+
Sbjct: 70 IADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGI 106
>pdb|1KEV|A Chain A, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|B Chain B, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|C Chain C, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1KEV|D Chain D, Structure Of Nadp-Dependent Alcohol Dehydrogenase
pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|B Chain B, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|C Chain C, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
pdb|1PED|D Chain D, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
Length = 351
Score = 23.9 bits (50), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 38 IGLGIAAFG-GAIGMGNAAAATITGTARNPGVGGK 71
+G + G GA+G+ A A + G R GVG +
Sbjct: 166 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 200
>pdb|1LNR|G Chain G, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 144
Score = 23.5 bits (49), Expect = 3.7
Identities = 11/19 (57%), Positives = 13/19 (67%)
Query: 50 GMGNAAAATITGTARNPGV 68
G AAA T+ GTAR+ GV
Sbjct: 118 GSVEAAANTVAGTARSMGV 136
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 23.5 bits (49), Expect = 3.7
Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 8 FLALVGVAFAHDGGMGGMDM-IKSYSILGAM---------IGLGIAAFGGAIGMGNAAAA 57
FLA++ F G G IKS GA+ GL IA ++G
Sbjct: 18 FLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH------ 71
Query: 58 TITGTARNPGVGGKLLTTMFVAMAMIEAQVIYTLVFAIIA 97
I+G NP V LL + +++ +I V AI+A
Sbjct: 72 -ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVA 110
>pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Vanadate
pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
Complex With Tungstate
Length = 247
Score = 23.5 bits (49), Expect = 3.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 24 GMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATITGTAR 64
GMD++ S ++ GAM G + AI N + G AR
Sbjct: 101 GMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAAR 141
>pdb|1HZP|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Beta-
Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Beta-
Ketoacyl-Acyl Carrier Protein Synthase Iii
Length = 335
Score = 23.1 bits (48), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (45%), Gaps = 7/39 (17%)
Query: 33 ILGAMIGLGIAAFGGAIGM-------GNAAAATITGTAR 64
ILG + G A FG A+G G AA + GT +
Sbjct: 113 ILGFDLSAGCAGFGYALGAAADMIRGGGAATMLVVGTEK 151
>pdb|2CAV|A Chain A, Canavalin From Jack Bean
pdb|2CAU|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 23.1 bits (48), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (56%)
Query: 4 LALFFLALVGVAFAHDGGMGG 24
L + LA V +FAH G GG
Sbjct: 13 LGVVLLASVSASFAHSGHSGG 33
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 23.1 bits (48), Expect = 4.9
Identities = 14/39 (35%), Positives = 18/39 (45%), Gaps = 7/39 (17%)
Query: 33 ILGAMIGLGIAAFGGAIGM-------GNAAAATITGTAR 64
ILG + G A FG A+G G AA + GT +
Sbjct: 133 ILGFDLSAGCAGFGYALGAAADMIRGGGAATMLVVGTEK 171
>pdb|1CLW|A Chain A, Tailspike Protein From Phage P22, V331a Mutant
Length = 554
Score = 22.7 bits (47), Expect = 6.4
Identities = 17/52 (32%), Positives = 23/52 (43%), Gaps = 4/52 (7%)
Query: 23 GGMDMIKSYSILGAMIGLGIAAFGGAIGMGNAAAATIT----GTARNPGVGG 70
GG D I ++ L G G GG G+A++A G R+ GV G
Sbjct: 188 GGKDGIITFENLSGDWGKGNYVIGGRTSYGSASSAQFLRNNGGFERDGGVIG 239
>pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
Length = 327
Score = 22.3 bits (46), Expect = 8.3
Identities = 12/29 (41%), Positives = 12/29 (41%)
Query: 45 FGGAIGMGNAAAATITGTARNPGVGGKLL 73
F A G G AAAT T R K L
Sbjct: 98 FHAATGQGGGAAATFTAPGRTSTFSFKAL 126
>pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima
Length = 344
Score = 22.3 bits (46), Expect = 8.3
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 4 LALFFLALVGVAFAHDGGMGGMDMIKSYSILGAMIGL 40
+A + +ALV + + + GG ++ K ++G IG+
Sbjct: 70 IADYTVALVXLRYFINKAKGGXNLFKPRVVIGVPIGI 106
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.329 0.143 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,111
Number of Sequences: 13198
Number of extensions: 21524
Number of successful extensions: 66
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 18
length of query: 105
length of database: 2,899,336
effective HSP length: 81
effective length of query: 24
effective length of database: 1,830,298
effective search space: 43927152
effective search space used: 43927152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)