BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15645835|ref|NP_208013.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(234 letters)
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
13,198 sequences; 2,899,336 total letters
Searching...........................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyroph... 187 1e-48
pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Dipho... 185 4e-48
pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fib... 28 0.92
pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fib... 28 0.92
pdb|1GPU|A Chain A, Transketolase Complex With Reaction Int... 27 2.7
pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed W... 27 2.7
pdb|1AY0|A Chain A, Identification Of Catalytically Importa... 27 2.7
pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1S... 27 2.7
pdb|1PBV| Sec7 Domain Of The Exchange Factor Arno 27 2.7
pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotox... 26 3.5
pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi >... 26 3.5
pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltrans... 26 3.5
pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. T... 26 3.5
pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Ave... 25 7.8
>pdb|1JP3|A Chain A, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
pdb|1JP3|B Chain B, Structure Of E.Coli Undecaprenyl Pyrophosphate Synthase
Length = 253
Score = 187 bits (474), Expect = 1e-48
Identities = 96/226 (42%), Positives = 138/226 (60%), Gaps = 1/226 (0%)
Query: 6 KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 65
+H+AII DGNGRWAK + K RA+GHK G K+++ + AN+ +E LTLYAFS+ENW RP
Sbjct: 19 RHVAIIXDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRP 78
Query: 66 KSEVDFLMKMLKKYLKDERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFT 125
EV L ++ L E + +N+R R IGD F+ L++ I + E T T
Sbjct: 79 AQEVSALXELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLT 138
Query: 126 QVLALNYGSKNELSRAFKSLLESPPSHINLLESLENEISNR-LDTHDLPEVDLLLRTGGE 184
+A NYG + ++ + + L E + ++ E N+ + H+L VDL++RTGGE
Sbjct: 139 LNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEXLNQHVCXHELAPVDLVIRTGGE 198
Query: 185 MRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFG 230
R+SNFLLWQ +YAEL+FT +LWPDF +D E ++ F R R+FG
Sbjct: 199 HRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFG 244
>pdb|1F75|A Chain A, Crystal Structure Of Undecaprenyl Diphosphate Synthase
From Micrococcus Luteus B-P 26
pdb|1F75|B Chain B, Crystal Structure Of Undecaprenyl Diphosphate Synthase
From Micrococcus Luteus B-P 26
Length = 249
Score = 185 bits (469), Expect = 4e-48
Identities = 96/228 (42%), Positives = 137/228 (59%), Gaps = 1/228 (0%)
Query: 6 KHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRP 65
KH+AIIMDGNGRWAK K R GH +G++T++ IT + ++ ++ LTLYAFSTENW RP
Sbjct: 22 KHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRP 81
Query: 66 KSEVDFLMKMLKKYLKDERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFT 125
K EV++LMK+ +L + N++ IG ++ + +L+ + T+H T
Sbjct: 82 KDEVNYLMKLPGDFLNTFLPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLT 141
Query: 126 QVLALNYGSKNELSRAFKSLLESPPS-HINLLESLENEISNRLDTHDLPEVDLLLRTGGE 184
V ALNYG + E+ A + + E S I+L E E + L T ++P+ +LL+RT GE
Sbjct: 142 LVFALNYGGRKEIISAVQLIAERYKSGEISLDEISETHFNEYLFTANMPDPELLIRTSGE 201
Query: 185 MRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGEL 232
RLSNFL+WQ SY+E F WPDF + L IS + R R+FG L
Sbjct: 202 ERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIYQNRHRRFGGL 249
>pdb|1M1J|A Chain A, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|D Chain D, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 491
Score = 28.1 bits (61), Expect = 0.92
Identities = 24/97 (24%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Query: 82 DERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGS-KNELSR 140
D+ + +NIR + + D + K I++ N + + Q L NYG EL R
Sbjct: 60 DQNYSQRIDNIR-QQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRR 118
Query: 141 AFKSLLESPPSHINLLESLENEISNRLDTHDLPEVDL 177
+L + + +N +++L+N I ++ EVD+
Sbjct: 119 RIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155
>pdb|1EI3|A Chain A, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|D Chain D, Crystal Structure Of Native Chicken Fibrinogen
Length = 491
Score = 28.1 bits (61), Expect = 0.92
Identities = 24/97 (24%), Positives = 45/97 (45%), Gaps = 2/97 (2%)
Query: 82 DERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGS-KNELSR 140
D+ + +NIR + + D + K I++ N + + Q L NYG EL R
Sbjct: 60 DQNYSQRIDNIR-QQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRR 118
Query: 141 AFKSLLESPPSHINLLESLENEISNRLDTHDLPEVDL 177
+L + + +N +++L+N I ++ EVD+
Sbjct: 119 RIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDI 155
>pdb|1GPU|A Chain A, Transketolase Complex With Reaction Intermediate
pdb|1GPU|B Chain B, Transketolase Complex With Reaction Intermediate
pdb|1TRK|A Chain A, Transketolase (E.C.2.2.1.1)
pdb|1TRK|B Chain B, Transketolase (E.C.2.2.1.1)
pdb|1NGS|A Chain A, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
pdb|1NGS|B Chain B, Complex Of Transketolase With Thiamin Diphosphate, Ca2+
And Acceptor Substrate Erythrose-4-Phosphate
Length = 680
Score = 26.6 bits (57), Expect = 2.7
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 12/81 (14%)
Query: 120 HFKDFTQVLALNYGSKNELSRAFKSLLES--PPSHINLL---------ESLENEISNRLD 168
HF+ + NE+S A+K+ LES PS I L S+E+
Sbjct: 489 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 548
Query: 169 THDLPEVDLLL-RTGGEMRLS 188
D+ D++L TG E+ LS
Sbjct: 549 LQDVANPDIILVATGSEVSLS 569
>pdb|1TKB|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKB|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
1'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKA|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
3'-Deazo-Thiamin Diphosphate And Calcium
pdb|1TKC|A Chain A, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
pdb|1TKC|B Chain B, Transketolase (E.C.2.2.1.1) Complexed With
6'-Methyl-Thiamin Diphosphate And Calcium
Length = 678
Score = 26.6 bits (57), Expect = 2.7
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 12/81 (14%)
Query: 120 HFKDFTQVLALNYGSKNELSRAFKSLLES--PPSHINLL---------ESLENEISNRLD 168
HF+ + NE+S A+K+ LES PS I L S+E+
Sbjct: 487 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 546
Query: 169 THDLPEVDLLL-RTGGEMRLS 188
D+ D++L TG E+ LS
Sbjct: 547 LQDVANPDIILVATGSEVSLS 567
>pdb|1AY0|A Chain A, Identification Of Catalytically Important Residues In
Yeast Transketolase
pdb|1AY0|B Chain B, Identification Of Catalytically Important Residues In
Yeast Transketolase
Length = 680
Score = 26.6 bits (57), Expect = 2.7
Identities = 24/81 (29%), Positives = 35/81 (42%), Gaps = 12/81 (14%)
Query: 120 HFKDFTQVLALNYGSKNELSRAFKSLLES--PPSHINLL---------ESLENEISNRLD 168
HF+ + NE+S A+K+ LES PS I L S+E+
Sbjct: 489 HFRSLPNIQVWRPADGNEVSAAYKNSLESKHTPSIIALSRQNLPQLEGSSIESASKGGYV 548
Query: 169 THDLPEVDLLL-RTGGEMRLS 188
D+ D++L TG E+ LS
Sbjct: 549 LQDVANPDIILVATGSEVSLS 569
>pdb|1DN1|A Chain A, Crystal Structure Of The Neuronal-Sec1SYNTAXIN 1A COMPLEX
Length = 594
Score = 26.6 bits (57), Expect = 2.7
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 118 TRHFKDFTQVLALNYGSK---NELSRAFKSL------LESPPSHINLLESLENEISNRLD 168
TR KDF+ +N G K +LS+ K + L +H++L E +D
Sbjct: 304 TRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVD 363
Query: 169 THDLPEVDLLLRTGGE 184
E DL + T E
Sbjct: 364 KLCRVEQDLAMGTDAE 379
>pdb|1PBV| Sec7 Domain Of The Exchange Factor Arno
Length = 195
Score = 26.6 bits (57), Expect = 2.7
Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 3/69 (4%)
Query: 65 PKSEVDFLMKM-LKKYLKDE--RSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHF 121
PK + FL++ L + +E R Y + AIGD G +EL +L D F
Sbjct: 25 PKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 84
Query: 122 KDFTQVLAL 130
D V AL
Sbjct: 85 TDLNLVQAL 93
>pdb|3BTA|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype A
Length = 1295
Score = 26.2 bits (56), Expect = 3.5
Identities = 25/94 (26%), Positives = 38/94 (39%), Gaps = 1/94 (1%)
Query: 76 LKKYLKDERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSK 135
+ K+L +YL N++ + LE F L+D +L+ D R QV L
Sbjct: 783 INKFLNQCSVSYLMNSMIPYGVKRLEDFDASLKDALLKYIYDNRGTL-IGQVDRLKDKVN 841
Query: 136 NELSRAFKSLLESPPSHINLLESLENEISNRLDT 169
N LS L + LL + I N ++T
Sbjct: 842 NTLSTDIPFQLSKYVDNQRLLSTFTEYIKNIINT 875
>pdb|2ADM|A Chain A, Adenine-N6-Dna-Methyltransferase Taqi
pdb|2ADM|B Chain B, Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQI|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 192 LWQSSYAELFFTPILWPDF 210
LW + +E FTPILW ++
Sbjct: 217 LWDTQESESGFTPILWAEY 235
>pdb|1AQJ|B Chain B, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
pdb|1AQJ|A Chain A, Structure Of Adenine-N6-Dna-Methyltransferase Taqi
Length = 421
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 192 LWQSSYAELFFTPILWPDF 210
LW + +E FTPILW ++
Sbjct: 217 LWDTQESESGFTPILWAEY 235
>pdb|1G38|A Chain A, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
pdb|1G38|D Chain D, Adenine-Specific Methyltransferase M. Taq IDNA COMPLEX
Length = 393
Score = 26.2 bits (56), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 192 LWQSSYAELFFTPILWPDF 210
LW + +E FTPILW ++
Sbjct: 197 LWDTQESESGFTPILWAEY 215
>pdb|1BC9| Cytohesin-1B2-1 Sec7 Domain, Nmr, Minimized Average Structure
Length = 200
Score = 25.0 bits (53), Expect = 7.8
Identities = 20/69 (28%), Positives = 29/69 (41%), Gaps = 3/69 (4%)
Query: 65 PKSEVDFLMK--MLKKYLKD-ERSTYLNNNIRFRAIGDLEGFSKELRDTILQLENDTRHF 121
PK + FL++ +LK +D + Y + AIGD G E +L + F
Sbjct: 21 PKKGIQFLIENDLLKNTCEDIAQFLYKGEGLNKTAIGDYLGERDEFNIQVLHAFVELHEF 80
Query: 122 KDFTQVLAL 130
D V AL
Sbjct: 81 TDLNLVQAL 89
Database: /var/www/html/HP/blast_new/blast/db/pdbaa
Posted date: Dec 20, 2002 11:08 AM
Number of letters in database: 2,899,336
Number of sequences in database: 13,198
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,410,148
Number of Sequences: 13198
Number of extensions: 58100
Number of successful extensions: 207
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 14
length of query: 234
length of database: 2,899,336
effective HSP length: 85
effective length of query: 149
effective length of database: 1,777,506
effective search space: 264848394
effective search space used: 264848394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)