BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645828|ref|NP_208006.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(240 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.... 30 0.32
pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substr... 30 0.32
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid >... 30 0.32
pdb|1FUO|A Chain A, Fumarase C With Bound Citrate >gi|19421... 30 0.32
pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish ... 30 0.32
pdb|1IAN| Human P38 Map Kinase Inhibitor Complex 25 6.1
pdb|1WFC| Structure Of Apo, Unphosphorylated, P38 Mitogen... 25 6.1
pdb|1A9U| The Complex Structure Of The Map Kinase P38SB20... 25 6.1
pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated ... 25 6.1
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 DIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P+V N Q + L DG+ S + C V +E + + + +L NE +
Sbjct: 357 ELNVFRPMVIHNFLQSVRLLADGMES-FNKHCAVGIEPNRERINQLLNESL 406
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 DIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P+V N Q + L DG+ S + C V +E + + + +L NE +
Sbjct: 357 ELNVFRPMVIHNFLQSVRLLADGMES-FNKHCAVGIEPNRERINQLLNESL 406
>pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 DIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P+V N Q + L DG+ S + C V +E + + + +L NE +
Sbjct: 357 ELNVFRPMVIHNFLQSVRLLADGMES-FNKHCAVGIEPNRERINQLLNESL 406
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
Length = 467
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 DIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P+V N Q + L DG+ S + C V +E + + + +L NE +
Sbjct: 357 ELNVFRPMVIHNFLQSVRLLADGMES-FNKHCAVGIEPNRERINQLLNESL 406
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 29.6 bits (65), Expect = 0.32
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 174 DIYILTPIVAQNVAQGLESLCDGVISVYRPECFVSVEHHYKELKRLSNEEV 224
++ + P+V N Q + L DG+ S + C V +E + + + +L NE +
Sbjct: 357 ELNVFRPMVIHNFLQSVRLLADGMES-FNKHCAVGIEPNRERINQLLNESL 406
>pdb|1IAN| Human P38 Map Kinase Inhibitor Complex
Length = 366
Score = 25.4 bits (54), Expect = 6.1
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
Query: 14 ITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDIL 73
+T + M F N N L +DL + +++ S + A ALA + A Y
Sbjct: 268 LTQMPKMNFANVFIGANPLA-------VDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 320
Query: 74 FLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYV 114
EP+ P + ES D++++E ++D + +V
Sbjct: 321 DDEPVADPYDQS------FESRDLLIDEWKSLTYDEVISFV 355
>pdb|1WFC| Structure Of Apo, Unphosphorylated, P38 Mitogen Activated Protein
Kinase P38 (P38 Map Kinase) The Mammalian Homologue Of
The Yeast Hog1 Protein
Length = 366
Score = 25.4 bits (54), Expect = 6.1
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
Query: 14 ITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDIL 73
+T + M F N N L +DL + +++ S + A ALA + A Y
Sbjct: 268 LTQMPKMNFANVFIGANPLA-------VDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 320
Query: 74 FLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYV 114
EP+ P + ES D++++E ++D + +V
Sbjct: 321 DDEPVADPYDQS------FESRDLLIDEWKSLTYDEVISFV 355
>pdb|1A9U| The Complex Structure Of The Map Kinase P38SB203580
pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995
pdb|1BL7|A Chain A, The Complex Structure Of The Map Kinase P38SB220025
Length = 379
Score = 25.4 bits (54), Expect = 6.1
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
Query: 14 ITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDIL 73
+T + M F N N L +DL + +++ S + A ALA + A Y
Sbjct: 281 LTQMPKMNFANVFIGANPLA-------VDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 333
Query: 74 FLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYV 114
EP+ P + ES D++++E ++D + +V
Sbjct: 334 DDEPVADPYDQS------FESRDLLIDEWKSLTYDEVISFV 368
>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In
Complex With 4-[3-Methylsulfanylanilino]-6,7-
Dimethoxyquinazoline
pdb|1KV1|A Chain A, P38 Map Kinase In Complex With Inhibitor 1
pdb|1KV2|A Chain A, Human P38 Map Kinase In Complex With Birb 796
Length = 360
Score = 25.4 bits (54), Expect = 6.1
Identities = 24/101 (23%), Positives = 43/101 (41%), Gaps = 13/101 (12%)
Query: 14 ITDIEGMRFINEEDALNKLINEIHTRHIDLKDSIMLALSFNALYLAHALAQKFGATYDIL 73
+T + M F N N L +DL + +++ S + A ALA + A Y
Sbjct: 262 LTQMPKMNFANVFIGANPLA-------VDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP 314
Query: 74 FLEPILAPLNSKCEIALVSESMDIVMNESLINSFDITLDYV 114
EP+ P + ES D++++E ++D + +V
Sbjct: 315 DDEPVADPYDQS------FESRDLLIDEWKSLTYDEVISFV 349
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.138 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,324,029
Number of Sequences: 13198
Number of extensions: 51495
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 9
length of query: 240
length of database: 2,899,336
effective HSP length: 86
effective length of query: 154
effective length of database: 1,764,308
effective search space: 271703432
effective search space used: 271703432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)