BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15645831|ref|NP_208009.1| hypothetical protein
[Helicobacter pylori 26695]
         (159 letters)

Database: /var/www/html/HP/blast_new/blast/db/pdbaa
           13,198 sequences; 2,899,336 total letters

Searching...........................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1HB7|A  Chain A, Quasi-Atomic Resolution Model Of Bacter...    25  3.2
pdb|1IWG|A  Chain A, Crystal Structure Of Bacterial Multidru...    24  9.3
pdb|1B48|A  Chain A, Crystal Structure Of Mgsta4-4 In Comple...    24  9.3
pdb|1XPA|    Solution Structure Of The Dna- And Rpa-Binding ...    24  9.3
pdb|1GUK|A  Chain A, Crystal Structure Of Murine Alpha-Class...    24  9.3
pdb|1D4U|A  Chain A, Interactions Of Human Nucleotide Excisi...    24  9.3

>pdb|1HB7|A Chain A, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
           Mutant, Obtained By Combined Cryo-Em And X-Ray
           Crystallography.
 pdb|1HB7|D Chain D, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
           Mutant, Obtained By Combined Cryo-Em And X-Ray
           Crystallography.
 pdb|1HB7|G Chain G, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
           Mutant, Obtained By Combined Cryo-Em And X-Ray
           Crystallography.
 pdb|1HB7|J Chain J, Quasi-Atomic Resolution Model Of Bacteriophage Prd1 Sus1
           Mutant, Obtained By Combined Cryo-Em And X-Ray
           Crystallography
          Length = 370

 Score = 25.4 bits (54), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)

Query: 52  ACDFLHSLYWLAN---PIYHSAFVAMGFII 78
           A DF   +Y+  N   PIY +A+ A+GF++
Sbjct: 319 ATDFPKGVYYCDNRDKPIYTAAYGAVGFVV 348



>pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
           Transporter Acrb
          Length = 1053

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 12/31 (38%), Positives = 18/31 (57%)

Query: 6   LEKEETEIIETLLMREKMRLCPLYWRILAFL 36
           ++KE   +IE  L   +MRL P+    LAF+
Sbjct: 953 MDKEGKGLIEATLDAVRMRLRPILMTSLAFI 983



>pdb|1B48|A Chain A, Crystal Structure Of Mgsta4-4 In Complex With Gsh
           Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
           The Other: Evidence Of Signaling Across Dimer Interface
           In Mgsta4-4
 pdb|1B48|B Chain B, Crystal Structure Of Mgsta4-4 In Complex With Gsh
           Conjugate Of 4-Hydroxynonenal In One Subunit And Gsh In
           The Other: Evidence Of Signaling Across Dimer Interface
           In Mgsta4-4
          Length = 221

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 8   KEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLS 47
           KE+ E  + +L R K R  P++ +IL    +  LV   LS
Sbjct: 114 KEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLS 153



>pdb|1XPA|   Solution Structure Of The Dna- And Rpa-Binding Domain Of The Human
           Repair Factor Xpa, Nmr, 1 Structure
          Length = 122

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 132 PFLWFVAFKNPYHRAWHEEK 151
           P L F+  KNP+H  W + K
Sbjct: 63  PPLKFIVKKNPHHSQWGDMK 82



>pdb|1GUK|A Chain A, Crystal Structure Of Murine Alpha-Class Gsta4-4
 pdb|1GUK|B Chain B, Crystal Structure Of Murine Alpha-Class Gsta4-4
          Length = 222

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 8   KEETEIIETLLMREKMRLCPLYWRILAFLTDGLLVAFLLS 47
           KE+ E  + +L R K R  P++ +IL    +  LV   LS
Sbjct: 115 KEKEESYDLILSRAKTRYFPVFEKILKDHGEAFLVGNQLS 154



>pdb|1D4U|A Chain A, Interactions Of Human Nucleotide Excision Repair Protein
           Xpa With Rpa70 And Dna: Chemical Shift Mapping And 15n
           Nmr Relaxation Studies
          Length = 111

 Score = 23.9 bits (50), Expect = 9.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 132 PFLWFVAFKNPYHRAWHEEK 151
           P L F+  KNP+H  W + K
Sbjct: 63  PPLKFIVKKNPHHSQWGDMK 82



  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.335    0.148    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 841,717
Number of Sequences: 13198
Number of extensions: 28867
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 6
length of query: 159
length of database: 2,899,336
effective HSP length: 81
effective length of query: 78
effective length of database: 1,830,298
effective search space: 142763244
effective search space used: 142763244
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 50 (23.9 bits)