BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645829|ref|NP_208007.1| hypothetical protein
[Helicobacter pylori 26695]
(80 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxida... 27 0.31
pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxida... 27 0.31
pdb|1NAR| Narbonin 25 1.5
pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Hist... 23 7.5
pdb|1J83|A Chain A, Structure Of Fam17 Carbohydrate Binding... 22 9.9
pdb|1J84|A Chain A, Structure Of Fam17 Carbohydrate Binding... 22 9.9
>pdb|1IVU|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1IVU|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Initial Intermediate In
Topaquinone Biogenesis
pdb|1AVK| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 27.3 bits (59), Expect = 0.31
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 24/67 (35%)
Query: 2 SADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILT-----------GDPNQPI 50
S DVG+D+R VVL+ I F+ ++ RPI+ GDP+ PI
Sbjct: 244 SLDVGFDVREGVVLH------------NIAFRDGDRLRPIINRASIAEMVVPYGDPS-PI 290
Query: 51 RVFENNY 57
R ++N +
Sbjct: 291 RSWQNYF 297
>pdb|1IVV|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVV|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Early Intermediate In
Topaquinone Biogenesis
pdb|1IVW|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVW|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Late Intermediate In
Topaquinone Biogenesis
pdb|1IVX|A Chain A, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1IVX|B Chain B, Crystal Structure Of Copper Amine Oxidase From
Arthrobacter Globiformis: Holo Form Generated By
Biogenesis In Crystal.
pdb|1AV4| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
pdb|1AVL| Crystal Structures Of The Copper-Containing Amine Oxidase From
Arthrobacter Globiformis In The Holo- And Apo-Forms:
Implications For The Biogenesis Of Topa Quinone
Length = 638
Score = 27.3 bits (59), Expect = 0.31
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 24/67 (35%)
Query: 2 SADVGYDIRNNVVLNWNVGIYKKIRCFGIGFQFVNQRRPILT-----------GDPNQPI 50
S DVG+D+R VVL+ I F+ ++ RPI+ GDP+ PI
Sbjct: 244 SLDVGFDVREGVVLH------------NIAFRDGDRLRPIINRASIAEMVVPYGDPS-PI 290
Query: 51 RVFENNY 57
R ++N +
Sbjct: 291 RSWQNYF 297
>pdb|1NAR| Narbonin
Length = 290
Score = 25.0 bits (53), Expect = 1.5
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 6/37 (16%)
Query: 30 IGFQFVNQRRPILTGDPNQPIRVFENNYVKLELDFSP 66
+ +QF NQ++P+ T D F + LE D+ P
Sbjct: 188 VDYQFSNQQKPVSTDD------AFVEIFKSLEKDYHP 218
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 22.7 bits (47), Expect = 7.5
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 42 LTGDPNQPIRVFEN 55
+ G+PNQPI+++ N
Sbjct: 94 MQGNPNQPIKLYYN 107
>pdb|1J83|A Chain A, Structure Of Fam17 Carbohydrate Binding Module From
Clostridium Cellulovorans
pdb|1J83|B Chain B, Structure Of Fam17 Carbohydrate Binding Module From
Clostridium Cellulovorans
Length = 180
Score = 22.3 bits (46), Expect = 9.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 44 GDPNQPIRVFENNYV 58
G+P + IRV+ NN+V
Sbjct: 110 GNPTRAIRVWTNNFV 124
>pdb|1J84|A Chain A, Structure Of Fam17 Carbohydrate Binding Module From
Clostridium Cellulovorans With Bound Cellotetraose
Length = 180
Score = 22.3 bits (46), Expect = 9.9
Identities = 8/15 (53%), Positives = 12/15 (79%)
Query: 44 GDPNQPIRVFENNYV 58
G+P + IRV+ NN+V
Sbjct: 110 GNPTRAIRVWTNNFV 124
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.324 0.143 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,053
Number of Sequences: 13198
Number of extensions: 18819
Number of successful extensions: 35
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 6
length of query: 80
length of database: 2,899,336
effective HSP length: 56
effective length of query: 24
effective length of database: 2,160,248
effective search space: 51845952
effective search space used: 51845952
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)