BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645830|ref|NP_208008.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(660 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1MNG|A Chain A, Manganese Superoxide Dismutase (E.C.1.1... 28 2.5
pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosoma... 28 3.3
pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FR... 28 3.3
pdb|1H6F|B Chain B, Human Tbx3, A Transcription Factor Resp... 27 5.5
pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dism... 27 7.2
pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn... 27 7.2
pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondria... 27 7.2
pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Ami... 27 7.2
pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Ami... 27 7.2
pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Ami... 27 7.2
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycos... 27 9.5
pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mu... 27 9.5
>pdb|1MNG|A Chain A, Manganese Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|1MNG|B Chain B, Manganese Superoxide Dismutase (E.C.1.15.1.1) Complexed
With Azide
pdb|3MDS|A Chain A, Maganese Superoxide Dismutase From Thermus Thermophilus
pdb|3MDS|B Chain B, Maganese Superoxide Dismutase From Thermus Thermophilus
Length = 203
Score = 28.5 bits (62), Expect = 2.5
Identities = 9/22 (40%), Positives = 17/22 (76%)
Query: 598 GFSPLTGLNIFGNVFYSFYQNR 619
GF+P+ G++++ + +Y YQNR
Sbjct: 158 GFTPIVGIDVWEHAYYLKYQNR 179
>pdb|1LNR|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
Length = 166
Score = 28.1 bits (61), Expect = 3.3
Identities = 15/46 (32%), Positives = 20/46 (42%)
Query: 67 KVRYDTKTKEALLEGNIKVYRGEGLLVKTDYVKLSLNEKYEIIFPF 112
KVR +T+ EG + G G K+S E E +FPF
Sbjct: 38 KVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF 83
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI
Length = 230
Score = 28.1 bits (61), Expect = 3.3
Identities = 21/71 (29%), Positives = 33/71 (45%), Gaps = 2/71 (2%)
Query: 379 KYLNSLYFRNLLYSVDYQFRNTAREIGYGYVQNALNVPVGLQFSLFKKYLS-LGLWNDLQ 437
K + L NL Y Y + +GY V + GL +LFKK L+ + W D
Sbjct: 33 KVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAEMKTWTDKG 92
Query: 438 LS-NVALMQSK 447
+ ++A++ SK
Sbjct: 93 VQCDLAMIGSK 103
>pdb|1H6F|B Chain B, Human Tbx3, A Transcription Factor Responsible For
Ulnar-Mammary Syndrome , Bound To A Palindromic Dna Site
pdb|1H6F|A Chain A, Human Tbx3, A Transcription Factor Responsible For
Ulnar-Mammary Syndrome , Bound To A Palindromic Dna Site
Length = 193
Score = 27.3 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 480 EYNKLFHTIQLEAIFNIPYYTFKNGLFSQNMY 511
+Y FH ++ I +PY TF+ LF + +
Sbjct: 129 KYQPRFHIVRANDILKLPYSTFRTYLFPETEF 160
>pdb|1VAR|A Chain A, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
pdb|1VAR|B Chain B, Mitochondrial Manganese Superoxide Dismutase Variant With
Ile 58 Replaced By Thr
Length = 198
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 141 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
>pdb|1N0J|A Chain A, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
pdb|1N0J|B Chain B, The Structure Of Human Mitochondrial Mn3+ Superoxide
Dismutase Reveals A Novel Tetrameric Interface Of Two 4-
Helix Bundles
Length = 199
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 142 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 172
>pdb|1AP6|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP6|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|A Chain A, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
pdb|1AP5|B Chain B, Tyr34->phe Mutant Of Human Mitochondrial Manganese
Superoxide Dismutase
Length = 198
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 141 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
>pdb|1N0N|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
pdb|1N0N|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His30 In Human Manganese Superoxide
Dismutase
Length = 199
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 142 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 172
>pdb|1LUV|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUV|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1MSD|A Chain A, Manganese Superoxide Dismutase (E.C.1.15.1.1)
pdb|1MSD|B Chain B, Manganese Superoxide Dismutase (E.C.1.15.1.1)
Length = 198
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 141 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
>pdb|1LUW|A Chain A, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
pdb|1LUW|B Chain B, Catalytic And Structural Effects Of Amino-Acid
Substitution At His 30 In Human Manganese Superoxide
Dismutase: Insertion Of Val Cgamma Into The Substrate
Access Channel
Length = 198
Score = 26.9 bits (58), Expect = 7.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P + PL+ G PL G++++ + +Y Y+N
Sbjct: 141 PNQDPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
>pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
Length = 460
Score = 26.6 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 25/52 (47%), Gaps = 5/52 (9%)
Query: 77 ALLEGNIKVYRGEGLLVKTDYVKLSLNEKYEIIFPFYVQDSVSGIWVSADIA 128
A G+ VY L+K D V + +EK E ++P +QD GI D A
Sbjct: 102 AFRHGHTSVY-----LIKGDKVWVYTSEKNEKVYPKSLQDEFPGIPFPLDAA 148
>pdb|1QNM|A Chain A, Human Manganese Superoxide Dismutase Mutant Q143n
pdb|1QNM|B Chain B, Human Manganese Superoxide Dismutase Mutant Q143n
Length = 198
Score = 26.6 bits (57), Expect = 9.5
Identities = 10/31 (32%), Positives = 18/31 (57%)
Query: 588 PFRMPLESKIGFSPLTGLNIFGNVFYSFYQN 618
P PL+ G PL G++++ + +Y Y+N
Sbjct: 141 PNNDPLQGTTGLIPLLGIDVWEHAYYLQYKN 171
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.321 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,874,964
Number of Sequences: 13198
Number of extensions: 170299
Number of successful extensions: 357
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 12
length of query: 660
length of database: 2,899,336
effective HSP length: 94
effective length of query: 566
effective length of database: 1,658,724
effective search space: 938837784
effective search space used: 938837784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)