BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645827|ref|NP_208005.1| polynucleotide
phosphorylase (pnp) [Helicobacter pylori 26695]
(688 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces An... 308 1e-84
pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibi... 292 1e-79
pdb|1SRO| S1 Rna Binding Domain, Nmr, 20 Structures 35 0.028
pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3) 31 0.40
pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K Wi... 31 0.40
pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W... 30 0.89
pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 30 0.89
pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With... 30 0.89
pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From... 30 0.89
pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 30 0.89
pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+ >gi... 30 0.89
pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptoph... 30 0.89
pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t)... 30 0.89
pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro... 30 0.89
pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna Prim... 28 2.6
pdb|1AOS|A Chain A, Human Argininosuccinate Lyase >gi|29146... 28 2.6
pdb|1K62|B Chain B, Crystal Structure Of The Human Arginino... 28 2.6
pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine D... 28 4.4
pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybr... 27 5.8
pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic F... 27 5.8
pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphor... 27 5.8
pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pec... 27 5.8
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated ... 27 5.8
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolob... 27 7.5
pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exc... 27 7.5
pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin... 27 9.8
pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With ... 27 9.8
pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) F... 27 9.8
>pdb|1E3P|A Chain A, Tungstate Derivative Of Streptomyces Antibioticus Pnpase
Gpsi Enzyme
Length = 757
Score = 308 bits (789), Expect = 1e-84
Identities = 221/710 (31%), Positives = 371/710 (52%), Gaps = 44/710 (6%)
Query: 11 KTEEFALKQVAKQAT-SSLLYRLGKTIILASVCVEREPVSE-DFLPLVVQFLEKSYAAGK 68
+T F ++A+QA S++ Y T++L++ + P + DF PL V E+ YAAGK
Sbjct: 37 RTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQLDFFPLTVDVEERMYAAGK 96
Query: 69 IPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALN 128
IPG F +REGR + ILT RLIDR LRP F K R Q+ +++ + ++ V A+N
Sbjct: 97 IPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIMALNPDHLYDVVAIN 156
Query: 129 AASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGT-----KESLN 183
AASA+ LA + + R+A + +++ P+ + L + D+ V+G ++
Sbjct: 157 AASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIM 216
Query: 184 MIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQG----- 238
M+E + + + +++ E+ L + + ++ Q +L K ++
Sbjct: 217 MVEAEATEKTIQLVKDGAEAPTEEVVAAGL-DAAKPFIKVLCKAQADLAAKAAKPTGEFP 275
Query: 239 --IVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISE---AHSEFSLEEIE 293
+ + + +L+ L E+ + + +RE + + +E E +EI
Sbjct: 276 VFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEIS 335
Query: 294 LSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVG 353
+ + K+ +R +I +K R D R + ++R + E + +P H S LF RG+TQ L V
Sbjct: 336 AAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVT 395
Query: 354 VLGTDNDAQTHESLEHKAPI-KERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRAL 412
L N + + L+ +P+ ++R+M +YNFPP+ VGE +G+ RRE+GHG LA+RA+
Sbjct: 396 TL---NMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETGRVGSPKRREIGHGALAERAI 452
Query: 413 ETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSE 469
+ +E+ IR VSE L SNGS+SM SVCA +++L +GV + VAG+AMG++S+
Sbjct: 453 VPVLPTREEFPYAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLISQ 512
Query: 470 ---GQDHAI-LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAK 525
G+ H + L+DI G EDA GDMDFK+AG E +TA+Q+DTK+ GI +L AL QA+
Sbjct: 513 EINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQAR 572
Query: 526 EARKHILKIMHEAKEKIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKID 585
+AR HIL +M EA + + P + DKI E+IG ++I +I E +I
Sbjct: 573 DARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEIT 632
Query: 586 LNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSL 645
+ + G + I + +N + + + E + V + FGAF+SL
Sbjct: 633 I-EDDGTIYIGAADGPAAEAARATINGIANPTSP----EVGERILGSVVKTTTFGAFVSL 687
Query: 646 PKGGEGLL-----RK----QNMDKCQVVLKEGDSIRCRVISF-NKGKIAL 685
G +GLL RK + ++ + VL G ++ + ++GK++L
Sbjct: 688 LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737
>pdb|1E3H|A Chain A, Semet Derivative Of Streptomyces Antibioticus PnpaseGPSI
Enzyme
Length = 757
Score = 292 bits (747), Expect = 1e-79
Identities = 215/710 (30%), Positives = 360/710 (50%), Gaps = 44/710 (6%)
Query: 11 KTEEFALKQVAKQAT-SSLLYRLGKTIILASVCVEREPVSE-DFLPLVVQFLEKSYAAGK 68
+T F ++A+QA S++ Y T +L++ + P + DF PL V E+ YAAGK
Sbjct: 37 RTIRFETGRLARQAAGSAVAYLDDDTXVLSATTASKNPKDQLDFFPLTVDVEERXYAAGK 96
Query: 69 IPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIENDLQVSALN 128
IPG F +REGR + ILT RLIDR LRP F K R Q+ + + + ++ V A+N
Sbjct: 97 IPGSFFRREGRPSEDAILTCRLIDRPLRPSFKKGLRNEIQVVATIXALNPDHLYDVVAIN 156
Query: 129 AASAALFLAHIAPIKSVSACRIARMDNEFIINPSASLLNQSSLDLFVSGT-----KESLN 183
AASA+ LA + + R+A + +++ P+ + L + D V+G ++
Sbjct: 157 AASASTQLAGLPFSGPIGGVRVALIRGQWVAFPTHTELEDAVFDXVVAGRVLEDGDVAIX 216
Query: 184 MIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQG----- 238
+E + + + +++ E+ L + + ++ Q +L K ++
Sbjct: 217 XVEAEATEKTIQLVKDGAEAPTEEVVAAGL-DAAKPFIKVLCKAQADLAAKAAKPTGEFP 275
Query: 239 --IVFNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISE---AHSEFSLEEIE 293
+ + + +L+ L E+ + + +RE + + +E E +EI
Sbjct: 276 VFLDYQDDVLEALSAAVRPELSAALTIAGKQDREAELDRVKALAAEKLLPEFEGREKEIS 335
Query: 294 LSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVG 353
+ + K+ +R +I +K R D R + ++R + E + +P H S LF RG+TQ L V
Sbjct: 336 AAYRALTKSLVRERVIAEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVT 395
Query: 354 VLGTDNDAQTHESLEHKAPI-KERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRAL 412
L N + + L+ +P+ ++R+ +YNFPP+ VGE +G+ RRE+GHG LA+RA+
Sbjct: 396 TL---NXLRXEQQLDTLSPVTRKRYXHNYNFPPYSVGETGRVGSPKRREIGHGALAERAI 452
Query: 413 ETSIKNKEQ---VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSE 469
+ +E+ IR VSE L SNGS+S SVCA + +L +GV + VAG+A G++S+
Sbjct: 453 VPVLPTREEFPYAIRQVSEALGSNGSTSXGSVCASTXSLLNAGVPLKAPVAGIAXGLISQ 512
Query: 470 ---GQDHAI-LSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKLEILYQALLQAK 525
G+ H + L+DI G EDA GD DFK+AG E +TA+Q+DTK+ GI +L AL QA+
Sbjct: 513 EINGETHYVALTDILGAEDAFGDXDFKVAGTKEFVTALQLDTKLDGIPASVLAAALKQAR 572
Query: 526 EARKHILKIMHEAKEKIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKID 585
+AR HIL + EA + + P + DKI E+IG + I +I E +I
Sbjct: 573 DARLHILDVXXEAIDTPDEXSPNAPRIITVKIPVDKIGEVIGPKRQXINQIQEDTGAEIT 632
Query: 586 LNKPSGEVKIMGNKERVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSL 645
+ + G + I + +N + + + E + V + FGAF+SL
Sbjct: 633 I-EDDGTIYIGAADGPAAEAARATINGIANPTSP----EVGERILGSVVKTTTFGAFVSL 687
Query: 646 PKGGEGLL-----RK----QNMDKCQVVLKEGDSIRCRVISF-NKGKIAL 685
G +GLL RK + ++ + VL G ++ + ++GK++L
Sbjct: 688 LPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDSRGKLSL 737
>pdb|1SRO| S1 Rna Binding Domain, Nmr, 20 Structures
Length = 76
Score = 35.0 bits (79), Expect = 0.028
Identities = 21/69 (30%), Positives = 38/69 (54%), Gaps = 6/69 (8%)
Query: 625 IDEVLEAQVKRIVDFGAFLSLPKGGEGL-----LRKQNMDKCQVVLKEGDSIRCRVISFN 679
+ V +V RIVDFGAF+++ G EGL + + ++K L+ G + +V+ +
Sbjct: 5 VGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVD 64
Query: 680 K-GKIALDL 687
+ G+I L +
Sbjct: 65 RQGRIRLSI 73
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 31.2 bits (69), Expect = 0.40
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 551 TTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKERVLK---TKE 607
TT++ + D IIG+GG+ IK+I + I +++P + G+++R++ T++
Sbjct: 15 TTQV-TIPKDLARSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQD 68
Query: 608 FILNYLHSLDQELEQYA 624
I N + L ++QY+
Sbjct: 69 QIQNAQYLLQNSVKQYS 85
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 31.2 bits (69), Expect = 0.40
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 9/77 (11%)
Query: 551 TTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKERVLK---TKE 607
TT++ + D IIG+GG+ IK+I + I +++P + G+++R++ T++
Sbjct: 15 TTQV-TIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQD 68
Query: 608 FILNYLHSLDQELEQYA 624
I N + L ++QY+
Sbjct: 69 QIQNAQYLLQNSVKQYS 85
>pdb|1FUY|B Chain B, Crystal Structure Of Betaa169lBETAC170W DOUBLE MUTANT OF
Tryptophan Synthase Complexed With
5-Fluoro-Indole-Propanol Phosphate
Length = 396
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 295 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 345
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 346 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1K3U|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]aspartic Acid
pdb|1K7E|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]glycine Acid
pdb|1K7F|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With N-[1h-Indol-3-Yl-Acetyl]valine Acid
pdb|1QOP|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Propanol Phosphate
Length = 396
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 295 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 345
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 346 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1UBS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) With A Mutation Of Lys
87 ->thr In The B Subunit And In The Presence Of Ligand
L-Serine
pdb|2TRS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
pdb|2TSY|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 296 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 346
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 347 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1BKS|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) From Salmonella
Typhimurium
pdb|1TTQ|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Potassium At Room Temperature
pdb|1TTP|B Chain B, Tryptophan Synthase (E.C.4.2.1.20) In The Presence Of
Cesium, Room Temperature
pdb|1CW2|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylsulfinyl)-Butylphosphonic Acid
pdb|1C8V|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-Butylphosphonic Acid
pdb|1A5S|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate And
L-Ser Bound As Amino Acrylate To The Beta Site
pdb|1C29|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxyphenylthio)-1-Butenylphosphonic Acid
pdb|1C9D|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Hydroxy-4-Fluorophenylthio)-Butylphosphonic Acid
pdb|1CX9|B Chain B, Crystal Structure Of The Complex Of Bacterial Tryptophan
Synthase With The Transition State Analogue Inhibitor
4-(2- Aminophenylthio)-Butylphosphonic Acid
Length = 397
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 296 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 346
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 347 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1A50|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With 5-Fluoroindole Propanol Phosphate
pdb|2WSY|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Length = 396
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 295 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 345
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 346 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1BEU|B Chain B, Trp Synthase (D60n-Ipp-Ser) With K+
pdb|1A5A|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant
(Alphad60n) Tryptophan Synthase Alpha2beta2 Complex
Reveals The Correct Orientation Of Active Site Alpha Glu
49
pdb|1A5B|B Chain B, Cryo-Crystallography Of A True Substrate,
Indole-3-Glycerol Phosphate, Bound To A Mutant (Alpha
D60n) Tryptophan Synthase Alpha2beta2 Complex Reveals
The Correct Orientation Of Active Site Alpha Glu 49
Length = 397
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 296 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 346
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 347 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1QOQ|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
Complexed With Indole Glycerol Phosphate
Length = 396
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 295 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 345
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 346 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|2TYS|B Chain B, Crystal Structures Of Mutant (Betak87t) Tryptophan
Synthase Alpha2 Beta2 Complex With Ligands Bound To The
Active Sites Of The Alpha And Beta Subunits Reveal
Ligand-Induced Conformational Changes
Length = 397
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 296 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 346
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 347 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 387
>pdb|1K7X|B Chain B, Crystal Structure Of The Beta-Ser178pro Mutant Of
Tryptophan Synthase
pdb|1K8Y|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
D,L-Alpha-Glycerol-3-Phosphate
pdb|1K8Z|B Chain B, Crystal Structure Of The Tryptophan Synthase
Beta-Ser178pro Mutant Complexed With
N-[1h-Indol-3-Yl-Acetyl]glycine Acid
Length = 396
Score = 30.0 bits (66), Expect = 0.89
Identities = 31/107 (28%), Positives = 45/107 (41%), Gaps = 18/107 (16%)
Query: 454 EIYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIK 513
E Y + AG + S G HA L+ I G D+ + E + A + + GI
Sbjct: 295 ESYSISAG--LDFPSVGPQHAYLNSI-------GRADYVSITDDEALEAFKTLCRHEGII 345
Query: 514 LEILYQALLQAKEARKHILKIMHEAKEK---IVINFSHLPTTEIFNV 557
L++ A H LK+M E EK +V+N S +IF V
Sbjct: 346 ------PALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTV 386
>pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
Length = 698
Score = 28.5 bits (62), Expect = 2.6
Identities = 36/135 (26%), Positives = 56/135 (40%), Gaps = 22/135 (16%)
Query: 465 GMVSEGQDHAI--LSDISGLEDAEGDM---DFKIAGNLEGITA---MQMDTKMSGIKLEI 516
G V+ HA L+ I G+ G+ F +L+GIT +Q SG++L
Sbjct: 418 GAVTGRATHAFPNLAQIPGVRSPYGEQCRAAFGAEHHLDGITGKPWVQAGIDASGLELRC 477
Query: 517 L--YQALLQAKEARKHILKIMHEAKEKIVINFSHLPTTE---------IFNVAPDKIVEI 565
L + A E IL K +I + LPT + ++ +KI +I
Sbjct: 478 LAHFMARFDNGEYAHEILNGDIHTKNQIA---AELPTRDNAKTFIYGFLYGAGDEKIGQI 534
Query: 566 IGQGGRVIKEIVEKF 580
+G G KE+ +KF
Sbjct: 535 VGAGKERGKELKKKF 549
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 28.5 bits (62), Expect = 2.6
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 10/66 (15%)
Query: 569 GGR---VIKEIVEKFEVKIDLNKPSGEVKIMGNK-------ERVLKTKEFILNYLHSLDQ 618
GGR + I+EKF I ++ EV + G+K + L TK + LH LD+
Sbjct: 10 GGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDK 69
Query: 619 ELEQYA 624
E++A
Sbjct: 70 VAEEWA 75
>pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 28.5 bits (62), Expect = 2.6
Identities = 21/66 (31%), Positives = 32/66 (47%), Gaps = 10/66 (15%)
Query: 569 GGR---VIKEIVEKFEVKIDLNKPSGEVKIMGNK-------ERVLKTKEFILNYLHSLDQ 618
GGR + I+EKF I ++ EV + G+K + L TK + LH LD+
Sbjct: 10 GGRFVGAVDPIMEKFNASIAYDRHLWEVDVQGSKAYSRGLEKAGLLTKAEMDQILHGLDK 69
Query: 619 ELEQYA 624
E++A
Sbjct: 70 VAEEWA 75
>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
Length = 337
Score = 27.7 bits (60), Expect = 4.4
Identities = 20/68 (29%), Positives = 34/68 (49%), Gaps = 7/68 (10%)
Query: 542 IVINFSHLPTTEIFNVA---PDKIVEIIGQGGRVIKEIVEKFE--VKIDL--NKPSGEVK 594
+VI+ + ++ +A P +V ++ GGR+ V K E VKIDL + G +
Sbjct: 14 VVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73
Query: 595 IMGNKERV 602
+ +ERV
Sbjct: 74 LSTPEERV 81
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 27.3 bits (59), Expect = 5.8
Identities = 48/212 (22%), Positives = 86/212 (39%), Gaps = 37/212 (17%)
Query: 422 VIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDISG 481
V+RL ++ E+N S + VC+ A+ G L + VA + +G I+ SG
Sbjct: 175 VLRLAKDLAENNKGSRVLIVCSEITAILFHGPNENHLDSLVAQALFGDGAAALIVG--SG 232
Query: 482 LEDAEGDMDFKIAGNLEGI-----TAMQMDTKMSGIKLEILYQALLQAKEARKHILKIMH 536
A F+I + I AM++ + G+ ++ ++ + K +
Sbjct: 233 PHLAVERPIFEIVSTDQTILPDTEKAMKLHLREGGLTFQL-------HRDVPLMVAKNIE 285
Query: 537 EAKEKIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIM 596
A EK + S L T+ + + ++ GGR I + VE+ K++L
Sbjct: 286 NAAEKAL---SPLGITDW-----NSVFWMVHPGGRAILDQVER---KLNL---------- 324
Query: 597 GNKERVLKTKEFILNYLHSLDQELEQYAIDEV 628
KE L+ +L+ +L + IDEV
Sbjct: 325 --KEDKLRASRHVLSEYGNLISACVLFIIDEV 354
>pdb|1C03|A Chain A, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|B Chain B, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|C Chain C, Crystal Structure Of Ypd1p (Triclinic Form)
pdb|1C03|D Chain D, Crystal Structure Of Ypd1p (Triclinic Form)
Length = 168
Score = 27.3 bits (59), Expect = 5.8
Identities = 30/113 (26%), Positives = 48/113 (41%), Gaps = 7/113 (6%)
Query: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQGIVFN 242
N+ E+ +LG L L L+ + + ++ E F P++ EL S + N
Sbjct: 55 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFF-PNKTELVNTLSDKSIIN 113
Query: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELS 295
+D DE IK I+ E IA+ ++++ EF L IELS
Sbjct: 114 GINID-----EDDEEIK-IQVDDKDENSIYLILIAKALNQSRLEFKLARIELS 160
>pdb|1QSP|A Chain A, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
pdb|1QSP|B Chain B, Crystal Structure Of The Yeast Phosphorelay Protein Ypd1
Length = 165
Score = 27.3 bits (59), Expect = 5.8
Identities = 30/113 (26%), Positives = 48/113 (41%), Gaps = 7/113 (6%)
Query: 183 NMIEMRSLGQKLNALEEPLMLEALELAQKSLEETCTLYEEIFTPHQNELFFKESQGIVFN 242
N+ E+ +LG L L L+ + + ++ E F P++ EL S + N
Sbjct: 53 NLTELDNLGHFLKGSSAALGLQRIAWVCERIQNLGRKMEHFF-PNKTELVNTLSDKSIIN 111
Query: 243 ERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELS 295
+D DE IK I+ E IA+ ++++ EF L IELS
Sbjct: 112 GINID-----EDDEEIK-IQVDDKDENSIYLILIAKALNQSRLEFKLARIELS 158
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JRG|B Chain B, Crystal Structure Of The R3 Form Of Pectate Lyase A,
Erwinia Chrysanthemi
pdb|1JTA|A Chain A, Crystal Structure Of Pectate Lyase A (C2 Form)
Length = 361
Score = 27.3 bits (59), Expect = 5.8
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 139 IAPIKSVSACRIARMDNEFIINPSASLLNQSSLDL 173
IA + + AC++ + N I + + S+LN S++DL
Sbjct: 289 IANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDL 323
>pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
Length = 342
Score = 27.3 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 272 VFNEIARK--ISEAHSEFSLEEIELSLEKVKKTEIRRMIIKDKIRPD 316
VF EIAR+ I H ++ L +L E+R+++ + K+RP+
Sbjct: 246 VFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN 292
>pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
Length = 354
Score = 26.9 bits (58), Expect = 7.5
Identities = 43/207 (20%), Positives = 90/207 (42%), Gaps = 48/207 (23%)
Query: 455 IYDLVAGVAMGMVSEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIKL 514
IY+ + M ++++ HA +++ +++A D+ K+ GN E +GI+L
Sbjct: 80 IYEAFSNRIMNLLNK---HADKIEVASIDEAYLDVTNKVEGNFE-----------NGIEL 125
Query: 515 EILYQALLQAKEARKHILKIMHEAKEKIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIK 574
A++ ++ IL+ KEKI + P + + DK G VI+
Sbjct: 126 ---------ARKIKQEILE-----KEKITVTVGVAPNKILAKIIADKSKP---NGLGVIR 168
Query: 575 EI-VEKFEVKIDLNKPSGEVKIMG---NKERVLKTKEFILNYLHSLDQ-----------E 619
V+ F ++D+++ G ++ N+ + K ++ + + L++ +
Sbjct: 169 PTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLK 228
Query: 620 LEQYAIDEVLEAQVKRIVDFGAFLSLP 646
L Q E +E + K + G +L+LP
Sbjct: 229 LAQNKYSEPVENKSK--IPHGRYLTLP 253
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
pdb|1DKG|B Chain B, Crystal Structure Of The Nucleotide Exchange Factor Grpe
Bound To The Atpase Domain Of The Molecular Chaperone
Dnak
Length = 197
Score = 26.9 bits (58), Expect = 7.5
Identities = 20/66 (30%), Positives = 33/66 (49%), Gaps = 1/66 (1%)
Query: 267 SERENVFNEIARKISEAHSEFSLEEIELSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPI 326
+E EN+ I +AH +F+LE+ L V + R + + DK PD A+ E +
Sbjct: 67 AEMENLRRRTELDIEKAH-KFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIEL 125
Query: 327 LIESDL 332
++S L
Sbjct: 126 TLKSML 131
>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (Gimc)
Length = 133
Score = 26.6 bits (57), Expect = 9.8
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 411 ALETSIKNKEQVIRLVSEILESNGSSSMASVCAGSL---ALYASGVEIYDLVAGVAMGMV 467
A+ +I E + + +S+I +GS ++ V AGS L + I + AGVA+
Sbjct: 26 AVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKN 85
Query: 468 SEGQDHAILSDISGLEDAEGDMDFKIAGNLEGITAMQM 505
E +I S + LE K+ NL IT + M
Sbjct: 86 FEDAMESIKSQKNELESTLQ----KMGENLRAITDIMM 119
>pdb|1KF6|A Chain A, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1KF6|M Chain M, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
Hqno
pdb|1L0V|A Chain A, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1L0V|M Chain M, Quinol-Fumarate Reductase With Menaquinol Molecules
pdb|1KFY|A Chain A, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
pdb|1KFY|M Chain M, Quinol-Fumarate Reductase With Quinol Inhibitor 2-[1-(4-
Chloro-Phenyl)-Ethyl]-4,6-Dinitro-Phenol
Length = 602
Score = 26.6 bits (57), Expect = 9.8
Identities = 28/104 (26%), Positives = 45/104 (42%), Gaps = 18/104 (17%)
Query: 386 FCVGEASSIGAASRRELGHGNLAKRALETSIKNKEQVIRLVSEILESNGSSSMASVCAGS 445
F VGE SS+G LG +LA+ + + ++ R + NG+ + +
Sbjct: 376 FAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAAT---AGNGNEA-------A 425
Query: 446 LALYASGVE--IYDLVAGVAMGMVSEGQDHAILSDISGLEDAEG 487
+ A+GVE + DLV G++ A + D GL EG
Sbjct: 426 IEAQAAGVEQRLKDLV------NQDGGENWAKIRDEMGLAMEEG 463
>pdb|1DK5|A Chain A, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
pdb|1DK5|B Chain B, Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
Length = 322
Score = 26.6 bits (57), Expect = 9.8
Identities = 27/127 (21%), Positives = 54/127 (42%), Gaps = 29/127 (22%)
Query: 246 LDLLKNQYFDEIIKGIESS------------ALSERENVFNEIARKISEAHSEFSLEEIE 293
L+ K+++ ++I+K +E L E+ F E+ R +A + EE
Sbjct: 213 LNHYKDEHGEDILKQLEDGDEFVALLRATIKGLVYPEHYFVEVLR---DAINRRGTEEDH 269
Query: 294 LSLEKVKKTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVG 353
L+ + E+ II D+ + + D +P+ + TRG +S+++
Sbjct: 270 LTRVIATRAEVDLKIIADEYQ--------------KRDSIPLGRAIAKDTRGDYESMLLA 315
Query: 354 VLGTDND 360
+LG + D
Sbjct: 316 LLGQEED 322
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.318 0.135 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,461,800
Number of Sequences: 13198
Number of extensions: 136307
Number of successful extensions: 413
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 37
length of query: 688
length of database: 2,899,336
effective HSP length: 95
effective length of query: 593
effective length of database: 1,645,526
effective search space: 975796918
effective search space used: 975796918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)