BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|15644753|ref|NP_206923.1| threonyl-tRNA synthetase (thrS) [Helicobacter pylori 26695] (612 letters) Database: /var/www/html/HP/blast_new/blast/db/pdbaa 13,198 sequences; 2,899,336 total letters Searching...........................done



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1QF6|A  Chain A, Structure Of E. Coli Threonyl-Trna Synt...   482  e-137
pdb|1KOG|A  Chain A, Crystal Structure Of E. Coli Threonyl-T...   330  4e-91
pdb|1SES|A  Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (S...    42  3e-04
pdb|1DDX|A  Chain A, Crystal Structure Of A Mixture Of Arach...    28  3.0
pdb|1CVU|A  Chain A, Crystal Structure Of Arachidonic Acid B...    28  3.0
pdb|1CX2|A  Chain A, Cyclooxygenase-2 (Prostaglandin Synthas...    28  3.0
pdb|1HTT|A  Chain A, Histidyl-Trna Synthetase >gi|1942450|pd...    27  5.1
pdb|1KMM|C  Chain C, Histidyl-Trna Synthetase Complexed With...    27  5.1

>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
           With Its Cognate Trna
          Length = 642

 Score =  482 bits (1241), Expect = e-137
 Identities = 241/570 (42%), Positives = 362/570 (63%), Gaps = 6/570 (1%)

Query: 47  LEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTSSKISEEDLPKIEAKMKEF 106
           LE+IRHSCAHLL  ++K L+P  K  +GPV++ GFYYD      +++ED+  +E +M E 
Sbjct: 68  LEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHEL 127

Query: 107 AKLKLAITKETLTREQALERF--KGDELKHAVMSK--IGGDAFGVYQQGEFEDLCKGPHL 162
           A+    + K+ ++  +A E F  +G+  K +++ +     D  G+Y   E+ D+C+GPH+
Sbjct: 128 AEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHV 187

Query: 163 PNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRDHRKL 222
           PN RF +HFKL K AGAY  GD NN+ML RIYG A+A K+ L  YL ++EEA KRDHRK+
Sbjct: 188 PNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRLEEAAKRDHRKI 247

Query: 223 GVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWKI 282
           G +L L+   +E   G+  W   G  + + +E  +   L    Y+ VKGP ++   +W+ 
Sbjct: 248 GKQLDLYHMQEE-APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEK 306

Query: 283 SGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEK 342
           +GH+DNYK+ M+ T+ + +EY IKPMNC GH++++   L SYRDLPLR  E+G  HR+E 
Sbjct: 307 TGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEP 366

Query: 343 SGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFS-YEMELSTRPAK 401
           SG LHGL+RVR FTQDDAHIFC+ EQI+ EV+  +   + +   F F    ++LSTRP K
Sbjct: 367 SGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEK 426

Query: 402 SIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQCGTIQVD 461
            IG D++W++A   L  AL+E+ I ++   G GAFYGPKI+  + D L R WQCGT+Q+D
Sbjct: 427 RIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLD 486

Query: 462 MNLPERFKLAFTNEYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIP 521
            +LP R   ++  E N  + PVMIHRAILGS ERFI IL+E F G FP ++AP Q+ ++ 
Sbjct: 487 FSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMN 546

Query: 522 INEEHHVFALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEIL 581
           I +    +  +L + L    I V+   +N+ +  K+R    +++P +LV G++EVE+  +
Sbjct: 547 ITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKV 606

Query: 582 SIRDREKQDQYKMPLKEFLNMVESKMQEVS 611
           ++R R  +D   M + E +  ++ +++  S
Sbjct: 607 AVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 636

>pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
           Interacting With The Essential Domain Of Its Mrna
           Operator
 pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With The Ligand Threonine
 pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
 pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase Complexed With A Seryl Adenylate Analog
 pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
           Synthetase With A Threonyl Adenylate Analog
          Length = 401

 Score =  330 bits (845), Expect = 4e-91
 Identities = 164/396 (41%), Positives = 249/396 (62%), Gaps = 2/396 (0%)

Query: 217 RDHRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILK 276
           RDHRK+G +L L+   +E   G+  W   G  + + +E  +   L    Y+ VKGP ++ 
Sbjct: 1   RDHRKIGKQLDLYHMQEE-APGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMD 59

Query: 277 SDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGV 336
             +W+ +GH+DNYK+ M+ T+ + +EY IKPMNC GH++++   L SYRDLPLR  E+G 
Sbjct: 60  RVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGS 119

Query: 337 VHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFDFS-YEMEL 395
            HR+E SG LHGL+RVR FTQDDAHIFC+ EQI+ EV+  +   + +   F F    ++L
Sbjct: 120 CHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKL 179

Query: 396 STRPAKSIGDDKVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALKRKWQC 455
           STRP K IG D++W++A   L  AL+E+ I ++   G GAFYGPKI+  + D L R WQC
Sbjct: 180 STRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQC 239

Query: 456 GTIQVDMNLPERFKLAFTNEYNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPT 515
           GT+Q+D +LP R   ++  E N  + PVMIHRAILGS ERFI IL+E F G FP ++AP 
Sbjct: 240 GTVQLDFSLPSRLSASYVGEDNERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPV 299

Query: 516 QIALIPINEEHHVFALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEE 575
           Q+ ++ I +    +  +L + L    I V+   +N+ +  K+R    +++P +LV G++E
Sbjct: 300 QVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKE 359

Query: 576 VETEILSIRDREKQDQYKMPLKEFLNMVESKMQEVS 611
           VE+  +++R R  +D   M + E +  ++ +++  S
Sbjct: 360 VESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSRS 395

>pdb|1SES|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
           Complexed With Seryl-Hydroxamate-Amp
 pdb|1SES|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
           Complexed With Seryl-Hydroxamate-Amp
 pdb|1SET|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
           Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
 pdb|1SET|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) (Serine-Trna Ligase)
           Complexed With 5'-O-[n-(L-Seryl)-Sulphamoyl]adenosine
 pdb|1SRY|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11)
 pdb|1SRY|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11)
 pdb|1SER|B Chain B, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
           Trna-Ser 2 (Gga Anticodon)
 pdb|1SER|A Chain A, Seryl-Trna Synthetase (E.C.6.1.1.11) Complexed With
           Trna-Ser 2 (Gga Anticodon)
          Length = 421

 Score = 41.6 bits (96), Expect = 3e-04
 Identities = 33/140 (23%), Positives = 62/140 (43%), Gaps = 17/140 (12%)

Query: 264 RGYEPVKGPEILKSDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHS 323
           RG+ P+  P   +   +  +GH+  Y++ ++   I E +     +   G  +V  +ALHS
Sbjct: 183 RGFLPMTLPSYAREKAFLGTGHFPAYRDQVW--AIAETD-----LYLTGTAEVVLNALHS 235

Query: 324 -----YRDLPLRFYEYGVVHRHEKSGV---LHGLLRVREFTQDDAHIF--CSFEQIQSEV 373
                Y  LPLR+  Y    R E       + GL+RV +F + + ++    S E      
Sbjct: 236 GEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF 295

Query: 374 SAILDFTHKIMQAFDFSYEM 393
             +L+   +I++  +  Y +
Sbjct: 296 QELLENAEEILRLLELPYRL 315

>pdb|1DDX|A Chain A, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|B Chain B, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|C Chain C, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
 pdb|1DDX|D Chain D, Crystal Structure Of A Mixture Of Arachidonic Acid And
           Prostaglandin Bound To The Cyclooxygenase Active Site Of
           Cox-2: Prostaglandin Structure
          Length = 552

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)

Query: 116 ETLTREQALERFKGDELKHAVMSKIGGDAFGVYQQGEFEDLCKGPHLP 163
           ETL R+  L  FK  +LK+ V   IGG+ +    +    ++   PH+P
Sbjct: 205 ETLDRQHKLRLFKDGKLKYQV---IGGEVYPPTVKDTQVEMIYPPHIP 249

>pdb|1CVU|A Chain A, Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Active Site Of Cox-2
 pdb|1CVU|B Chain B, Crystal Structure Of Arachidonic Acid Bound To The
           Cyclooxygenase Active Site Of Cox-2
          Length = 552

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)

Query: 116 ETLTREQALERFKGDELKHAVMSKIGGDAFGVYQQGEFEDLCKGPHLP 163
           ETL R+  L  FK  +LK+ V   IGG+ +    +    ++   PH+P
Sbjct: 205 ETLDRQHKLRLFKDGKLKYQV---IGGEVYPPTVKDTQVEMIYPPHIP 249

>pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558
 pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Flurbiprofen
 pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Flurbiprofen
 pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Flurbiprofen
 pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Flurbiprofen
 pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Indomethacin
 pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Indomethacin
 pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Indomethacin
 pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Non-Selective Inhibitor, Indomethacin
 pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
           Synthase-2)
 pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558 In I222 Space Group
 pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
           A Selective Inhibitor, Sc-558 In I222 Space Group
          Length = 587

 Score = 28.1 bits (61), Expect = 3.0
 Identities = 16/48 (33%), Positives = 25/48 (51%), Gaps = 3/48 (6%)

Query: 116 ETLTREQALERFKGDELKHAVMSKIGGDAFGVYQQGEFEDLCKGPHLP 163
           ETL R+  L  FK  +LK+ V   IGG+ +    +    ++   PH+P
Sbjct: 205 ETLDRQHKLRLFKDGKLKYQV---IGGEVYPPTVKDTQVEMIYPPHIP 249

>pdb|1HTT|A Chain A, Histidyl-Trna Synthetase
 pdb|1HTT|C Chain C, Histidyl-Trna Synthetase
 pdb|1HTT|B Chain B, Histidyl-Trna Synthetase
 pdb|1HTT|D Chain D, Histidyl-Trna Synthetase
          Length = 423

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 47/200 (23%), Positives = 84/200 (41%), Gaps = 21/200 (10%)

Query: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWK--ISGHYDNYKENMY- 294
           G+  +LP    + +RIE  L   L   GY  ++ P + ++ ++K  I    D  ++ MY 
Sbjct: 9   GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 68

Query: 295 FTTIDEQEYGIKPMNCVGHIK--VYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRV 352
           F   +     ++P    G ++  +    L++      R +  G + RHE+        R 
Sbjct: 69  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQ---RLWYIGPMFRHERP----QKGRY 121

Query: 353 REFTQDDAHIF-CSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEK 411
           R+F Q    +F      I +E   ++  T +  +A   S   E  T    SIG  +    
Sbjct: 122 RQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS---EHVTLELNSIGSLEARAN 175

Query: 412 ATNALKEALKEHRIDYKIDE 431
             +AL   L++H+   K+DE
Sbjct: 176 YRDALVAFLEQHK--EKLDE 193

>pdb|1KMM|C Chain C, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 pdb|1KMM|A Chain A, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 pdb|1KMN|C Chain C, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 pdb|1KMN|A Chain A, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 pdb|1KMM|B Chain B, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 pdb|1KMM|D Chain D, Histidyl-Trna Synthetase Complexed With Histidyl-Adenylate
 pdb|1KMN|B Chain B, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
 pdb|1KMN|D Chain D, Histidyl-Trna Synthetase Complexed With Histidinol And Atp
          Length = 424

 Score = 27.3 bits (59), Expect = 5.1
 Identities = 47/200 (23%), Positives = 84/200 (41%), Gaps = 21/200 (10%)

Query: 238 GLPLWLPKGARLRKRIEDLLSQALLLRGYEPVKGPEILKSDVWK--ISGHYDNYKENMY- 294
           G+  +LP    + +RIE  L   L   GY  ++ P + ++ ++K  I    D  ++ MY 
Sbjct: 10  GMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYT 69

Query: 295 FTTIDEQEYGIKPMNCVGHIK--VYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRV 352
           F   +     ++P    G ++  +    L++      R +  G + RHE+        R 
Sbjct: 70  FEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQEQ---RLWYIGPMFRHERP----QKGRY 122

Query: 353 REFTQDDAHIF-CSFEQIQSEVSAILDFTHKIMQAFDFSYEMELSTRPAKSIGDDKVWEK 411
           R+F Q    +F      I +E   ++  T +  +A   S   E  T    SIG  +    
Sbjct: 123 RQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS---EHVTLELNSIGSLEARAN 176

Query: 412 ATNALKEALKEHRIDYKIDE 431
             +AL   L++H+   K+DE
Sbjct: 177 YRDALVAFLEQHK--EKLDE 194

  Database: /var/www/html/HP/blast_new/blast/db/pdbaa
    Posted date:  Dec 20, 2002 11:08 AM
  Number of letters in database: 2,899,336
  Number of sequences in database:  13,198
  
Lambda     K      H
   0.320    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,546,500
Number of Sequences: 13198
Number of extensions: 152003
Number of successful extensions: 330
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 11
length of query: 612
length of database: 2,899,336
effective HSP length: 94
effective length of query: 518
effective length of database: 1,658,724
effective search space: 859219032
effective search space used: 859219032
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)